data_2M6W # _entry.id 2M6W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M6W pdb_00002m6w 10.2210/pdb2m6w/pdb RCSB RCSB103284 ? ? BMRB 19159 ? ? WWPDB D_1000103284 ? ? # _pdbx_database_related.db_id 19159 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M6W _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-04-19 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Karsisiotis, A.I.' 1 'Webba da Silva, M.' 2 # _citation.id primary _citation.title 'Encoding canonical DNA quadruplex structure.' _citation.journal_abbrev 'Sci Adv' _citation.journal_volume 4 _citation.page_first eaat3007 _citation.page_last eaat3007 _citation.year 2018 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 2375-2548 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 30182059 _citation.pdbx_database_id_DOI 10.1126/sciadv.aat3007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dvorkin, S.A.' 1 0000-0003-2924-751X primary 'Karsisiotis, A.I.' 2 ? primary 'Webba da Silva, M.' 3 0000-0001-6146-2522 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*AP*AP*GP*GP*GP*G)-3') ; _entity.formula_weight 7673.907 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DT)(DG)(DG)(DG)(DG)(DA)(DA) (DG)(DG)(DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can GGGGTTGGGGTTTTGGGGAAGGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DT n 1 14 DT n 1 15 DG n 1 16 DG n 1 17 DG n 1 18 DG n 1 19 DA n 1 20 DA n 1 21 DG n 1 22 DG n 1 23 DG n 1 24 DG n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2M6W _struct_ref.pdbx_db_accession 2M6W _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2M6W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 24 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2M6W _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 24 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 2 2 2 '2D 1H-1H NOESY' 2 3 2 '2D 1H-1H TOCSY' 2 4 2 '2D DQF-COSY' 1 5 1 '2D [1H-13C] H1(C5)H8 JR HMBC' 2 6 2 '2D [1H-31P]-HSQC' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 25 7.8 ambient ? 278 K 2 25 7.8 ambient ? 293 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;5 mM DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*AP*AP*GP*GP*GP*G)-3'), 20 mM sodium phosphate, 93% H2O/7% D2O ; 1 '93% H2O/7% D2O' ;5 mM DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*AP*AP*GP*GP*GP*G)-3'), 20 mM sodium phosphate, 100% D2O ; 2 '100% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model 'VNMRS 500' _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian VNMRS 500' # _pdbx_nmr_refine.entry_id 2M6W _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 8 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M6W _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M6W _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Accelrys Software Inc.' processing Felix ? 1 Goddard 'chemical shift assignment' Sparky ? 2 Goddard 'data analysis' Sparky ? 3 Brunger 'structure solution' X-PLOR ? 4 Brunger refinement X-PLOR ? 5 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' ? 6 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 7 'Koradi, Billeter and Wuthrich' 'data analysis' MOLMOL ? 8 Varian collection VnmrJ ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M6W _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M6W _struct.title 'Solution NMR structure of the d(GGGGTTGGGGTTTTGGGGAAGGGG) quadruplex in sodium conditions' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M6W _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'G-Quadruplex, Folding Topology, DNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 10 N2 ? ? A DG 1 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 10 N1 ? ? A DG 1 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 1 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 1 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 2 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 2 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 16 N2 ? ? A DG 2 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 16 N1 ? ? A DG 2 A DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 8 N2 ? ? A DG 3 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 8 N1 ? ? A DG 3 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 3 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 3 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 7 O6 ? ? A DG 4 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 7 N7 ? ? A DG 4 A DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 4 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 4 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DG 21 O6 ? ? A DG 7 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DG 21 N7 ? ? A DG 7 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 8 N7 ? ? ? 1_555 A DG 22 N2 ? ? A DG 8 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DG 22 N1 ? ? A DG 8 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 23 O6 ? ? A DG 9 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 23 N7 ? ? A DG 9 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DT 13 O4 ? ? A DG 10 A DT 13 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DT 13 N3 ? ? A DG 10 A DT 13 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog25 hydrog ? ? A DG 10 N7 ? ? ? 1_555 A DG 24 N2 ? ? A DG 10 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DG 24 N1 ? ? A DG 10 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DT 11 O2 ? ? ? 1_555 A DT 13 N3 ? ? A DT 11 A DT 13 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog28 hydrog ? ? A DT 11 N3 ? ? ? 1_555 A DT 14 O4 ? ? A DT 11 A DT 14 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog29 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 24 O6 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 24 N7 ? ? A DG 15 A DG 24 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 16 N7 ? ? ? 1_555 A DG 23 N2 ? ? A DG 16 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 16 O6 ? ? ? 1_555 A DG 23 N1 ? ? A DG 16 A DG 23 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A DG 17 N1 ? ? ? 1_555 A DG 22 O6 ? ? A DG 17 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A DG 17 N2 ? ? ? 1_555 A DG 22 N7 ? ? A DG 17 A DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A DG 18 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 18 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A DG 18 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 18 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2M6W _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DT 5 5 5 DT DT A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DA 19 19 19 DA DA A . n A 1 20 DA 20 20 20 DA DA A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DG 23 23 23 DG DG A . n A 1 24 DG 24 24 24 DG DG A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-23 2 'Structure model' 1 1 2014-10-22 3 'Structure model' 1 2 2018-08-29 4 'Structure model' 1 3 2018-10-31 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' citation_author 3 4 'Structure model' citation 4 4 'Structure model' citation_author 5 5 'Structure model' database_2 6 5 'Structure model' pdbx_database_status 7 5 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.country' 2 3 'Structure model' '_citation.journal_abbrev' 3 3 'Structure model' '_citation.journal_id_CSD' 4 3 'Structure model' '_citation.journal_id_ISSN' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.pdbx_database_id_DOI' 7 3 'Structure model' '_citation.title' 8 3 'Structure model' '_citation.year' 9 4 'Structure model' '_citation.page_first' 10 4 'Structure model' '_citation.page_last' 11 4 'Structure model' '_citation.pdbx_database_id_PubMed' 12 4 'Structure model' '_citation.title' 13 4 'Structure model' '_citation_author.identifier_ORCID' 14 5 'Structure model' '_database_2.pdbx_DOI' 15 5 'Structure model' '_database_2.pdbx_database_accession' 16 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 17 5 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*AP*AP*GP*GP*GP*G)-3')-1 ; ? 5 mM ? 1 'sodium phosphate-2' 20 ? mM ? 1 ;DNA (5'-D(*GP*GP*GP*GP*TP*TP*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*GP*AP*AP*GP*GP*GP*G)-3')-3 ; ? 5 mM ? 2 'sodium phosphate-4' 20 ? mM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2M6W _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1024 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 496 _pdbx_nmr_constraints.NOE_long_range_total_count 209 _pdbx_nmr_constraints.NOE_medium_range_total_count 68 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 251 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 7 _pdbx_validate_rmsd_bond.auth_atom_id_1 C6 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 12 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N1 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 12 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.336 _pdbx_validate_rmsd_bond.bond_target_value 1.378 _pdbx_validate_rmsd_bond.bond_deviation -0.042 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.007 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.80 122.90 -4.10 0.60 N 2 1 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 121.64 118.00 3.64 0.60 N 3 1 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.24 122.90 -3.66 0.60 N 4 1 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.07 122.90 -3.83 0.60 N 5 1 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 117.92 122.90 -4.98 0.60 N 6 1 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.56 122.90 -4.34 0.60 N 7 1 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.25 122.90 -3.65 0.60 N 8 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.31 108.30 2.01 0.30 N 9 2 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.92 122.90 -3.98 0.60 N 10 2 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 121.70 118.00 3.70 0.60 N 11 2 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.93 122.90 -3.97 0.60 N 12 2 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.92 122.90 -3.98 0.60 N 13 2 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.26 122.90 -4.64 0.60 N 14 2 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.59 122.90 -4.31 0.60 N 15 2 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.00 122.90 -3.90 0.60 N 16 3 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.16 108.30 1.86 0.30 N 17 3 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.10 122.90 -3.80 0.60 N 18 3 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 121.64 118.00 3.64 0.60 N 19 3 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.18 122.90 -3.72 0.60 N 20 3 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.08 122.90 -3.82 0.60 N 21 3 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.07 122.90 -4.83 0.60 N 22 3 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.95 122.90 -3.95 0.60 N 23 3 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.13 122.90 -3.77 0.60 N 24 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.43 108.30 2.13 0.30 N 25 4 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.85 122.90 -4.05 0.60 N 26 4 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 121.61 118.00 3.61 0.60 N 27 4 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.24 122.90 -3.66 0.60 N 28 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.23 108.30 1.93 0.30 N 29 4 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.25 122.90 -4.65 0.60 N 30 4 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.96 122.90 -3.94 0.60 N 31 5 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.77 122.90 -4.13 0.60 N 32 5 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 121.71 118.00 3.71 0.60 N 33 5 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.88 122.90 -4.02 0.60 N 34 5 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.06 122.90 -3.84 0.60 N 35 5 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 117.95 122.90 -4.95 0.60 N 36 5 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.46 122.90 -4.44 0.60 N 37 5 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.17 122.90 -3.73 0.60 N 38 6 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.22 108.30 1.92 0.30 N 39 6 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.74 122.90 -4.16 0.60 N 40 6 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 121.79 118.00 3.79 0.60 N 41 6 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.05 122.90 -3.85 0.60 N 42 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.11 108.30 1.81 0.30 N 43 6 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.93 122.90 -3.97 0.60 N 44 6 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.21 122.90 -4.69 0.60 N 45 6 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.05 122.90 -3.85 0.60 N 46 7 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.83 122.90 -4.07 0.60 N 47 7 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 122.01 118.00 4.01 0.60 N 48 7 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.68 122.90 -4.22 0.60 N 49 7 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.88 122.90 -4.02 0.60 N 50 7 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.06 122.90 -4.84 0.60 N 51 7 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.31 122.90 -4.59 0.60 N 52 8 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 118.26 122.90 -4.64 0.60 N 53 8 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 121.97 118.00 3.97 0.60 N 54 8 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.59 122.90 -4.31 0.60 N 55 8 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.31 122.90 -4.59 0.60 N 56 8 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.59 122.90 -4.31 0.60 N 57 8 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.22 122.90 -3.68 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 4 ? ? 0.049 'SIDE CHAIN' 2 1 DT A 5 ? ? 0.057 'SIDE CHAIN' 3 2 DG A 4 ? ? 0.049 'SIDE CHAIN' 4 3 DG A 4 ? ? 0.051 'SIDE CHAIN' 5 3 DT A 5 ? ? 0.063 'SIDE CHAIN' 6 4 DG A 4 ? ? 0.047 'SIDE CHAIN' 7 5 DG A 4 ? ? 0.050 'SIDE CHAIN' 8 6 DT A 5 ? ? 0.067 'SIDE CHAIN' 9 7 DT A 5 ? ? 0.062 'SIDE CHAIN' 10 8 DT A 5 ? ? 0.066 'SIDE CHAIN' #