HEADER UNKNOWN FUNCTION 29-MAY-13 2M8X TITLE RESTRAINED CS-ROSETTA SOLUTION NMR STRUCTURE OF THE CARDB DOMAIN OF TITLE 2 PF1109 FROM PYROCOCCUS FURIOSUS. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET PFR193A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARDB DOMAIN (UNP RESIDUES 436-540); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PF1109; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PFR193A-436-540-21.36 KEYWDS CARDB DOMAIN, PFAM 07705, UNKNOWN FUNCTION, STRUCTURAL GENOMICS, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PSI-BIOLOGY, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.MAO,R.T.TEJERO,J.M.ARAMINI,D.A.SNYDER,G.T.MONTELIONE,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2M8X 1 REMARK SEQADV REVDAT 2 05-FEB-14 2M8X 1 JRNL REVDAT 1 21-AUG-13 2M8X 0 JRNL AUTH R.TEJERO,D.SNYDER,B.MAO,J.M.ARAMINI,G.T.MONTELIONE JRNL TITL PDBSTAT: A UNIVERSAL RESTRAINT CONVERTER AND RESTRAINT JRNL TITL 2 ANALYSIS SOFTWARE PACKAGE FOR PROTEIN NMR. JRNL REF J.BIOMOL.NMR V. 56 337 2013 JRNL REFN ISSN 0925-2738 JRNL PMID 23897031 JRNL DOI 10.1007/S10858-013-9753-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, ROSETTA 3 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), ROHL, STRAUSS, MISURA, REMARK 3 AND BAKER (ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE CALCULATED BY REMARK 3 RESTRAINED CS-ROSETTA METHOD USING NOE-BASED DISTANCE AND REMARK 3 DIHEDRAL ANGLE RESTRAINTS FROM THE ORIGINAL CNS-WATER REFINED REMARK 3 STRUCTURE CALCULATIONS REMARK 4 REMARK 4 2M8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000103357. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.65 MM [U-100% 13C; U-100% 15N] REMARK 210 PFR193A, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 50 UM DSS, 10 % REMARK 210 D2O, 90 % H2O, 90% H2O/10% D2O; REMARK 210 0.43 MM [U-5% 13C; U-100% 15N] REMARK 210 PFR193A, 20 MM MES, 200 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 50 UM DSS, 10 % REMARK 210 D2O, 90 % H2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-13C HSQC HIGH REMARK 210 RESOLUTION (L/V METHYL REMARK 210 STEREOASSIGNMENT); 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HN(CO)CA; 3D HNCA; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D CCH-TOCSY; 3D HNHA; REMARK 210 2D 1H-15N HETNOE; 1D 15N T1 AND REMARK 210 T2 REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, NMRPIPE 2.3, SPARKY REMARK 210 3.112, PINE 1.0, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.2.1, PSVS 1.3, REMARK 210 MOLPROBITY 3.15, PDBSTAT 5.9, REMARK 210 TALOS PLUS REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE FIRST REPRESENTATIVE STRUCTURE IN THE ENSEMBLE IS THE REMARK 210 MEDOID STRUCTURE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 GLU A 436 -158.44 -109.12 REMARK 500 2 ASN A 531 24.69 -142.47 REMARK 500 2 LEU A 541 45.79 -87.35 REMARK 500 3 ASN A 521 61.99 61.75 REMARK 500 4 ASN A 521 64.00 63.37 REMARK 500 4 LEU A 541 39.28 -95.43 REMARK 500 5 ASP A 518 25.24 105.59 REMARK 500 5 ASN A 521 66.02 66.37 REMARK 500 6 ASN A 521 60.72 61.14 REMARK 500 6 ASN A 527 67.23 -110.08 REMARK 500 9 THR A 522 75.15 -11.66 REMARK 500 10 ASP A 439 62.10 -116.56 REMARK 500 11 ASP A 518 60.99 37.98 REMARK 500 11 ASN A 521 60.17 63.10 REMARK 500 12 ASN A 521 64.54 63.29 REMARK 500 13 ASP A 448 -11.93 75.59 REMARK 500 14 ASP A 439 76.09 -111.01 REMARK 500 15 ASP A 518 85.79 22.62 REMARK 500 15 GLU A 528 -30.04 -130.04 REMARK 500 15 LEU A 541 55.83 -111.03 REMARK 500 16 ASN A 531 25.72 164.68 REMARK 500 18 ASN A 521 57.93 -117.27 REMARK 500 18 THR A 522 97.57 -58.13 REMARK 500 19 ASN A 521 107.73 -29.81 REMARK 500 19 ASN A 527 -121.99 -115.34 REMARK 500 19 GLU A 528 -45.56 -163.49 REMARK 500 20 ASP A 518 85.06 2.83 REMARK 500 20 ASN A 521 -65.01 76.98 REMARK 500 20 THR A 522 35.05 36.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 435 GLU A 436 3 131.17 REMARK 500 GLU A 436 PHE A 437 3 -146.69 REMARK 500 MET A 435 GLU A 436 5 148.56 REMARK 500 MET A 435 GLU A 436 6 135.44 REMARK 500 MET A 435 GLU A 436 8 31.16 REMARK 500 GLU A 436 PHE A 437 8 -147.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16385 RELATED DB: BMRB REMARK 900 NMR CHEMICAL SHIFT ASSIGNMENTS REMARK 900 RELATED ID: 2KL6 RELATED DB: PDB REMARK 900 CYANA/CNS-WATER REFINED STRUCTURE DETERMINATION REMARK 900 RELATED ID: NESG-PFR193A RELATED DB: TARGETTRACK DBREF 2M8X A 436 540 UNP Q8U1U6 Q8U1U6_PYRFU 436 540 SEQADV 2M8X MET A 435 UNP Q8U1U6 INITIATING METHIONINE SEQADV 2M8X SER A 502 UNP Q8U1U6 ASN 502 ENGINEERED MUTATION SEQADV 2M8X LEU A 541 UNP Q8U1U6 EXPRESSION TAG SEQADV 2M8X GLU A 542 UNP Q8U1U6 EXPRESSION TAG SEQADV 2M8X HIS A 543 UNP Q8U1U6 EXPRESSION TAG SEQADV 2M8X HIS A 544 UNP Q8U1U6 EXPRESSION TAG SEQADV 2M8X HIS A 545 UNP Q8U1U6 EXPRESSION TAG SEQADV 2M8X HIS A 546 UNP Q8U1U6 EXPRESSION TAG SEQADV 2M8X HIS A 547 UNP Q8U1U6 EXPRESSION TAG SEQADV 2M8X HIS A 548 UNP Q8U1U6 EXPRESSION TAG SEQRES 1 A 114 MET GLU PHE PRO ASP LEU THR VAL GLU ILE LYS GLY PRO SEQRES 2 A 114 ASP VAL VAL GLY VAL ASN LYS LEU ALA GLU TYR GLU VAL SEQRES 3 A 114 HIS VAL LYS ASN LEU GLY GLY ILE GLY VAL PRO SER THR SEQRES 4 A 114 LYS VAL ARG VAL TYR ILE ASN GLY THR LEU TYR LYS ASN SEQRES 5 A 114 TRP THR VAL SER LEU GLY PRO LYS GLU GLU LYS VAL LEU SEQRES 6 A 114 THR PHE SER TRP THR PRO THR GLN GLU GLY MET TYR ARG SEQRES 7 A 114 ILE ASN ALA THR VAL ASP GLU GLU ASN THR VAL VAL GLU SEQRES 8 A 114 LEU ASN GLU ASN ASN ASN VAL ALA THR PHE ASP VAL SER SEQRES 9 A 114 VAL VAL LEU GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 3 LEU A 440 LYS A 445 0 SHEET 2 A 3 ALA A 456 ASN A 464 -1 O HIS A 461 N GLU A 443 SHEET 3 A 3 GLU A 496 TRP A 503 -1 O LEU A 499 N VAL A 460 SHEET 1 B 5 VAL A 449 GLY A 451 0 SHEET 2 B 5 VAL A 532 VAL A 540 1 O VAL A 540 N VAL A 450 SHEET 3 B 5 GLY A 509 VAL A 517 -1 N ILE A 513 O PHE A 535 SHEET 4 B 5 LYS A 474 ILE A 479 -1 N TYR A 478 O ASN A 514 SHEET 5 B 5 THR A 482 THR A 488 -1 O THR A 482 N ILE A 479 CISPEP 1 MET A 435 GLU A 436 1 -25.62 CISPEP 2 MET A 435 GLU A 436 2 14.09 CISPEP 3 MET A 435 GLU A 436 13 -2.94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1