HEADER VIRAL PROTEIN 19-JUN-13 2M9U TITLE SOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN (CTD) OF MOLONEY TITLE 2 MURINE LEUKEMIA VIRUS INTEGRASE, NORTHEAST STRUCTURAL GENOMICS TARGET TITLE 3 OR41A COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRASE P46; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING C TERMINAL DOMAIN (CTD) RESIDUES 1659-1738; COMPND 5 SYNONYM: IN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOLONEY MURINE LEUKEMIA VIRUS ISOLATE SHINNICK; SOURCE 3 ORGANISM_TAXID: 928306; SOURCE 4 GENE: GAG-POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15NESG KEYWDS SH3 DOMAIN, NESG, OR41A-15.1, PSI-BIOLOGY, NORTHEAST STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.AIYER,P.ROSSI,W.M.SCHNEIDER,A.CHANDER,M.J.ROTH,G.T.MONTELIONE, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2M9U 1 REMARK DBREF SEQADV REVDAT 3 04-JUN-14 2M9U 1 JRNL REVDAT 2 02-APR-14 2M9U 1 JRNL REVDAT 1 18-DEC-13 2M9U 0 JRNL AUTH S.AIYER,G.V.SWAPNA,N.MALANI,J.M.ARAMINI,W.M.SCHNEIDER, JRNL AUTH 2 M.R.PLUMB,M.GHANEM,R.C.LARUE,A.SHARMA,B.STUDAMIRE, JRNL AUTH 3 M.KVARATSKHELIA,F.D.BUSHMAN,G.T.MONTELIONE,M.J.ROTH JRNL TITL ALTERING MURINE LEUKEMIA VIRUS INTEGRATION THROUGH JRNL TITL 2 DISRUPTION OF THE INTEGRASE AND BET PROTEIN FAMILY JRNL TITL 3 INTERACTION. JRNL REF NUCLEIC ACIDS RES. V. 42 5917 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24623816 JRNL DOI 10.1093/NAR/GKU175 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN 2.2.1, CNS 2.0.6 REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS DETERMINED USING REMARK 3 TRIPLE RESONANCE NMR SPECTROSCOPY. AUTOMATED BACKBONE REMARK 3 ASSIGNMENTS WERE MADE USING AUTOASSIGN SOFTWARE. SIDECHAIN REMARK 3 ASSIGNMENTS WERE COMPLETED MANUALLY. INITIAL NOESY ASSIGNMENTS REMARK 3 FOR THE MONOMER WERE MADE USING AUTOSTRUCTURE AND CYANA-2.1. THE REMARK 3 OLIGOMERIC STATE WAS CONFIRMED TO BE A MONOMER BY MEASURING THE REMARK 3 CORRELATION TIME USING 1D T1 AND T2 EXPERIMENTS. A TOTAL OF 100 REMARK 3 STRUCTURES WERE CALCULATED AND 20 BEST CONFORMERS WERE THEN REMARK 3 REFINED IN A SHELL OF WATER USING CNS. FINAL STRUCTURE QUALITY REMARK 3 FACTORS WERE DETERMINED USING THE PSVS SERVER: ORDERED RESIDUES REMARK 3 ARE DEFINED AS (7-18 AND 24-61). (A) RMSD (ORDERED RESIDUES) ALL REMARK 3 BACKBONE ATOMS: 0.6A; ALL HEAVY ATOMS: 0.9A. (B) RAMACHANDRAN REMARK 3 STATISTICS FOR ALL ORDERED RESIDUES: MOST FAVOURED REGION: 87.2%; REMARK 3 ADDITIONALLY ALLOWED REGION: 12.4%; GENEROUSLY ALLOWED REGION: REMARK 3 0.3% AND DISALLOWED REGION: 0.0%. (C) PROCHECK SCORES FOR ALL REMARK 3 ORDERED RESIDUES (RAW/Z) PHI/PSI -0.81/-2.87; ALL DIHEDRAL REMARK 3 ANGLES: -0.45/-2.66. (D) MOLPROBITY CLASH SCORE (RAW/Z): 13.47/- REMARK 3 0.79. (E) RPF SCORES FOR THE GOODNESS OF FIT TO NOESY DATA:- REMARK 3 RECALL: 0.888; PRECISION: 0.968; F-MEASURE: 0.926; DP SCORE: REMARK 3 0.821 REMARK 4 REMARK 4 2M9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000103390. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50MM K-GLUTAMATE, 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 MLV IN CTD, 90% H2O/10% D2O; 0.5 REMARK 210 MM [U-10% 13C; U-100% 15N] MLV REMARK 210 IN CTD, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 13C-EDITED_NOESY; 3D REMARK 210 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE 2.2.1, CYANA 2.1, REMARK 210 CNS 2.0.6, SPARKY 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 6 89.04 -66.75 REMARK 500 1 THR A 21 85.43 -66.34 REMARK 500 1 PRO A 39 106.29 -41.78 REMARK 500 1 ALA A 49 -59.02 -152.44 REMARK 500 1 PRO A 65 41.74 -80.70 REMARK 500 1 SER A 66 -68.83 -100.34 REMARK 500 1 ARG A 72 38.79 -87.30 REMARK 500 1 ARG A 75 89.88 -69.08 REMARK 500 1 ASN A 78 -58.14 -155.33 REMARK 500 1 GLU A 87 89.99 64.44 REMARK 500 2 ALA A 49 -56.81 -150.34 REMARK 500 2 SER A 67 -61.38 -148.27 REMARK 500 2 LEU A 69 -76.64 -80.73 REMARK 500 2 THR A 70 112.90 -169.33 REMARK 500 2 TRP A 71 -60.55 -141.98 REMARK 500 2 ARG A 72 81.97 62.48 REMARK 500 2 ASN A 78 118.07 65.23 REMARK 500 2 LYS A 81 116.89 -167.21 REMARK 500 2 ARG A 83 88.56 -155.97 REMARK 500 3 GLN A 20 -74.80 61.36 REMARK 500 3 ALA A 49 -55.61 -149.22 REMARK 500 3 ALA A 58 106.85 -58.48 REMARK 500 3 SER A 66 -77.56 -159.88 REMARK 500 3 THR A 70 -54.49 -152.09 REMARK 500 3 SER A 76 -94.75 -144.91 REMARK 500 3 ASN A 78 92.97 70.55 REMARK 500 4 HIS A 4 -31.03 77.06 REMARK 500 4 ASP A 12 102.40 -57.75 REMARK 500 4 PRO A 39 109.72 -40.85 REMARK 500 4 ALA A 49 -57.53 -151.04 REMARK 500 4 ALA A 59 114.94 -166.05 REMARK 500 4 PRO A 65 90.72 -67.17 REMARK 500 4 ARG A 72 -79.70 -139.57 REMARK 500 4 ASN A 78 71.90 57.06 REMARK 500 4 LEU A 80 99.74 -63.16 REMARK 500 4 ARG A 86 -83.70 -136.75 REMARK 500 5 ASP A 12 106.30 -56.02 REMARK 500 5 PRO A 39 107.85 -49.12 REMARK 500 5 ALA A 49 -59.59 -150.19 REMARK 500 5 ARG A 72 45.34 -93.84 REMARK 500 5 GLN A 77 -45.87 -153.92 REMARK 500 6 HIS A 2 69.69 -115.39 REMARK 500 6 HIS A 3 94.55 -166.87 REMARK 500 6 ALA A 49 -57.22 -150.75 REMARK 500 6 PRO A 65 30.97 -82.24 REMARK 500 6 ARG A 68 87.46 73.84 REMARK 500 6 LEU A 69 93.18 -67.70 REMARK 500 6 ARG A 72 92.05 -67.06 REMARK 500 6 SER A 76 -66.10 -174.00 REMARK 500 6 GLN A 77 -58.50 -147.30 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19299 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-OR41A RELATED DB: TARGETTRACK DBREF 2M9U A 10 89 UNP P03355 POL_MLVMS 1659 1738 SEQADV 2M9U HIS A 1 UNP P03355 EXPRESSION TAG SEQADV 2M9U HIS A 2 UNP P03355 EXPRESSION TAG SEQADV 2M9U HIS A 3 UNP P03355 EXPRESSION TAG SEQADV 2M9U HIS A 4 UNP P03355 EXPRESSION TAG SEQADV 2M9U HIS A 5 UNP P03355 EXPRESSION TAG SEQADV 2M9U HIS A 6 UNP P03355 EXPRESSION TAG SEQADV 2M9U SER A 7 UNP P03355 EXPRESSION TAG SEQADV 2M9U HIS A 8 UNP P03355 EXPRESSION TAG SEQADV 2M9U MET A 9 UNP P03355 EXPRESSION TAG SEQRES 1 A 89 HIS HIS HIS HIS HIS HIS SER HIS MET VAL GLY ASP THR SEQRES 2 A 89 VAL TRP VAL ARG ARG HIS GLN THR LYS ASN LEU GLU PRO SEQRES 3 A 89 ARG TRP LYS GLY PRO TYR THR VAL LEU LEU THR THR PRO SEQRES 4 A 89 THR ALA LEU LYS VAL ASP GLY ILE ALA ALA TRP ILE HIS SEQRES 5 A 89 ALA ALA HIS VAL LYS ALA ALA ASP PRO GLY GLY GLY PRO SEQRES 6 A 89 SER SER ARG LEU THR TRP ARG VAL GLN ARG SER GLN ASN SEQRES 7 A 89 PRO LEU LYS ILE ARG LEU THR ARG GLU ALA PRO SHEET 1 A 5 ILE A 51 HIS A 52 0 SHEET 2 A 5 ALA A 41 VAL A 44 -1 N LEU A 42 O ILE A 51 SHEET 3 A 5 ARG A 27 THR A 38 -1 N LEU A 36 O LYS A 43 SHEET 4 A 5 ASP A 12 ARG A 18 -1 N VAL A 14 O TYR A 32 SHEET 5 A 5 VAL A 56 ALA A 58 -1 O LYS A 57 N TRP A 15 CISPEP 1 GLY A 30 PRO A 31 1 -2.00 CISPEP 2 GLY A 30 PRO A 31 2 -6.76 CISPEP 3 GLY A 30 PRO A 31 3 1.27 CISPEP 4 GLY A 30 PRO A 31 4 -3.06 CISPEP 5 GLY A 30 PRO A 31 5 0.51 CISPEP 6 GLY A 30 PRO A 31 6 0.77 CISPEP 7 GLY A 30 PRO A 31 7 -5.24 CISPEP 8 GLY A 30 PRO A 31 8 -5.35 CISPEP 9 GLY A 30 PRO A 31 9 4.10 CISPEP 10 GLY A 30 PRO A 31 10 -9.79 CISPEP 11 GLY A 30 PRO A 31 11 -1.44 CISPEP 12 GLY A 30 PRO A 31 12 -4.11 CISPEP 13 GLY A 30 PRO A 31 13 -4.71 CISPEP 14 GLY A 30 PRO A 31 14 4.49 CISPEP 15 GLY A 30 PRO A 31 15 -2.58 CISPEP 16 GLY A 30 PRO A 31 16 -2.51 CISPEP 17 GLY A 30 PRO A 31 17 -2.36 CISPEP 18 GLY A 30 PRO A 31 18 -9.17 CISPEP 19 GLY A 30 PRO A 31 19 -4.73 CISPEP 20 GLY A 30 PRO A 31 20 -1.85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1