HEADER UNKNOWN FUNCTION 18-APR-13 2M7B TITLE ORF PP_3909 FROM PSEUDOMONAS PUTIDA KT2440 ENCODING A PROTEIN SIMILAR TITLE 2 TO BACTERIOPHAGE LAMBDA EA8.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS PUTIDA; SOURCE 4 ORGANISM_TAXID: 160488; SOURCE 5 STRAIN: KT2440; SOURCE 6 GENE: PP_3909; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PGEX4T2 KEYWDS BACTERIOPHAGE, PUTATIVE TRANSCRIPTION FACTOR, HOMEODOMAIN, ZINC KEYWDS 2 BINDING, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.W.F.DONALDSON REVDAT 2 08-JAN-14 2M7B 1 JRNL REVDAT 1 12-JUN-13 2M7B 0 JRNL AUTH J.J.KWAN,E.SMIRNOVA,S.KHAZAI,F.EVANICS,K.L.MAXWELL, JRNL AUTH 2 L.W.DONALDSON JRNL TITL THE SOLUTION STRUCTURES OF TWO PROPHAGE HOMOLOGUES OF THE JRNL TITL 2 BACTERIOPHAGE LAMBDA EA8.5 PROTEIN REVEAL A NEWLY DISCOVERED JRNL TITL 3 HYBRID HOMEODOMAIN/ZINC-FINGER FOLD. JRNL REF BIOCHEMISTRY V. 52 3612 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23672713 JRNL DOI 10.1021/BI400543W REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 5000 CYCLES REMARK 4 REMARK 4 2M7B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB103299. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.000 REMARK 210 PH : 7.800 REMARK 210 IONIC STRENGTH : 0.150 REMARK 210 PRESSURE : 1.000 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-99% 13C; U-99% 15N] REMARK 210 MOL1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC/HMQC; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HNCO; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CA)CO; 3D REMARK 210 H(CCO)NH; 2D CBHD; 2D CBHE; 3D REMARK 210 (H)C(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : NMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR_ANALYSIS 2.2, CYANA 3, REMARK 210 NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 LEU A 7 REMARK 465 MET A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 TYR A 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 39 110.97 -173.43 REMARK 500 1 ASP A 41 97.48 -40.47 REMARK 500 1 GLU A 84 14.48 -141.54 REMARK 500 1 GLU A 85 157.76 174.53 REMARK 500 2 PHE A 39 113.85 -173.55 REMARK 500 2 ASP A 41 97.50 -40.32 REMARK 500 2 GLU A 84 18.09 -144.46 REMARK 500 2 GLU A 85 155.50 172.20 REMARK 500 3 ASP A 41 97.94 -39.98 REMARK 500 3 GLU A 84 20.64 -140.87 REMARK 500 3 GLU A 85 160.27 163.97 REMARK 500 4 PHE A 39 113.93 -173.20 REMARK 500 4 ASP A 41 97.88 -40.21 REMARK 500 4 VAL A 61 25.73 45.24 REMARK 500 4 GLU A 84 17.97 -142.18 REMARK 500 4 GLU A 85 158.04 173.17 REMARK 500 5 PHE A 39 118.75 -172.17 REMARK 500 5 ASP A 41 95.51 -49.12 REMARK 500 5 GLU A 85 162.24 158.97 REMARK 500 6 PHE A 39 112.63 -172.73 REMARK 500 6 ASP A 41 96.43 -40.64 REMARK 500 6 VAL A 61 140.32 -34.94 REMARK 500 6 ASP A 65 177.72 -52.17 REMARK 500 6 GLU A 84 22.71 -141.93 REMARK 500 6 GLU A 85 148.39 157.69 REMARK 500 7 PHE A 39 119.05 -173.29 REMARK 500 7 ASP A 41 96.30 -38.64 REMARK 500 7 GLU A 84 18.85 -149.71 REMARK 500 7 GLU A 85 135.14 175.11 REMARK 500 8 PHE A 39 113.36 -167.90 REMARK 500 8 ASP A 41 96.95 -42.98 REMARK 500 8 GLU A 85 158.96 161.90 REMARK 500 9 PHE A 39 111.98 -174.86 REMARK 500 9 ASP A 41 97.05 -42.95 REMARK 500 9 ASN A 63 -143.15 -98.72 REMARK 500 9 GLU A 84 23.90 -143.37 REMARK 500 9 GLU A 85 152.67 162.53 REMARK 500 10 PHE A 39 122.22 -171.45 REMARK 500 10 ASP A 41 97.30 -40.43 REMARK 500 10 ASN A 63 -75.40 -51.71 REMARK 500 10 ASP A 66 -178.70 -51.25 REMARK 500 10 GLU A 84 28.42 -146.61 REMARK 500 10 GLU A 85 151.32 158.34 REMARK 500 11 PHE A 39 117.99 -171.11 REMARK 500 11 ASP A 41 96.14 -41.56 REMARK 500 11 ASN A 63 -73.10 -72.65 REMARK 500 11 PHE A 64 -168.92 -171.90 REMARK 500 11 ASP A 66 94.94 -166.70 REMARK 500 11 GLU A 84 20.24 -141.81 REMARK 500 11 GLU A 85 153.45 156.13 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 34 NE2 REMARK 620 2 CYS A 31 SG 117.9 REMARK 620 3 HIS A 34 ND1 55.8 72.7 REMARK 620 4 CYS A 89 SG 110.1 107.2 159.6 REMARK 620 5 CYS A 86 SG 110.8 107.0 96.6 102.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19179 RELATED DB: BMRB REMARK 900 RELATED ID: 2M7A RELATED DB: PDB DBREF 2M7B A 1 92 UNP Q88G17 Q88G17_PSEPK 1 92 SEQADV 2M7B GLY A -1 UNP Q88G17 EXPRESSION TAG SEQADV 2M7B SER A 0 UNP Q88G17 EXPRESSION TAG SEQRES 1 A 94 GLY SER MET GLY GLY ILE LYS ARG LEU MET GLU GLU GLU SEQRES 2 A 94 ASP ALA LYS TYR SER GLU ALA VAL TYR ILE ALA ILE GLU SEQRES 3 A 94 ALA GLY THR LEU ALA GLU CYS GLU VAL HIS GLU GLY THR SEQRES 4 A 94 TYR PHE SER ASP SER GLY ASP ILE SER GLU ALA GLU GLU SEQRES 5 A 94 LEU ALA ARG GLU LYS PHE GLU LYS GLY GLU VAL SER ASN SEQRES 6 A 94 PHE ASP ASP VAL GLU GLU LEU VAL LYS LYS VAL VAL ALA SEQRES 7 A 94 VAL CYS GLU GLU LEU GLY ALA GLU GLU CYS PHE SER CYS SEQRES 8 A 94 ASP PHE ASP HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLU A 17 ALA A 25 1 9 HELIX 2 2 ASP A 44 LYS A 58 1 15 HELIX 3 3 ASP A 66 LEU A 81 1 16 HELIX 4 4 CYS A 86 ASP A 90 5 5 SHEET 1 A 2 LEU A 28 GLU A 30 0 SHEET 2 A 2 TYR A 38 SER A 40 -1 O PHE A 39 N ALA A 29 LINK NE2 HIS A 34 ZN ZN A 101 1555 1555 2.20 LINK SG CYS A 31 ZN ZN A 101 1555 1555 2.30 LINK ND1 HIS A 34 ZN ZN A 101 1555 1555 2.43 LINK SG CYS A 89 ZN ZN A 101 1555 1555 2.45 LINK SG CYS A 86 ZN ZN A 101 1555 1555 2.45 SITE 1 AC1 4 CYS A 31 HIS A 34 CYS A 86 CYS A 89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1