HEADER HYDROLASE,LIGASE 07-MAY-13 2M85 TITLE PHD DOMAIN FROM HUMAN SHPRH COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE SHPRH; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SNF2, HISTONE-LINKER, PHD AND RING FINGER DOMAIN-CONTAINING COMPND 5 HELICASE; COMPND 6 EC: 3.6.4.-, 6.3.2.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHPRH, KIAA2023; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-4T3 KEYWDS SHPRH, SNF2, HISTONE LINKER, PHD FINGER, RING FINGER, HELICASE, KEYWDS 2 HYDROLASE,LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.E.S.F.MACHADO,Y.PUSTOVALOVA,A.POZHIDAEVA,F.C.L.ALMEIDA,I.BEZSONOVA, AUTHOR 2 D.M.KORZHNEV REVDAT 2 11-SEP-13 2M85 1 JRNL REVDAT 1 14-AUG-13 2M85 0 JRNL AUTH L.E.MACHADO,Y.PUSTOVALOVA,A.C.KILE,A.POZHIDAEVA, JRNL AUTH 2 K.A.CIMPRICH,F.C.ALMEIDA,I.BEZSONOVA,D.M.KORZHNEV JRNL TITL PHD DOMAIN FROM HUMAN SHPRH. JRNL REF J.BIOMOL.NMR V. 56 393 2013 JRNL REFN ISSN 0925-2738 JRNL PMID 23907177 JRNL DOI 10.1007/S10858-013-9758-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ABACUS-CNS 2.5 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-13. REMARK 100 THE RCSB ID CODE IS RCSB103329. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM [U-100% 13C; U-100% 15N] REMARK 210 HEPES, 150 MM [U-100% 13C; U-100% REMARK 210 15N] SODIUM CHLORIDE, 0.05 MM [U- REMARK 210 100% 13C; U-100% 15N] ZINC ION, 1 REMARK 210 MM [U-100% 13C; U-100% 15N] DTT, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D HNCO; 3D REMARK 210 HCCH-TOCSY; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8, NMRPIPE, TALOS 2.2, REMARK 210 CYANA 2.1, ABACUS-CNS 2.5, MOLMOL REMARK 210 2K.2 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 644 REMARK 465 SER A 645 REMARK 465 PRO A 646 REMARK 465 ASN A 647 REMARK 465 SER A 648 REMARK 465 ARG A 649 REMARK 465 VAL A 650 REMARK 465 ASP A 651 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 665 -76.05 -97.41 REMARK 500 1 ASP A 667 86.36 -151.55 REMARK 500 1 ARG A 671 -63.83 -95.62 REMARK 500 1 CYS A 677 91.71 -61.12 REMARK 500 1 CYS A 680 15.99 -142.15 REMARK 500 1 ILE A 698 -69.32 -108.48 REMARK 500 2 ARG A 671 -70.96 -81.62 REMARK 500 2 CYS A 677 93.87 -63.98 REMARK 500 2 ASN A 690 75.93 68.70 REMARK 500 2 ILE A 698 -71.29 -121.17 REMARK 500 3 THR A 654 -75.47 -98.60 REMARK 500 3 GLU A 665 -75.48 -114.10 REMARK 500 3 ASP A 670 -71.38 -59.91 REMARK 500 3 CYS A 677 86.99 -67.25 REMARK 500 3 ASN A 690 61.81 66.20 REMARK 500 3 GLU A 711 148.10 62.78 REMARK 500 3 VAL A 713 103.79 -53.73 REMARK 500 4 ASP A 667 60.33 -169.22 REMARK 500 4 CYS A 677 87.42 -61.12 REMARK 500 4 ASN A 690 73.54 61.25 REMARK 500 4 ILE A 698 -62.77 -108.01 REMARK 500 5 GLU A 665 -73.43 -126.15 REMARK 500 5 ASP A 667 66.63 -159.56 REMARK 500 5 ASN A 690 70.62 65.61 REMARK 500 5 ILE A 698 -73.38 -109.91 REMARK 500 5 PRO A 712 172.22 -57.43 REMARK 500 6 ARG A 658 82.27 -68.95 REMARK 500 6 PHE A 659 99.07 -65.17 REMARK 500 6 GLU A 665 -76.08 -118.00 REMARK 500 6 CYS A 677 89.94 -54.83 REMARK 500 6 ILE A 698 -72.11 -82.78 REMARK 500 6 GLU A 711 165.86 67.64 REMARK 500 6 PRO A 712 95.07 -63.45 REMARK 500 7 THR A 654 -18.31 70.58 REMARK 500 7 ASP A 667 37.80 -96.13 REMARK 500 7 CYS A 677 93.51 -56.55 REMARK 500 7 HIS A 681 71.63 55.74 REMARK 500 7 ASN A 690 78.60 60.17 REMARK 500 7 ILE A 698 -56.55 -125.62 REMARK 500 8 ASN A 653 86.35 -69.50 REMARK 500 8 GLU A 665 -72.06 -72.40 REMARK 500 8 ASP A 667 67.16 -164.50 REMARK 500 8 ASP A 670 -76.97 -143.73 REMARK 500 8 CYS A 677 90.42 -65.24 REMARK 500 8 ILE A 698 -61.10 -143.20 REMARK 500 9 GLU A 665 -75.52 -82.15 REMARK 500 9 ASP A 670 -64.53 -28.30 REMARK 500 9 ARG A 671 -67.41 -92.42 REMARK 500 9 CYS A 680 18.82 -148.03 REMARK 500 9 MET A 710 -77.34 -79.63 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 685 ND1 REMARK 620 2 CYS A 661 SG 104.7 REMARK 620 3 CYS A 688 SG 106.3 108.2 REMARK 620 4 CYS A 663 SG 109.6 110.5 116.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 706 SG REMARK 620 2 CYS A 677 SG 107.9 REMARK 620 3 CYS A 680 SG 109.9 110.0 REMARK 620 4 CYS A 703 SG 108.8 110.0 110.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FUI RELATED DB: PDB REMARK 900 RELATED ID: 1XWH RELATED DB: PDB REMARK 900 RELATED ID: 1WEP RELATED DB: PDB REMARK 900 RELATED ID: 2JMI RELATED DB: PDB REMARK 900 RELATED ID: 2VPD RELATED DB: PDB REMARK 900 RELATED ID: 2RSD RELATED DB: PDB REMARK 900 RELATED ID: 1X4I RELATED DB: PDB REMARK 900 RELATED ID: 2K16 RELATED DB: PDB REMARK 900 RELATED ID: 2K1J RELATED DB: PDB REMARK 900 RELATED ID: 2KKG RELATED DB: PDB REMARK 900 RELATED ID: 19229 RELATED DB: BMRB DBREF 2M85 A 652 716 UNP Q149N8 SHPRH_HUMAN 652 716 SEQADV 2M85 GLY A 644 UNP Q149N8 EXPRESSION TAG SEQADV 2M85 SER A 645 UNP Q149N8 EXPRESSION TAG SEQADV 2M85 PRO A 646 UNP Q149N8 EXPRESSION TAG SEQADV 2M85 ASN A 647 UNP Q149N8 EXPRESSION TAG SEQADV 2M85 SER A 648 UNP Q149N8 EXPRESSION TAG SEQADV 2M85 ARG A 649 UNP Q149N8 EXPRESSION TAG SEQADV 2M85 VAL A 650 UNP Q149N8 EXPRESSION TAG SEQADV 2M85 ASP A 651 UNP Q149N8 EXPRESSION TAG SEQRES 1 A 73 GLY SER PRO ASN SER ARG VAL ASP PHE ASN THR SER ASP SEQRES 2 A 73 TYR ARG PHE GLU CYS ILE CYS GLY GLU LEU ASP GLN ILE SEQRES 3 A 73 ASP ARG LYS PRO ARG VAL GLN CYS LEU LYS CYS HIS LEU SEQRES 4 A 73 TRP GLN HIS ALA LYS CYS VAL ASN TYR ASP GLU LYS ASN SEQRES 5 A 73 LEU LYS ILE LYS PRO PHE TYR CYS PRO HIS CYS LEU VAL SEQRES 6 A 73 ALA MET GLU PRO VAL SER THR ARG HET ZN A 801 1 HET ZN A 802 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 LYS A 687 VAL A 689 5 3 HELIX 2 2 CYS A 703 GLU A 711 1 9 SHEET 1 A 2 ARG A 674 CYS A 677 0 SHEET 2 A 2 LEU A 682 HIS A 685 -1 O GLN A 684 N VAL A 675 LINK ND1 HIS A 685 ZN ZN A 801 1555 1555 2.07 LINK SG CYS A 661 ZN ZN A 801 1555 1555 2.31 LINK SG CYS A 706 ZN ZN A 802 1555 1555 2.32 LINK SG CYS A 677 ZN ZN A 802 1555 1555 2.33 LINK SG CYS A 680 ZN ZN A 802 1555 1555 2.35 LINK SG CYS A 703 ZN ZN A 802 1555 1555 2.35 LINK SG CYS A 688 ZN ZN A 801 1555 1555 2.36 LINK SG CYS A 663 ZN ZN A 801 1555 1555 2.38 SITE 1 AC1 4 CYS A 661 CYS A 663 HIS A 685 CYS A 688 SITE 1 AC2 4 CYS A 677 CYS A 680 CYS A 703 CYS A 706 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1