HEADER SIGNALING PROTEIN 07-MAY-13 2M87 TITLE STRUCTURAL BASIS OF DNA RECOGNITION BY THE EFFECTOR DOMAIN OF TITLE 2 KLEBSIELLA PNEUMONIAE PMRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN BASR/PMRA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 121-223; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1185418; SOURCE 4 STRAIN: ST512-K30BO; SOURCE 5 GENE: BN18_3635; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET29(+) KEYWDS PMRA, TWO-COMPONENT SIGNALING SYSTEM, EFFECTOR DOMAIN, DNA-BINDING, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR I.WANG,Y.C.LOU,C.CHEN REVDAT 4 15-MAY-24 2M87 1 REMARK REVDAT 3 14-JUN-23 2M87 1 REMARK REVDAT 2 24-AUG-22 2M87 1 JRNL REMARK REVDAT 1 22-JAN-14 2M87 0 JRNL AUTH Y.C.LOU,I.WANG,M.RAJASEKARAN,Y.F.KAO,M.R.HO,S.T.HSU, JRNL AUTH 2 S.H.CHOU,S.H.WU,C.CHEN JRNL TITL SOLUTION STRUCTURE AND TANDEM DNA RECOGNITION OF THE JRNL TITL 2 C-TERMINAL EFFECTOR DOMAIN OF PMRA FROM KLEBSIELLA JRNL TITL 3 PNEUMONIAE. JRNL REF NUCLEIC ACIDS RES. V. 42 4080 2014 JRNL REFN ESSN 1362-4962 JRNL PMID 24371275 JRNL DOI 10.1093/NAR/GKT1345 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000103331. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.03 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-99% 13C; U-99% 15N] REMARK 210 PMRAC-1, 90% H2O/10% D2O; 0.3 MM REMARK 210 [U-99% 13C; U-99% 15N] PMRAC-2, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HBHA(CO) REMARK 210 NH; 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, X-PLOR NIH, TOPSPIN, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 124.74 -171.14 REMARK 500 1 ASP A 62 97.15 45.64 REMARK 500 1 ASN A 63 -113.27 -78.85 REMARK 500 1 GLU A 64 61.61 -150.78 REMARK 500 1 THR A 69 -41.31 -165.89 REMARK 500 1 LYS A 83 -17.74 -46.96 REMARK 500 1 ARG A 90 -178.00 50.41 REMARK 500 1 PHE A 92 -31.94 -134.74 REMARK 500 1 ASN A 98 68.74 -67.65 REMARK 500 1 THR A 102 48.92 -79.29 REMARK 500 2 ARG A 19 75.33 56.44 REMARK 500 2 GLU A 25 -10.79 70.91 REMARK 500 2 TRP A 61 41.86 -87.23 REMARK 500 2 ASP A 62 -55.85 -158.31 REMARK 500 2 ASN A 63 102.55 54.14 REMARK 500 2 GLU A 64 62.74 -157.10 REMARK 500 2 THR A 67 -141.50 -63.86 REMARK 500 2 THR A 69 -7.47 63.06 REMARK 500 2 LYS A 83 -17.17 -44.79 REMARK 500 2 PHE A 92 23.46 -170.47 REMARK 500 2 ASN A 98 -80.25 -53.05 REMARK 500 2 ASN A 99 91.08 -163.76 REMARK 500 3 ASP A 4 141.05 -170.13 REMARK 500 3 ARG A 19 70.69 63.36 REMARK 500 3 GLU A 25 -3.17 64.36 REMARK 500 3 SER A 60 21.19 -165.44 REMARK 500 3 TRP A 61 0.25 -167.35 REMARK 500 3 ASP A 62 -112.71 -60.65 REMARK 500 3 ASN A 63 -90.48 -158.23 REMARK 500 3 GLU A 64 61.90 -168.46 REMARK 500 3 THR A 69 -75.36 -165.58 REMARK 500 3 LYS A 83 -16.68 -44.48 REMARK 500 3 PHE A 92 -81.93 -132.56 REMARK 500 3 ASN A 99 97.49 53.22 REMARK 500 3 ASP A 101 -24.38 -173.52 REMARK 500 3 THR A 102 173.00 -59.10 REMARK 500 4 ARG A 19 67.14 66.31 REMARK 500 4 GLU A 25 -1.65 64.24 REMARK 500 4 ASP A 62 11.60 53.30 REMARK 500 4 GLU A 64 71.84 52.13 REMARK 500 4 THR A 69 -74.14 -165.92 REMARK 500 4 LYS A 83 -17.01 -45.05 REMARK 500 4 ARG A 90 78.94 -61.61 REMARK 500 4 PHE A 92 19.36 -170.87 REMARK 500 4 ASN A 99 97.40 51.10 REMARK 500 5 ASN A 5 107.97 -172.37 REMARK 500 5 ARG A 19 73.66 64.81 REMARK 500 5 GLU A 25 23.13 -154.45 REMARK 500 5 TYR A 59 -163.24 -103.86 REMARK 500 5 SER A 60 -31.97 -171.57 REMARK 500 REMARK 500 THIS ENTRY HAS 178 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19231 RELATED DB: BMRB DBREF 2M87 A 1 103 UNP K4SZJ8 K4SZJ8_KLEPN 121 223 SEQRES 1 A 103 ASN GLN GLY ASP ASN GLU ILE SER VAL GLY ASN LEU ARG SEQRES 2 A 103 LEU ASN VAL THR ARG ARG LEU VAL TRP LEU GLY GLU THR SEQRES 3 A 103 ALA LEU ASP LEU THR PRO LYS GLU TYR ALA LEU LEU SER SEQRES 4 A 103 ARG LEU MET MET LYS ALA GLY SER PRO VAL HIS ARG GLU SEQRES 5 A 103 ILE LEU TYR ASN ASP ILE TYR SER TRP ASP ASN GLU PRO SEQRES 6 A 103 ALA THR ASN THR LEU GLU VAL HIS ILE HIS ASN LEU ARG SEQRES 7 A 103 GLU LYS ILE GLY LYS SER ARG ILE ARG THR VAL ARG GLY SEQRES 8 A 103 PHE GLY TYR MET LEU ALA ASN ASN ILE ASP THR GLU HELIX 1 1 THR A 31 LYS A 44 1 14 HELIX 2 2 ARG A 51 TYR A 59 1 9 HELIX 3 3 THR A 69 GLY A 82 1 14 SHEET 1 A 4 GLU A 6 VAL A 9 0 SHEET 2 A 4 LEU A 12 ASN A 15 -1 O LEU A 14 N ILE A 7 SHEET 3 A 4 LEU A 20 LEU A 23 -1 O TRP A 22 N ARG A 13 SHEET 4 A 4 THR A 26 ALA A 27 -1 O THR A 26 N LEU A 23 SHEET 1 B 3 VAL A 49 HIS A 50 0 SHEET 2 B 3 GLY A 93 LEU A 96 -1 O TYR A 94 N VAL A 49 SHEET 3 B 3 ILE A 86 VAL A 89 -1 N ARG A 87 O MET A 95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1