HEADER VIRAL PROTEIN 07-MAR-13 2M5T TITLE SOLUTION STRUCTURE OF THE 2A PROTEINASE FROM A COMMON COLD AGENT, TITLE 2 HUMAN RHINOVIRUS RV-C02, STRAIN W12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN RHINOVIRUS 2A PROTEINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHINOVIRUS C; SOURCE 3 ORGANISM_TAXID: 463676; SOURCE 4 GENE: RV-C02; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PE-SUMO KAN KEYWDS HUMAN RHINOVIRUS C, 2A PROTEINASE, CYSTEINE PROTEINASE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR W.LEE,R.FREDERICK,M.TONELLI,A.T.TROUPIS,N.REININ,F.P.SUCHY,K.MOYER, AUTHOR 2 K.WATTERS,D.ACETI,A.C.PALMENBERG,J.L.MARKLEY REVDAT 4 14-JUN-23 2M5T 1 REMARK SEQADV LINK REVDAT 3 09-JUL-14 2M5T 1 JRNL REVDAT 2 02-JUL-14 2M5T 1 JRNL REVDAT 1 19-MAR-14 2M5T 0 JRNL AUTH W.LEE,K.E.WATTERS,A.T.TROUPIS,N.M.REINEN,F.P.SUCHY, JRNL AUTH 2 K.L.MOYER,R.O.FREDERICK,M.TONELLI,D.J.ACETI,A.C.PALMENBERG, JRNL AUTH 3 J.L.MARKLEY JRNL TITL SOLUTION STRUCTURE OF THE 2A PROTEASE FROM A COMMON COLD JRNL TITL 2 AGENT, HUMAN RHINOVIRUS C2, STRAIN W12. JRNL REF PLOS ONE V. 9 97198 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24937088 JRNL DOI 10.1371/JOURNAL.PONE.0097198 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, CYANA REMARK 3 AUTHORS : GODDARD (SPARKY), GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000103245. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM PROTEIN, 10 MM MES, 20 MM REMARK 210 SODIUM CHLORIDE, 10 MM DTT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF NOE REMARK 210 CONSTRAINTS, DIHEDRAL ANGLE CONSTRAINTS AND HYDROGEN BOND REMARK 210 CONSTRAINTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 10 -76.63 66.03 REMARK 500 1 GLN A 11 10.62 -146.19 REMARK 500 1 THR A 20 -60.04 -138.45 REMARK 500 1 THR A 21 56.54 34.85 REMARK 500 1 PRO A 22 -165.63 -69.74 REMARK 500 1 ASN A 23 -168.26 -61.06 REMARK 500 1 ASP A 24 35.80 -94.44 REMARK 500 1 GLN A 42 75.32 -112.61 REMARK 500 1 ASP A 46 100.73 -55.88 REMARK 500 1 PRO A 49 -169.42 -69.79 REMARK 500 1 CYS A 53 -178.76 -56.44 REMARK 500 1 ARG A 65 161.02 179.90 REMARK 500 1 TRP A 76 139.23 -176.65 REMARK 500 1 TYR A 84 -72.34 -77.63 REMARK 500 1 PRO A 86 -177.67 -69.81 REMARK 500 1 HIS A 88 -169.43 -172.98 REMARK 500 1 ASN A 92 74.60 55.75 REMARK 500 1 PRO A 102 77.18 -69.81 REMARK 500 1 CYS A 111 -168.19 -119.12 REMARK 500 1 PRO A 134 63.27 -69.70 REMARK 500 1 TYR A 135 -45.64 -179.23 REMARK 500 1 ASN A 136 -170.65 -60.84 REMARK 500 1 ALA A 139 -53.67 -174.83 REMARK 500 1 THR A 140 -175.30 62.52 REMARK 500 1 SER A 141 177.80 62.03 REMARK 500 2 ASP A 4 41.07 -107.80 REMARK 500 2 PHE A 6 -74.42 -119.80 REMARK 500 2 GLU A 10 -76.41 66.30 REMARK 500 2 GLN A 11 10.21 -145.86 REMARK 500 2 THR A 20 -60.48 -132.44 REMARK 500 2 THR A 21 56.46 35.12 REMARK 500 2 PRO A 22 -164.31 -69.74 REMARK 500 2 ASN A 23 -167.45 -60.34 REMARK 500 2 ASP A 24 41.07 -91.10 REMARK 500 2 THR A 26 -176.01 -58.46 REMARK 500 2 ILE A 27 -67.65 -131.89 REMARK 500 2 ASP A 41 33.62 -98.18 REMARK 500 2 GLN A 42 74.54 -112.79 REMARK 500 2 PRO A 49 -167.38 -69.75 REMARK 500 2 CYS A 51 -61.95 -162.54 REMARK 500 2 ASP A 52 77.14 66.77 REMARK 500 2 CYS A 53 -174.10 -67.60 REMARK 500 2 TRP A 76 137.37 -174.77 REMARK 500 2 GLU A 81 106.32 -49.63 REMARK 500 2 THR A 82 -177.81 -176.29 REMARK 500 2 GLN A 83 -77.43 67.76 REMARK 500 2 TYR A 84 23.83 -163.75 REMARK 500 2 PRO A 86 -169.14 -69.80 REMARK 500 2 HIS A 88 -168.39 -172.38 REMARK 500 2 GLU A 97 108.82 -53.60 REMARK 500 REMARK 500 THIS ENTRY HAS 389 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 CYS A 53 SG 90.3 REMARK 620 3 CYS A 111 SG 153.0 92.5 REMARK 620 4 HIS A 113 NE2 80.5 126.2 118.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19079 RELATED DB: BMRB DBREF 2M5T A 1 142 UNP I2CMJ2 I2CMJ2_9ENTO 838 979 SEQADV 2M5T ALA A 105 UNP I2CMJ2 CYS 942 ENGINEERED MUTATION SEQRES 1 A 142 GLY PRO SER ASP LEU PHE VAL HIS THR GLU GLN ALA ILE SEQRES 2 A 142 TYR LYS ASN ALA HIS LEU THR THR PRO ASN ASP GLN THR SEQRES 3 A 142 ILE LEU LEU ALA LEU THR ALA ASP LEU GLN ILE ASP GLY SEQRES 4 A 142 CYS ASP GLN PRO GLY PRO ASP ASN ILE PRO ASP CYS ASP SEQRES 5 A 142 CYS THR SER GLY CYS TYR TYR SER ARG SER LEU ASP ARG SEQRES 6 A 142 TYR ILE PRO VAL GLU CYS GLU ALA HIS ASP TRP TYR PRO SEQRES 7 A 142 VAL GLU GLU THR GLN TYR TYR PRO LYS HIS ILE GLN TYR SEQRES 8 A 142 ASN LEU LEU ILE GLY GLU GLY PRO CYS VAL PRO GLY ASP SEQRES 9 A 142 ALA GLY GLY LYS LEU LEU CYS ARG HIS GLY VAL ILE GLY SEQRES 10 A 142 ILE ILE THR ALA GLY GLY ASP GLY HIS VAL ALA PHE THR SEQRES 11 A 142 ASP LEU ARG PRO TYR ASN ILE LYS ALA THR SER GLN HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 HIS A 18 THR A 20 5 3 SHEET 1 A 4 VAL A 7 THR A 9 0 SHEET 2 A 4 ALA A 12 ASN A 16 -1 O ALA A 12 N THR A 9 SHEET 3 A 4 LEU A 35 GLY A 39 -1 O GLN A 36 N LYS A 15 SHEET 4 A 4 LEU A 28 ALA A 30 -1 N ALA A 30 O LEU A 35 SHEET 1 B 7 SER A 55 SER A 60 0 SHEET 2 B 7 ARG A 65 HIS A 74 -1 O ILE A 67 N TYR A 58 SHEET 3 B 7 LEU A 93 GLY A 96 -1 O ILE A 95 N GLU A 72 SHEET 4 B 7 VAL A 127 ASP A 131 -1 O PHE A 129 N LEU A 94 SHEET 5 B 7 VAL A 115 GLY A 122 -1 N ILE A 118 O THR A 130 SHEET 6 B 7 LYS A 108 LEU A 110 -1 N LEU A 109 O GLY A 117 SHEET 7 B 7 SER A 55 SER A 60 -1 N CYS A 57 O LEU A 110 SHEET 1 C 2 PRO A 78 VAL A 79 0 SHEET 2 C 2 HIS A 88 ILE A 89 -1 O HIS A 88 N VAL A 79 LINK SG CYS A 51 ZN ZN A 201 1555 1555 2.62 LINK SG CYS A 53 ZN ZN A 201 1555 1555 2.40 LINK SG CYS A 111 ZN ZN A 201 1555 1555 2.69 LINK NE2 HIS A 113 ZN ZN A 201 1555 1555 2.38 SITE 1 AC1 6 CYS A 51 CYS A 53 CYS A 111 ARG A 112 SITE 2 AC1 6 HIS A 113 GLY A 114 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1