data_2M7D # _entry.id 2M7D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M7D pdb_00002m7d 10.2210/pdb2m7d/pdb RCSB RCSB103301 ? ? BMRB 19183 ? 10.13018/BMR19183 WWPDB D_1000103301 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-25 2 'Structure model' 1 1 2014-01-15 3 'Structure model' 1 2 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M7D _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-04-19 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2m7c PDB 'circular permutation of the Trp-cage' unspecified 2jof PDB 'partly optimized Trp-cage' unspecified 1l2y PDB 'original, non-optimized Trp-cage' unspecified 1rij PDB 'Trp-cage with modified salt-bridge' unspecified 2ldj PDB 'Trp-cage containing D-amino acid' unspecified 2ll5 PDB 'cyclic Trp-cage' unspecified 19183 BMRB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Williams, D.V.' 1 'Andersen, N.H.' 2 'Kier, B.L.' 3 # _citation.id primary _citation.title 'Circular Permutation of the Trp-cage: Fold Rescue upon Addition of a Hydrophobic Staple.' _citation.journal_abbrev 'RSC Adv' _citation.journal_volume 2013 _citation.page_first 19824 _citation.page_last 19829 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2046-2069 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24376912 _citation.pdbx_database_id_DOI 10.1039/C3RA43674H # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Byrne, A.' 1 ? primary 'Kier, B.L.' 2 ? primary 'Williams, D.V.' 3 ? primary 'Scian, M.' 4 ? primary 'Andersen, N.H.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Trp-Cage mini-protein' _entity.formula_weight 2131.283 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'P12W, G10a, G15a' _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'DAYAQWLAD(DAL)GWAS(DAL)RPPPS' _entity_poly.pdbx_seq_one_letter_code_can DAYAQWLADAGWASARPPPS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 TYR n 1 4 ALA n 1 5 GLN n 1 6 TRP n 1 7 LEU n 1 8 ALA n 1 9 ASP n 1 10 DAL n 1 11 GLY n 1 12 TRP n 1 13 ALA n 1 14 SER n 1 15 DAL n 1 16 ARG n 1 17 PRO n 1 18 PRO n 1 19 PRO n 1 20 SER n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 DAL 10 10 10 DAL DAL A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 DAL 15 15 15 DAL DAL A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 SER 20 20 20 SER SER A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M7D _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M7D _struct.title 'Trp-cage 16b P12W: a Hyperstable Miniprotein' _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M7D _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'miniprotein, de novo protein, Trp-cage, circular permutant, microprotein' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2M7D _struct_ref.pdbx_db_accession 2M7D _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code DAYAQWLADAGWASARPPPS _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2M7D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2M7D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 20 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 9 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 2 _struct_conf.end_auth_comp_id ASP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 9 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 9 C ? ? ? 1_555 A DAL 10 N ? ? A ASP 9 A DAL 10 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A DAL 10 C ? ? ? 1_555 A GLY 11 N ? ? A DAL 10 A GLY 11 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale3 covale both ? A SER 14 C ? ? ? 1_555 A DAL 15 N ? ? A SER 14 A DAL 15 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale4 covale both ? A DAL 15 C ? ? ? 1_555 A ARG 16 N ? ? A DAL 15 A ARG 16 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DAL 10 ? 6 'BINDING SITE FOR RESIDUE DAL A 10' AC2 Software A DAL 15 ? 4 'BINDING SITE FOR RESIDUE DAL A 15' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LEU A 7 ? LEU A 7 . ? 1_555 ? 2 AC1 6 ALA A 8 ? ALA A 8 . ? 1_555 ? 3 AC1 6 ASP A 9 ? ASP A 9 . ? 1_555 ? 4 AC1 6 GLY A 11 ? GLY A 11 . ? 1_555 ? 5 AC1 6 TRP A 12 ? TRP A 12 . ? 1_555 ? 6 AC1 6 ALA A 13 ? ALA A 13 . ? 1_555 ? 7 AC2 4 TRP A 12 ? TRP A 12 . ? 1_555 ? 8 AC2 4 ALA A 13 ? ALA A 13 . ? 1_555 ? 9 AC2 4 SER A 14 ? SER A 14 . ? 1_555 ? 10 AC2 4 ARG A 16 ? ARG A 16 . ? 1_555 ? # _pdbx_entry_details.entry_id 2M7D _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 2 ? ? -137.81 -69.42 2 3 ALA A 2 ? ? -128.63 -53.71 3 4 ALA A 2 ? ? 70.82 -74.58 4 7 ALA A 2 ? ? 73.93 -69.87 5 8 ALA A 2 ? ? -141.93 -64.89 6 9 ALA A 2 ? ? -127.19 -64.81 7 11 ALA A 2 ? ? -120.10 -65.81 8 13 ALA A 2 ? ? -124.60 -62.49 9 14 ALA A 2 ? ? -122.94 -67.79 10 15 ALA A 2 ? ? -157.81 -67.93 11 18 ALA A 2 ? ? -152.68 -66.44 12 19 ALA A 2 ? ? -131.22 -68.80 13 21 ALA A 2 ? ? -148.66 -67.42 14 25 ALA A 2 ? ? 74.33 -72.76 15 29 ALA A 2 ? ? 67.78 -75.09 16 30 ALA A 2 ? ? 69.02 -75.87 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 30 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M7D _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M7D _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.contents '50 mM sodium phosphate, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample.component 'sodium phosphate-1' _pdbx_nmr_exptl_sample.concentration 50 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.11 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 280 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.solution_id 1 _pdbx_nmr_exptl.type '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2M7D _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 323 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2M7D _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'Incorporated LJ potential relax as extra final step for improved refinement.' _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.2 1 ? refinement CNS ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 DAL N N N N 57 DAL CA C N R 58 DAL CB C N N 59 DAL C C N N 60 DAL O O N N 61 DAL OXT O N N 62 DAL H H N N 63 DAL H2 H N N 64 DAL HA H N N 65 DAL HB1 H N N 66 DAL HB2 H N N 67 DAL HB3 H N N 68 DAL HXT H N N 69 GLN N N N N 70 GLN CA C N S 71 GLN C C N N 72 GLN O O N N 73 GLN CB C N N 74 GLN CG C N N 75 GLN CD C N N 76 GLN OE1 O N N 77 GLN NE2 N N N 78 GLN OXT O N N 79 GLN H H N N 80 GLN H2 H N N 81 GLN HA H N N 82 GLN HB2 H N N 83 GLN HB3 H N N 84 GLN HG2 H N N 85 GLN HG3 H N N 86 GLN HE21 H N N 87 GLN HE22 H N N 88 GLN HXT H N N 89 GLY N N N N 90 GLY CA C N N 91 GLY C C N N 92 GLY O O N N 93 GLY OXT O N N 94 GLY H H N N 95 GLY H2 H N N 96 GLY HA2 H N N 97 GLY HA3 H N N 98 GLY HXT H N N 99 LEU N N N N 100 LEU CA C N S 101 LEU C C N N 102 LEU O O N N 103 LEU CB C N N 104 LEU CG C N N 105 LEU CD1 C N N 106 LEU CD2 C N N 107 LEU OXT O N N 108 LEU H H N N 109 LEU H2 H N N 110 LEU HA H N N 111 LEU HB2 H N N 112 LEU HB3 H N N 113 LEU HG H N N 114 LEU HD11 H N N 115 LEU HD12 H N N 116 LEU HD13 H N N 117 LEU HD21 H N N 118 LEU HD22 H N N 119 LEU HD23 H N N 120 LEU HXT H N N 121 PRO N N N N 122 PRO CA C N S 123 PRO C C N N 124 PRO O O N N 125 PRO CB C N N 126 PRO CG C N N 127 PRO CD C N N 128 PRO OXT O N N 129 PRO H H N N 130 PRO HA H N N 131 PRO HB2 H N N 132 PRO HB3 H N N 133 PRO HG2 H N N 134 PRO HG3 H N N 135 PRO HD2 H N N 136 PRO HD3 H N N 137 PRO HXT H N N 138 SER N N N N 139 SER CA C N S 140 SER C C N N 141 SER O O N N 142 SER CB C N N 143 SER OG O N N 144 SER OXT O N N 145 SER H H N N 146 SER H2 H N N 147 SER HA H N N 148 SER HB2 H N N 149 SER HB3 H N N 150 SER HG H N N 151 SER HXT H N N 152 TRP N N N N 153 TRP CA C N S 154 TRP C C N N 155 TRP O O N N 156 TRP CB C N N 157 TRP CG C Y N 158 TRP CD1 C Y N 159 TRP CD2 C Y N 160 TRP NE1 N Y N 161 TRP CE2 C Y N 162 TRP CE3 C Y N 163 TRP CZ2 C Y N 164 TRP CZ3 C Y N 165 TRP CH2 C Y N 166 TRP OXT O N N 167 TRP H H N N 168 TRP H2 H N N 169 TRP HA H N N 170 TRP HB2 H N N 171 TRP HB3 H N N 172 TRP HD1 H N N 173 TRP HE1 H N N 174 TRP HE3 H N N 175 TRP HZ2 H N N 176 TRP HZ3 H N N 177 TRP HH2 H N N 178 TRP HXT H N N 179 TYR N N N N 180 TYR CA C N S 181 TYR C C N N 182 TYR O O N N 183 TYR CB C N N 184 TYR CG C Y N 185 TYR CD1 C Y N 186 TYR CD2 C Y N 187 TYR CE1 C Y N 188 TYR CE2 C Y N 189 TYR CZ C Y N 190 TYR OH O N N 191 TYR OXT O N N 192 TYR H H N N 193 TYR H2 H N N 194 TYR HA H N N 195 TYR HB2 H N N 196 TYR HB3 H N N 197 TYR HD1 H N N 198 TYR HD2 H N N 199 TYR HE1 H N N 200 TYR HE2 H N N 201 TYR HH H N N 202 TYR HXT H N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 DAL N CA sing N N 54 DAL N H sing N N 55 DAL N H2 sing N N 56 DAL CA CB sing N N 57 DAL CA C sing N N 58 DAL CA HA sing N N 59 DAL CB HB1 sing N N 60 DAL CB HB2 sing N N 61 DAL CB HB3 sing N N 62 DAL C O doub N N 63 DAL C OXT sing N N 64 DAL OXT HXT sing N N 65 GLN N CA sing N N 66 GLN N H sing N N 67 GLN N H2 sing N N 68 GLN CA C sing N N 69 GLN CA CB sing N N 70 GLN CA HA sing N N 71 GLN C O doub N N 72 GLN C OXT sing N N 73 GLN CB CG sing N N 74 GLN CB HB2 sing N N 75 GLN CB HB3 sing N N 76 GLN CG CD sing N N 77 GLN CG HG2 sing N N 78 GLN CG HG3 sing N N 79 GLN CD OE1 doub N N 80 GLN CD NE2 sing N N 81 GLN NE2 HE21 sing N N 82 GLN NE2 HE22 sing N N 83 GLN OXT HXT sing N N 84 GLY N CA sing N N 85 GLY N H sing N N 86 GLY N H2 sing N N 87 GLY CA C sing N N 88 GLY CA HA2 sing N N 89 GLY CA HA3 sing N N 90 GLY C O doub N N 91 GLY C OXT sing N N 92 GLY OXT HXT sing N N 93 LEU N CA sing N N 94 LEU N H sing N N 95 LEU N H2 sing N N 96 LEU CA C sing N N 97 LEU CA CB sing N N 98 LEU CA HA sing N N 99 LEU C O doub N N 100 LEU C OXT sing N N 101 LEU CB CG sing N N 102 LEU CB HB2 sing N N 103 LEU CB HB3 sing N N 104 LEU CG CD1 sing N N 105 LEU CG CD2 sing N N 106 LEU CG HG sing N N 107 LEU CD1 HD11 sing N N 108 LEU CD1 HD12 sing N N 109 LEU CD1 HD13 sing N N 110 LEU CD2 HD21 sing N N 111 LEU CD2 HD22 sing N N 112 LEU CD2 HD23 sing N N 113 LEU OXT HXT sing N N 114 PRO N CA sing N N 115 PRO N CD sing N N 116 PRO N H sing N N 117 PRO CA C sing N N 118 PRO CA CB sing N N 119 PRO CA HA sing N N 120 PRO C O doub N N 121 PRO C OXT sing N N 122 PRO CB CG sing N N 123 PRO CB HB2 sing N N 124 PRO CB HB3 sing N N 125 PRO CG CD sing N N 126 PRO CG HG2 sing N N 127 PRO CG HG3 sing N N 128 PRO CD HD2 sing N N 129 PRO CD HD3 sing N N 130 PRO OXT HXT sing N N 131 SER N CA sing N N 132 SER N H sing N N 133 SER N H2 sing N N 134 SER CA C sing N N 135 SER CA CB sing N N 136 SER CA HA sing N N 137 SER C O doub N N 138 SER C OXT sing N N 139 SER CB OG sing N N 140 SER CB HB2 sing N N 141 SER CB HB3 sing N N 142 SER OG HG sing N N 143 SER OXT HXT sing N N 144 TRP N CA sing N N 145 TRP N H sing N N 146 TRP N H2 sing N N 147 TRP CA C sing N N 148 TRP CA CB sing N N 149 TRP CA HA sing N N 150 TRP C O doub N N 151 TRP C OXT sing N N 152 TRP CB CG sing N N 153 TRP CB HB2 sing N N 154 TRP CB HB3 sing N N 155 TRP CG CD1 doub Y N 156 TRP CG CD2 sing Y N 157 TRP CD1 NE1 sing Y N 158 TRP CD1 HD1 sing N N 159 TRP CD2 CE2 doub Y N 160 TRP CD2 CE3 sing Y N 161 TRP NE1 CE2 sing Y N 162 TRP NE1 HE1 sing N N 163 TRP CE2 CZ2 sing Y N 164 TRP CE3 CZ3 doub Y N 165 TRP CE3 HE3 sing N N 166 TRP CZ2 CH2 doub Y N 167 TRP CZ2 HZ2 sing N N 168 TRP CZ3 CH2 sing Y N 169 TRP CZ3 HZ3 sing N N 170 TRP CH2 HH2 sing N N 171 TRP OXT HXT sing N N 172 TYR N CA sing N N 173 TYR N H sing N N 174 TYR N H2 sing N N 175 TYR CA C sing N N 176 TYR CA CB sing N N 177 TYR CA HA sing N N 178 TYR C O doub N N 179 TYR C OXT sing N N 180 TYR CB CG sing N N 181 TYR CB HB2 sing N N 182 TYR CB HB3 sing N N 183 TYR CG CD1 doub Y N 184 TYR CG CD2 sing Y N 185 TYR CD1 CE1 sing Y N 186 TYR CD1 HD1 sing N N 187 TYR CD2 CE2 doub Y N 188 TYR CD2 HD2 sing N N 189 TYR CE1 CZ doub Y N 190 TYR CE1 HE1 sing N N 191 TYR CE2 CZ sing Y N 192 TYR CE2 HE2 sing N N 193 TYR CZ OH sing N N 194 TYR OH HH sing N N 195 TYR OXT HXT sing N N 196 # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DMX' # _atom_sites.entry_id 2M7D _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_