HEADER DNA BINDING PROTEIN 18-JUN-13 2M9M TITLE SOLUTION STRUCTURE OF ERCC4 DOMAIN OF HUMAN FAAP24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FANCONI ANEMIA-ASSOCIATED PROTEIN OF 24 KDA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ERCC4 DOMAIN, UNP RESIDUES 1-139; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAAP24, C19ORF40; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-22B KEYWDS FANCONI ANEMIA, FAAP24, ERCC4 DOMAIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR F.WU,X.HAN,C.SHI,W.GONG,C.TIAN REVDAT 4 15-MAY-24 2M9M 1 REMARK REVDAT 3 14-JUN-23 2M9M 1 REMARK REVDAT 2 24-AUG-22 2M9M 1 JRNL REMARK SEQADV REVDAT 1 18-SEP-13 2M9M 0 JRNL AUTH Y.WANG,X.HAN,F.WU,J.W.LEUNG,M.G.LOWERY,H.DO,J.CHEN,C.SHI, JRNL AUTH 2 C.TIAN,L.LI,W.GONG JRNL TITL STRUCTURE ANALYSIS OF FAAP24 REVEALS SINGLE-STRANDED JRNL TITL 2 DNA-BINDING ACTIVITY AND DOMAIN FUNCTIONS IN DNA DAMAGE JRNL TITL 3 RESPONSE. JRNL REF CELL RES. V. 23 1215 2013 JRNL REFN ISSN 1001-0602 JRNL PMID 23999858 JRNL DOI 10.1038/CR.2013.124 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, X-PLOR NIH REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000103382. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.35 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-0.8 MM [U-100% 13C; U-100% REMARK 210 15N] FAAP24-ERCC4-1, 50 MM REMARK 210 POTASSIUM PHOSPHATE-2, 50 MM REMARK 210 SODIUM CHLORIDE-3, 1 MM BETA- REMARK 210 MERCAPTOETHANOL-4, 0.5 MM EDTA-5, REMARK 210 90% H2O/10% D2O; 0.5-0.8 MM [U- REMARK 210 100% 13C; U-100% 15N] FAAP24- REMARK 210 ERCC4-6, 50 MM POTASSIUM REMARK 210 PHOSPHATE-7, 50 MM SODIUM REMARK 210 CHLORIDE-8, 1 MM BETA- REMARK 210 MERCAPTOETHANOL-9, 0.5 MM EDTA- REMARK 210 10, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HBHA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TALOS, SPARKY, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 LEU A 140 REMARK 465 GLU A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H3 MET A 1 H GLU A 2 1.34 REMARK 500 O GLU A 124 H LEU A 128 1.54 REMARK 500 O ALA A 125 H VAL A 129 1.55 REMARK 500 O SER A 97 H PHE A 101 1.55 REMARK 500 O THR A 108 H LEU A 112 1.58 REMARK 500 O LEU A 104 HG1 THR A 108 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 7 49.25 -107.10 REMARK 500 1 ASP A 8 73.34 35.33 REMARK 500 1 VAL A 12 27.42 -74.00 REMARK 500 1 PRO A 15 -4.75 -59.11 REMARK 500 1 LEU A 16 -89.15 -68.57 REMARK 500 1 TRP A 25 19.34 -67.89 REMARK 500 1 LYS A 37 -43.10 -152.01 REMARK 500 1 PRO A 48 164.35 -47.87 REMARK 500 1 ALA A 68 -71.63 -66.41 REMARK 500 1 SER A 82 -117.28 -67.92 REMARK 500 1 ASN A 83 -93.74 -121.02 REMARK 500 1 THR A 94 -74.26 -126.14 REMARK 500 1 ARG A 95 -70.30 -140.84 REMARK 500 1 SER A 97 -91.39 -68.70 REMARK 500 1 GLU A 98 -27.57 -36.41 REMARK 500 1 MET A 114 -161.09 -73.04 REMARK 500 1 PRO A 118 171.56 -53.25 REMARK 500 1 VAL A 119 -113.71 -143.06 REMARK 500 1 ALA A 120 -37.84 -177.51 REMARK 500 1 LYS A 138 153.40 -35.65 REMARK 500 2 ASP A 7 57.02 -117.88 REMARK 500 2 ASP A 8 51.62 28.82 REMARK 500 2 PRO A 11 87.42 -64.39 REMARK 500 2 PRO A 48 176.93 -54.95 REMARK 500 2 SER A 53 -143.54 -160.01 REMARK 500 2 ALA A 68 35.25 -154.42 REMARK 500 2 ARG A 73 -35.67 -36.28 REMARK 500 2 ASN A 84 45.76 -147.03 REMARK 500 2 THR A 94 -108.10 -151.08 REMARK 500 2 ARG A 95 -74.70 -130.07 REMARK 500 2 MET A 96 -7.16 -55.36 REMARK 500 2 SER A 97 -88.07 -54.92 REMARK 500 2 LEU A 117 88.59 -157.29 REMARK 500 2 VAL A 119 -107.03 -108.23 REMARK 500 2 ALA A 120 -30.55 179.41 REMARK 500 2 THR A 137 40.79 -103.88 REMARK 500 2 LYS A 138 159.15 -49.84 REMARK 500 3 LYS A 3 41.06 -173.96 REMARK 500 3 PRO A 5 154.71 -44.16 REMARK 500 3 ASP A 7 40.11 -106.02 REMARK 500 3 ASP A 8 -76.69 79.89 REMARK 500 3 THR A 9 44.81 33.39 REMARK 500 3 LEU A 16 -43.47 -132.44 REMARK 500 3 ARG A 26 85.04 26.33 REMARK 500 3 SER A 28 -143.96 74.31 REMARK 500 3 GLN A 29 -20.08 -39.92 REMARK 500 3 MET A 34 -33.98 -36.85 REMARK 500 3 LYS A 37 -41.33 -138.58 REMARK 500 3 PRO A 48 -173.74 -59.27 REMARK 500 3 SER A 53 147.69 -173.35 REMARK 500 REMARK 500 THIS ENTRY HAS 211 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19302 RELATED DB: BMRB REMARK 900 RELATED ID: 2M9N RELATED DB: PDB DBREF 2M9M A 1 139 UNP Q9BTP7 FAP24_HUMAN 1 139 SEQADV 2M9M LEU A 140 UNP Q9BTP7 EXPRESSION TAG SEQADV 2M9M GLU A 141 UNP Q9BTP7 EXPRESSION TAG SEQADV 2M9M HIS A 142 UNP Q9BTP7 EXPRESSION TAG SEQADV 2M9M HIS A 143 UNP Q9BTP7 EXPRESSION TAG SEQADV 2M9M HIS A 144 UNP Q9BTP7 EXPRESSION TAG SEQADV 2M9M HIS A 145 UNP Q9BTP7 EXPRESSION TAG SEQADV 2M9M HIS A 146 UNP Q9BTP7 EXPRESSION TAG SEQADV 2M9M HIS A 147 UNP Q9BTP7 EXPRESSION TAG SEQRES 1 A 147 MET GLU LYS ASN PRO PRO ASP ASP THR GLY PRO VAL HIS SEQRES 2 A 147 VAL PRO LEU GLY HIS ILE VAL ALA ASN GLU LYS TRP ARG SEQRES 3 A 147 GLY SER GLN LEU ALA GLN GLU MET GLN GLY LYS ILE LYS SEQRES 4 A 147 LEU ILE PHE GLU ASP GLY LEU THR PRO ASP PHE TYR LEU SEQRES 5 A 147 SER ASN ARG CYS CYS ILE LEU TYR VAL THR GLU ALA ASP SEQRES 6 A 147 LEU VAL ALA GLY ASN GLY TYR ARG LYS ARG LEU VAL ARG SEQRES 7 A 147 VAL ARG ASN SER ASN ASN LEU LYS GLY ILE VAL VAL VAL SEQRES 8 A 147 GLU LYS THR ARG MET SER GLU GLN TYR PHE PRO ALA LEU SEQRES 9 A 147 GLN LYS PHE THR VAL LEU ASP LEU GLY MET VAL LEU LEU SEQRES 10 A 147 PRO VAL ALA SER GLN MET GLU ALA SER CYS LEU VAL ILE SEQRES 11 A 147 GLN LEU VAL GLN GLU GLN THR LYS GLU LEU GLU HIS HIS SEQRES 12 A 147 HIS HIS HIS HIS HELIX 1 1 LYS A 24 GLY A 27 5 4 HELIX 2 2 GLN A 29 GLN A 35 1 7 HELIX 3 3 GLU A 63 GLY A 69 1 7 HELIX 4 4 GLY A 71 ASN A 81 1 11 HELIX 5 5 ARG A 95 GLY A 113 1 19 HELIX 6 6 SER A 121 LYS A 138 1 18 SHEET 1 A 6 LEU A 40 GLU A 43 0 SHEET 2 A 6 ILE A 19 ASN A 22 1 N ILE A 19 O ILE A 41 SHEET 3 A 6 PHE A 50 TYR A 51 -1 O TYR A 51 N VAL A 20 SHEET 4 A 6 CYS A 57 THR A 62 -1 O ILE A 58 N PHE A 50 SHEET 5 A 6 ILE A 88 GLU A 92 1 O VAL A 90 N LEU A 59 SHEET 6 A 6 VAL A 115 LEU A 116 1 O VAL A 115 N VAL A 89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1