HEADER CELL CYCLE 06-APR-13 2M6N TITLE 3D SOLUTION STRUCTURE OF EMI1 (EARLY MITOTIC INHIBITOR 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-BOX ONLY PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC BINDING DOMAIN (UNP RESIDUES 364-447); COMPND 5 SYNONYM: EMI1, EARLY MITOTIC INHIBITOR 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FBXO5, EMI1, FBX5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS EMI1, APC, E3 LIGASE, ZBR, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.J.FRYE,N.G.BROWN,G.PETZOLD,E.R.WATSON,G.R.ROYAPPA,A.NOURSE, AUTHOR 2 M.JARVIS,R.W.KRIWACKI,J.PETERS,H.STARK,B.A.SCHULMAN REVDAT 3 17-JUL-13 2M6N 1 JRNL REVDAT 2 12-JUN-13 2M6N 1 JRNL REVDAT 1 29-MAY-13 2M6N 0 JRNL AUTH J.J.FRYE,N.G.BROWN,G.PETZOLD,E.R.WATSON,C.R.GRACE,A.NOURSE, JRNL AUTH 2 M.A.JARVIS,R.W.KRIWACKI,J.M.PETERS,H.STARK,B.A.SCHULMAN JRNL TITL ELECTRON MICROSCOPY STRUCTURE OF HUMAN APC/C(CDH1)-EMI1 JRNL TITL 2 REVEALS MULTIMODAL MECHANISM OF E3 LIGASE SHUTDOWN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 827 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 23708605 JRNL DOI 10.1038/NSMB.2593 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB103275. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 F-BOX ONLY PROTEIN 5, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D HCCH REMARK 210 -TOCSY; 3D H(CCO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 ASN A 11 REMARK 465 GLU A 12 REMARK 465 SER A 59 REMARK 465 ASP A 60 REMARK 465 GLY A 61 REMARK 465 LYS A 62 REMARK 465 LEU A 63 REMARK 465 LEU A 64 REMARK 465 LYS A 65 REMARK 465 ALA A 66 REMARK 465 SER A 67 REMARK 465 CYS A 68 REMARK 465 LYS A 69 REMARK 465 ILE A 70 REMARK 465 GLY A 71 REMARK 465 PRO A 72 REMARK 465 LEU A 73 REMARK 465 PRO A 74 REMARK 465 GLY A 75 REMARK 465 THR A 76 REMARK 465 LYS A 77 REMARK 465 LYS A 78 REMARK 465 SER A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 ASN A 82 REMARK 465 LEU A 83 REMARK 465 ARG A 84 REMARK 465 ARG A 85 REMARK 465 LEU A 86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 19 -72.38 -99.01 REMARK 500 1 PRO A 23 91.11 -69.72 REMARK 500 1 LYS A 25 102.41 -58.73 REMARK 500 1 LYS A 36 34.48 -95.36 REMARK 500 1 CYS A 40 -79.88 -123.29 REMARK 500 1 LYS A 56 -74.87 -79.32 REMARK 500 2 ARG A 19 -69.65 -98.18 REMARK 500 2 LYS A 25 105.86 -54.21 REMARK 500 2 LYS A 36 31.24 -97.36 REMARK 500 2 CYS A 40 -78.91 -113.03 REMARK 500 2 THR A 54 28.16 -166.74 REMARK 500 2 THR A 55 28.09 -141.63 REMARK 500 2 ASP A 57 118.55 -179.39 REMARK 500 3 LYS A 25 109.53 -56.46 REMARK 500 3 LYS A 36 31.96 -95.17 REMARK 500 3 CYS A 40 -79.05 -108.89 REMARK 500 3 HIS A 53 95.47 -62.07 REMARK 500 3 THR A 54 -70.70 -127.56 REMARK 500 3 THR A 55 -70.78 -58.06 REMARK 500 3 LYS A 56 -64.46 -133.29 REMARK 500 4 ARG A 19 -66.48 -94.31 REMARK 500 4 ASN A 21 76.61 52.06 REMARK 500 4 LYS A 25 98.28 -58.50 REMARK 500 4 CYS A 40 -77.77 -104.39 REMARK 500 4 THR A 54 -74.00 -127.05 REMARK 500 5 LYS A 25 100.79 -59.72 REMARK 500 5 CYS A 40 -77.51 -103.50 REMARK 500 5 HIS A 53 -75.34 -51.69 REMARK 500 5 THR A 55 -178.51 -174.87 REMARK 500 6 CYS A 20 23.74 -140.23 REMARK 500 6 CYS A 40 -78.86 -110.79 REMARK 500 6 THR A 55 -169.97 -125.01 REMARK 500 7 ASN A 21 73.69 52.47 REMARK 500 7 LYS A 25 109.22 -57.27 REMARK 500 7 CYS A 40 -79.23 -107.26 REMARK 500 8 ARG A 19 -68.83 -99.28 REMARK 500 8 LYS A 25 104.03 -55.19 REMARK 500 8 LYS A 36 43.27 -92.16 REMARK 500 8 CYS A 40 -78.86 -91.50 REMARK 500 8 TYR A 52 170.08 -51.73 REMARK 500 8 LYS A 56 -176.45 -179.45 REMARK 500 9 ARG A 19 -72.21 -97.90 REMARK 500 9 PRO A 23 89.39 -69.74 REMARK 500 9 LYS A 25 99.01 -61.57 REMARK 500 9 CYS A 40 -78.63 -98.55 REMARK 500 9 LYS A 47 -71.74 -73.41 REMARK 500 9 THR A 54 -74.16 -101.78 REMARK 500 9 THR A 55 -41.25 -130.16 REMARK 500 10 ARG A 19 -69.57 -96.62 REMARK 500 10 PRO A 23 98.62 -69.84 REMARK 500 REMARK 500 THIS ENTRY HAS 103 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CT7 RELATED DB: PDB REMARK 900 RELATED ID: 2JMO RELATED DB: PDB REMARK 900 RELATED ID: 19147 RELATED DB: BMRB DBREF 2M6N A 3 86 UNP Q9UKT4 FBX5_HUMAN 364 447 SEQADV 2M6N GLY A 1 UNP Q9UKT4 EXPRESSION TAG SEQADV 2M6N SER A 2 UNP Q9UKT4 EXPRESSION TAG SEQRES 1 A 86 GLY SER GLU VAL ALA LYS THR LEU LYS LYS ASN GLU SER SEQRES 2 A 86 LEU LYS ALA CYS ILE ARG CYS ASN SER PRO ALA LYS TYR SEQRES 3 A 86 ASP CYS TYR LEU GLN ARG ALA THR CYS LYS ARG GLU GLY SEQRES 4 A 86 CYS GLY PHE ASP TYR CYS THR LYS CYS LEU CYS ASN TYR SEQRES 5 A 86 HIS THR THR LYS ASP CYS SER ASP GLY LYS LEU LEU LYS SEQRES 6 A 86 ALA SER CYS LYS ILE GLY PRO LEU PRO GLY THR LYS LYS SEQRES 7 A 86 SER LYS LYS ASN LEU ARG ARG LEU HET ZN A 101 1 HET ZN A 102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) SHEET 1 A 4 LYS A 15 ALA A 16 0 SHEET 2 A 4 PRO A 23 ASP A 27 -1 O ALA A 24 N LYS A 15 SHEET 3 A 4 ARG A 32 CYS A 35 -1 O ARG A 32 N ASP A 27 SHEET 4 A 4 ASP A 43 CYS A 45 -1 O TYR A 44 N ALA A 33 SITE 1 AC1 4 CYS A 17 CYS A 20 CYS A 35 CYS A 40 SITE 1 AC2 4 CYS A 45 CYS A 48 HIS A 53 CYS A 58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1