HEADER CELL ADHESION 18-APR-13 2M77 TITLE [ASP2]RTD-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: [ASP2]RTD-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SOLID PHASE PEPTIDE SYNTHESIS KEYWDS THETA-DEFENSIN, CYCLIC PEPTIDES, CYCLIC CYSTINE LADDER, INTEGRIN- KEYWDS 2 BINDING, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.C.CONIBEAR,A.BOCHEN,K.ROSENGREN,H.KESSLER,D.J.CRAIK REVDAT 3 14-JUN-23 2M77 1 REMARK LINK REVDAT 2 19-FEB-14 2M77 1 JRNL REVDAT 1 05-FEB-14 2M77 0 JRNL AUTH A.C.CONIBEAR,A.BOCHEN,K.J.ROSENGREN,P.STUPAR,C.WANG, JRNL AUTH 2 H.KESSLER,D.J.CRAIK JRNL TITL THE CYCLIC CYSTINE LADDER OF THETA-DEFENSINS AS A STABLE, JRNL TITL 2 BIFUNCTIONAL SCAFFOLD: A PROOF-OF-CONCEPT STUDY USING THE JRNL TITL 3 INTEGRIN-BINDING RGD MOTIF JRNL REF CHEMBIOCHEM V. 15 451 2014 JRNL REFN ISSN 1439-4227 JRNL PMID 24382674 JRNL DOI 10.1002/CBIC.201300568 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR 2.1, CNS 2.1, CYANA REMARK 3 AUTHORS : CCPN (CCPNMR), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED USING THE REMARK 3 SCRIPTS FROM THE RECOORD DATABASE., USED TO CALCULATE REMARK 3 PRELIMINARY STRUCTURES REMARK 4 REMARK 4 2M77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000103295. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM [ASP2]RTD-1-1, 10 UM DSS REMARK 210 -2, 90% H2O/10% D2O; 0.6MM [ASP2] REMARK 210 RTD-1-3, 10 UM DSS-4, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC; 2D DQF-COSY; 2D REMARK 210 1H-1H ECOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR 2.1, TOPSPIN 2.1, CYANA REMARK 210 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LYF RELATED DB: PDB REMARK 900 HIGH RESOLUTION NMR SOLUTION STRUCTURE OF THE THETA-DEFENSIN RTD-1 REMARK 900 RELATED ID: 2M78 RELATED DB: PDB REMARK 900 RELATED ID: 2M79 RELATED DB: PDB REMARK 900 RELATED ID: 19175 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. DBREF 2M77 A 1 18 PDB 2M77 2M77 1 18 SEQRES 1 A 18 GLY ASP CYS ARG CYS LEU CYS ARG ARG GLY VAL CYS ARG SEQRES 2 A 18 CYS ILE CYS THR ARG SHEET 1 A 2 ASP A 2 ARG A 8 0 SHEET 2 A 2 VAL A 11 THR A 17 -1 O ARG A 13 N LEU A 6 SSBOND 1 CYS A 3 CYS A 16 1555 1555 2.03 SSBOND 2 CYS A 5 CYS A 14 1555 1555 2.04 SSBOND 3 CYS A 7 CYS A 12 1555 1555 2.04 LINK N GLY A 1 C ARG A 18 1555 1555 1.28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1