HEADER RNA BINDING PROTEIN 21-MAY-13 2M8H TITLE RRM DOMAIN OF HUMAN RBM7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 4-94; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BINDING PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SIKORSKY,D.HROSSOVA,S.VANACOVA,R.STEFL REVDAT 1 28-JAN-15 2M8H 0 JRNL AUTH T.SIKORSKY,R.STEFL,D.HROSSOVA,S.VANACOVA JRNL TITL RNA BINDING PROPERTIES OF THE HUMAN NEXT COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER, CYANA REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLMAN (AMBER), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-13. REMARK 100 THE RCSB ID CODE IS RCSB103341. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.15 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-99% 13C; U-99% 15N] REMARK 210 RBM7, 20 MM BISTRIS, 4 MM BETA- REMARK 210 MERCAPTOETHANOL, 200 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HBHA(CO)NH; REMARK 210 3D HNCA; 3D CBCA(CO)NH; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 1 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 1 TYR A 83 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 3 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 3 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 3 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 3 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 4 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 4 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 4 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 4 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 4 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 5 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 5 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 5 TYR A 83 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 5 TYR A 83 CB - CG - CD1 ANGL. DEV. = 4.1 DEGREES REMARK 500 6 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 6 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 6.4 DEGREES REMARK 500 6 TYR A 83 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 6 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 6 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 7 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 7 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 7 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 8 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 8 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 9 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 9 ARG A 92 NH1 - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 9 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 10 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 10 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 10 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 11 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 11 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 11 TYR A 83 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 11 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 12 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 12 ARG A 8 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 12 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 87 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 13 -61.15 -161.11 REMARK 500 1 GLU A 14 7.82 51.33 REMARK 500 1 LYS A 50 105.12 -160.91 REMARK 500 1 ASP A 51 173.32 -53.10 REMARK 500 1 LYS A 65 58.34 -94.68 REMARK 500 1 VAL A 70 119.14 73.52 REMARK 500 1 LEU A 77 -85.13 -89.14 REMARK 500 1 ASN A 78 76.85 26.81 REMARK 500 1 LYS A 81 -176.80 -176.73 REMARK 500 1 LEU A 82 -11.69 -141.16 REMARK 500 2 PHE A 4 -40.61 -130.11 REMARK 500 2 ASP A 51 171.99 -54.48 REMARK 500 2 VAL A 68 32.52 -85.34 REMARK 500 2 PRO A 71 57.82 -106.75 REMARK 500 2 MET A 74 -8.63 -59.07 REMARK 500 2 LEU A 77 -92.39 -98.29 REMARK 500 2 ASN A 78 69.92 32.89 REMARK 500 2 SER A 93 30.28 -94.42 REMARK 500 3 GLU A 3 135.20 68.16 REMARK 500 3 GLU A 5 46.39 -107.33 REMARK 500 3 ALA A 40 31.40 -87.60 REMARK 500 3 PRO A 42 101.55 -49.68 REMARK 500 3 ASP A 51 172.64 -57.25 REMARK 500 3 LEU A 77 -92.75 -120.64 REMARK 500 3 ASN A 78 74.75 26.24 REMARK 500 3 LYS A 81 -173.23 -171.31 REMARK 500 3 LEU A 82 -39.05 -143.33 REMARK 500 3 SER A 95 52.54 -93.32 REMARK 500 4 PHE A 4 -37.44 -142.10 REMARK 500 4 ARG A 8 51.63 -140.23 REMARK 500 4 PRO A 56 15.81 -66.53 REMARK 500 4 LEU A 77 -83.60 -97.13 REMARK 500 4 ASN A 78 66.41 24.19 REMARK 500 5 GLN A 9 -78.05 -78.23 REMARK 500 5 GLN A 10 -30.76 52.03 REMARK 500 5 PRO A 56 10.04 -67.52 REMARK 500 5 VAL A 70 66.67 36.65 REMARK 500 5 LEU A 77 -94.58 -98.31 REMARK 500 5 ASN A 78 79.35 21.84 REMARK 500 5 LEU A 82 -44.35 -136.31 REMARK 500 6 PHE A 4 -47.36 -138.16 REMARK 500 6 ASP A 51 174.59 -54.04 REMARK 500 6 PRO A 56 22.25 -74.61 REMARK 500 6 LEU A 77 -106.99 -100.80 REMARK 500 6 ASN A 78 70.69 42.24 REMARK 500 6 ARG A 92 58.76 -91.54 REMARK 500 7 LEU A 12 -4.49 46.01 REMARK 500 7 ASP A 51 164.20 -49.20 REMARK 500 7 PRO A 56 14.83 -67.26 REMARK 500 7 LYS A 57 18.06 55.27 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE A 64 0.09 SIDE CHAIN REMARK 500 1 TYR A 83 0.06 SIDE CHAIN REMARK 500 1 ARG A 85 0.08 SIDE CHAIN REMARK 500 2 ARG A 8 0.10 SIDE CHAIN REMARK 500 2 ARG A 85 0.11 SIDE CHAIN REMARK 500 3 ARG A 17 0.10 SIDE CHAIN REMARK 500 3 TYR A 72 0.08 SIDE CHAIN REMARK 500 5 PHE A 64 0.08 SIDE CHAIN REMARK 500 5 ARG A 85 0.08 SIDE CHAIN REMARK 500 6 ARG A 92 0.08 SIDE CHAIN REMARK 500 8 TYR A 83 0.09 SIDE CHAIN REMARK 500 9 ARG A 92 0.14 SIDE CHAIN REMARK 500 10 ARG A 17 0.09 SIDE CHAIN REMARK 500 11 PHE A 37 0.08 SIDE CHAIN REMARK 500 11 TYR A 72 0.08 SIDE CHAIN REMARK 500 11 ARG A 92 0.08 SIDE CHAIN REMARK 500 13 ARG A 7 0.10 SIDE CHAIN REMARK 500 13 PHE A 61 0.09 SIDE CHAIN REMARK 500 13 TYR A 83 0.10 SIDE CHAIN REMARK 500 14 ARG A 8 0.11 SIDE CHAIN REMARK 500 14 ARG A 17 0.09 SIDE CHAIN REMARK 500 15 ARG A 7 0.09 SIDE CHAIN REMARK 500 15 ARG A 17 0.12 SIDE CHAIN REMARK 500 15 PHE A 20 0.10 SIDE CHAIN REMARK 500 16 ARG A 85 0.11 SIDE CHAIN REMARK 500 16 ARG A 92 0.10 SIDE CHAIN REMARK 500 17 TYR A 83 0.07 SIDE CHAIN REMARK 500 18 TYR A 72 0.08 SIDE CHAIN REMARK 500 19 ARG A 7 0.10 SIDE CHAIN REMARK 500 19 ARG A 8 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19252 RELATED DB: BMRB DBREF 2M8H A 11 101 UNP Q9Y580 RBM7_HUMAN 4 94 SEQADV 2M8H GLY A 1 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H SER A 2 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H GLU A 3 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H PHE A 4 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H GLU A 5 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H LEU A 6 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H ARG A 7 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H ARG A 8 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H GLN A 9 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H GLN A 10 UNP Q9Y580 EXPRESSION TAG SEQADV 2M8H LEU A 12 UNP Q9Y580 ALA 5 CONFLICT SEQRES 1 A 101 GLY SER GLU PHE GLU LEU ARG ARG GLN GLN ALA LEU ALA SEQRES 2 A 101 GLU ALA ASP ARG THR LEU PHE VAL GLY ASN LEU GLU THR SEQRES 3 A 101 LYS VAL THR GLU GLU LEU LEU PHE GLU LEU PHE HIS GLN SEQRES 4 A 101 ALA GLY PRO VAL ILE LYS VAL LYS ILE PRO LYS ASP LYS SEQRES 5 A 101 ASP GLY LYS PRO LYS GLN PHE ALA PHE VAL ASN PHE LYS SEQRES 6 A 101 HIS GLU VAL SER VAL PRO TYR ALA MET ASN LEU LEU ASN SEQRES 7 A 101 GLY ILE LYS LEU TYR GLY ARG PRO ILE LYS ILE GLN PHE SEQRES 8 A 101 ARG SER GLY SER SER HIS ALA PRO GLN ASP HELIX 1 1 THR A 29 HIS A 38 1 10 HELIX 2 2 TYR A 72 LEU A 77 1 6 SHEET 1 A 4 VAL A 43 LYS A 47 0 SHEET 2 A 4 PHE A 59 PHE A 64 -1 O ASN A 63 N LYS A 45 SHEET 3 A 4 THR A 18 GLY A 22 -1 N LEU A 19 O VAL A 62 SHEET 4 A 4 LYS A 88 GLN A 90 -1 O LYS A 88 N GLY A 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1