HEADER VIRAL PROTEIN 05-MAR-13 2M5S TITLE HIGH-RESOLUTION NMR STRUCTURE AND CRYO-EM IMAGING SUPPORT MULTIPLE TITLE 2 FUNCTIONAL ROLES FOR THE ACCESSORY I-DOMAIN OF PHAGE P22 COAT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIS DOMAIN HAS PREVIOUSLY BEEN CALLED THE 'EXTRA-DENSITY COMPND 5 DOMAIN' AND 'TELOKIN-LIKE DOMAIN' IN THE LITERATURE BASED ON CRYO-EM COMPND 6 MODELS; COMPND 7 SYNONYM: PROTEIN GP5; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P22; SOURCE 3 ORGANISM_TAXID: 10754; SOURCE 4 GENE: 5, GP5 COAT PROTEIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30B KEYWDS TELOKIN-LIKE DOMAIN, EXTRA-DENSITY DOMAIN, D-LOOP, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR A.A.RIZZO,M.M.SUHANOVSKY,M.L.BAKER,L.C.R.FRASER,L.M.JONES,D.L.REMPEL, AUTHOR 2 M.L.GROSS,W.CHIU,A.T.ALEXANDRESCU,C.M.TESCHKE REVDAT 4 01-MAY-24 2M5S 1 SEQADV REVDAT 3 02-JUL-14 2M5S 1 JRNL REVDAT 2 18-JUN-14 2M5S 1 JRNL REVDAT 1 05-MAR-14 2M5S 0 JRNL AUTH A.A.RIZZO,M.M.SUHANOVSKY,M.L.BAKER,L.C.FRASER,L.M.JONES, JRNL AUTH 2 D.L.REMPEL,M.L.GROSS,W.CHIU,A.T.ALEXANDRESCU,C.M.TESCHKE JRNL TITL MULTIPLE FUNCTIONAL ROLES OF THE ACCESSORY I-DOMAIN OF JRNL TITL 2 BACTERIOPHAGE P22 COAT PROTEIN REVEALED BY NMR STRUCTURE AND JRNL TITL 3 CRYOEM MODELING. JRNL REF STRUCTURE V. 22 830 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24836025 JRNL DOI 10.1016/J.STR.2014.04.003 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3.1, ARIA/CNS/CCPNMR_ANALYSIS REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AUTOMATED ASSIGNMENT OF NOE SPECTRA WAS REMARK 3 CARRIED OUT USING ARIA USING FLOATING CHIRALITY. CCPNMR ANALYSIS REMARK 3 WAS USED TO INSPECT VIOLATIONS AND REFINE THE STRUCTURE FOR REMARK 3 FURTHER CALCULATIONS WITH ARIA. REMARK 4 REMARK 4 2M5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000103244. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.15 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O; 1.5 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 20 MM REMARK 210 SODIUM PHOSPHATE, 1% H2O/99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D CCH-TOCSY; 3D HCCH-TOCSY; 3D REMARK 210 HNHB; 3D LONG-RANGE HNCO; 3D REMARK 210 HNHA; 3D 1H-15N TOCSY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 226 -62.61 -108.39 REMARK 500 1 LYS A 286 -52.06 -131.05 REMARK 500 1 LEU A 289 55.51 -97.25 REMARK 500 1 THR A 304 19.49 -147.92 REMARK 500 1 HIS A 305 113.15 -169.98 REMARK 500 1 ALA A 337 30.33 -176.94 REMARK 500 2 SER A 231 73.51 -105.33 REMARK 500 2 LEU A 243 -174.72 68.14 REMARK 500 2 ASP A 244 -157.93 -96.47 REMARK 500 2 ARG A 255 -64.29 -90.71 REMARK 500 2 MET A 284 31.62 -98.42 REMARK 500 2 LEU A 289 46.10 -84.39 REMARK 500 2 HIS A 305 119.64 -164.14 REMARK 500 2 ALA A 337 29.06 -178.23 REMARK 500 3 ALA A 225 70.61 47.23 REMARK 500 3 THR A 226 -79.00 -106.36 REMARK 500 3 SER A 231 60.04 -107.11 REMARK 500 3 ASP A 246 -44.13 -175.34 REMARK 500 3 LYS A 286 -41.60 -148.94 REMARK 500 3 THR A 304 19.49 -150.27 REMARK 500 3 HIS A 305 115.84 -169.03 REMARK 500 3 ASN A 329 -33.36 -135.13 REMARK 500 4 ALA A 225 75.46 57.36 REMARK 500 4 THR A 226 40.32 -73.16 REMARK 500 4 SER A 231 76.77 -105.52 REMARK 500 4 TRP A 241 -174.03 67.09 REMARK 500 4 GLN A 242 122.85 68.47 REMARK 500 4 ASN A 251 81.33 63.49 REMARK 500 4 LYS A 286 54.19 -166.21 REMARK 500 4 LEU A 289 42.72 -87.43 REMARK 500 4 THR A 304 20.57 -151.90 REMARK 500 4 HIS A 305 114.94 -171.43 REMARK 500 5 SER A 231 72.52 -102.20 REMARK 500 5 ASN A 248 73.18 -100.61 REMARK 500 5 ASN A 251 126.56 69.96 REMARK 500 5 MET A 284 -45.84 75.93 REMARK 500 5 ALA A 293 86.09 -64.21 REMARK 500 5 THR A 304 16.09 -143.00 REMARK 500 5 HIS A 305 116.28 -171.54 REMARK 500 5 ALA A 337 40.99 -142.85 REMARK 500 6 ASP A 244 -92.52 -107.93 REMARK 500 6 ALA A 293 104.08 -52.91 REMARK 500 6 ALA A 337 32.23 -153.09 REMARK 500 7 THR A 226 -77.24 -66.81 REMARK 500 7 SER A 231 47.70 -101.93 REMARK 500 7 TRP A 241 -53.21 71.74 REMARK 500 7 ASP A 246 -59.87 -124.47 REMARK 500 7 ASN A 251 -154.70 62.54 REMARK 500 7 LYS A 286 24.02 -151.85 REMARK 500 7 ARG A 299 139.33 -176.85 REMARK 500 REMARK 500 THIS ENTRY HAS 252 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IYI RELATED DB: PDB REMARK 900 CRYO-EM MODEL OF P22'S COAT PROTEIN IN THE PROCAPSID REMARK 900 RELATED ID: 3IYH RELATED DB: PDB REMARK 900 CRYO-EM MODEL OF P22'S COAT PROTEIN IN THE EXPANDED HEAD REMARK 900 RELATED ID: 2XYY RELATED DB: PDB REMARK 900 CRYO-EM MODEL OF P22'S COAT PROTEIN IN THE PROCAPSID REMARK 900 RELATED ID: 2XYZ RELATED DB: PDB REMARK 900 CRYO-EM MODEL OF P22'S COAT PROTEIN IN THE VIRION REMARK 900 RELATED ID: 18566 RELATED DB: BMRB DBREF 2M5S A 223 345 UNP P26747 VG05_BPP22 223 345 SEQADV 2M5S HIS A 216 UNP P26747 EXPRESSION TAG SEQADV 2M5S HIS A 217 UNP P26747 EXPRESSION TAG SEQADV 2M5S HIS A 218 UNP P26747 EXPRESSION TAG SEQADV 2M5S HIS A 219 UNP P26747 EXPRESSION TAG SEQADV 2M5S HIS A 220 UNP P26747 EXPRESSION TAG SEQADV 2M5S HIS A 221 UNP P26747 EXPRESSION TAG SEQADV 2M5S GLY A 222 UNP P26747 EXPRESSION TAG SEQRES 1 A 130 HIS HIS HIS HIS HIS HIS GLY SER THR ALA THR GLY ILE SEQRES 2 A 130 THR VAL SER GLY ALA GLN SER PHE LYS PRO VAL ALA TRP SEQRES 3 A 130 GLN LEU ASP ASN ASP GLY ASN LYS VAL ASN VAL ASP ASN SEQRES 4 A 130 ARG PHE ALA THR VAL THR LEU SER ALA THR THR GLY MET SEQRES 5 A 130 LYS ARG GLY ASP LYS ILE SER PHE ALA GLY VAL LYS PHE SEQRES 6 A 130 LEU GLY GLN MET ALA LYS ASN VAL LEU ALA GLN ASP ALA SEQRES 7 A 130 THR PHE SER VAL VAL ARG VAL VAL ASP GLY THR HIS VAL SEQRES 8 A 130 GLU ILE THR PRO LYS PRO VAL ALA LEU ASP ASP VAL SER SEQRES 9 A 130 LEU SER PRO GLU GLN ARG ALA TYR ALA ASN VAL ASN THR SEQRES 10 A 130 SER LEU ALA ASP ALA MET ALA VAL ASN ILE LEU ASN VAL HELIX 1 HA PRO A 322 TYR A 327 1 6 SHEET 1 BS1 7 ARG A 255 ALA A 263 0 SHEET 2 BS1 7 THR A 304 THR A 309 -1 N VAL A 306 O VAL A 259 SHEET 3 BS1 7 ASP A 292 ASP A 302 -1 SHEET 4 BS1 7 ARG A 269 ALA A 276 -1 N ILE A 273 O PHE A 295 SHEET 5 BS1 7 ALA A 335 ILE A 342 -1 N ASN A 341 O SER A 274 SHEET 6 BS1 7 ILE A 228 ALA A 233 -1 N ILE A 228 O VAL A 340 SHEET 7 BS1 7 ARG A 255 ALA A 263 -1 N SER A 262 O THR A 229 SHEET 1 BS2 3 VAL A 313 ASP A 316 0 SHEET 2 BS2 3 ASN A 329 THR A 332 1 N VAL A 330 O VAL A 313 SHEET 3 BS2 3 VAL A 278 PHE A 280 -1 O LYS A 279 H ASN A 331 CISPEP 1 THR A 309 PRO A 310 1 -1.60 CISPEP 2 THR A 309 PRO A 310 2 -0.59 CISPEP 3 THR A 309 PRO A 310 3 1.02 CISPEP 4 THR A 309 PRO A 310 4 -0.51 CISPEP 5 THR A 309 PRO A 310 5 -2.51 CISPEP 6 THR A 309 PRO A 310 6 -2.01 CISPEP 7 THR A 309 PRO A 310 7 -0.46 CISPEP 8 THR A 309 PRO A 310 8 2.36 CISPEP 9 THR A 309 PRO A 310 9 -1.38 CISPEP 10 THR A 309 PRO A 310 10 -4.90 CISPEP 11 THR A 309 PRO A 310 11 -4.01 CISPEP 12 THR A 309 PRO A 310 12 0.01 CISPEP 13 THR A 309 PRO A 310 13 1.24 CISPEP 14 THR A 309 PRO A 310 14 -2.90 CISPEP 15 THR A 309 PRO A 310 15 0.06 CISPEP 16 THR A 309 PRO A 310 16 -4.63 CISPEP 17 THR A 309 PRO A 310 17 -2.03 CISPEP 18 THR A 309 PRO A 310 18 -0.29 CISPEP 19 THR A 309 PRO A 310 19 -1.83 CISPEP 20 THR A 309 PRO A 310 20 -2.73 CISPEP 21 THR A 309 PRO A 310 21 -3.11 CISPEP 22 THR A 309 PRO A 310 22 -2.40 CISPEP 23 THR A 309 PRO A 310 23 -1.40 CISPEP 24 THR A 309 PRO A 310 24 -1.56 CISPEP 25 THR A 309 PRO A 310 25 -1.98 CISPEP 26 THR A 309 PRO A 310 26 -1.86 CISPEP 27 THR A 309 PRO A 310 27 -3.08 CISPEP 28 THR A 309 PRO A 310 28 -3.26 CISPEP 29 THR A 309 PRO A 310 29 -1.60 CISPEP 30 THR A 309 PRO A 310 30 -3.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1