HEADER PROTEIN BINDING 21-JUN-13 2M9V TITLE STRUCTURE OF SACCHAROMYCES CEREVISIAE EST3 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERE REPLICATION PROTEIN EST3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 13-181; COMPND 5 SYNONYM: EVER SHORTER TELOMERES PROTEIN 3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: EST3, YIL009C-A; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.RAO,G.S.ARMSTRONG,D.S.WUTTKE REVDAT 4 14-JUN-23 2M9V 1 REMARK SEQADV REVDAT 3 22-JAN-14 2M9V 1 JRNL REVDAT 2 15-JAN-14 2M9V 1 JRNL REVDAT 1 18-DEC-13 2M9V 0 JRNL AUTH T.RAO,J.W.LUBIN,G.S.ARMSTRONG,T.M.TUCEY,V.LUNDBLAD, JRNL AUTH 2 D.S.WUTTKE JRNL TITL STRUCTURE OF EST3 REVEALS A BIMODAL SURFACE WITH JRNL TITL 2 DIFFERENTIAL ROLES IN TELOMERE REPLICATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 214 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24344315 JRNL DOI 10.1073/PNAS.1316453111 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 3.1, ROSETTA 3.4 REMARK 3 AUTHORS : VARIAN (VNMRJ), DAVID BAKER (ROSETTA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000103391. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM BIS TRIS PROPANE, 150 MM REMARK 210 MOPS, 50 MM SODIUM SULFATE, 100 REMARK 210 MM ARGININE, 100 MM GLUTAMATE, REMARK 210 100 MM NDSB, 2 MM DTT, 7 % D2O, REMARK 210 0.15 MM TSP, 93% H2O/7% D2O; 50 REMARK 210 MM BIS TRIS PROPANE, 150 MM MOPS, REMARK 210 50 MM SODIUM SULFATE, 100 MM REMARK 210 ARGININE, 100 MM GLUTAMATE, 100 REMARK 210 MM NDSB, 2 MM DTT, 10 % D2O, 9.6 REMARK 210 MG/ML PF1 PHAGE, 90% H2O/10% D2O; REMARK 210 50 MM BIS TRIS PROPANE, 150 MM REMARK 210 MOPS, 50 MM SODIUM SULFATE, 100 REMARK 210 MM ARGININE, 100 MM GLUTAMATE, REMARK 210 100 MM NDSB, 2 MM DTT, 10 % D2O, REMARK 210 90% H2O/10% D2O; 50 MM BIS TRIS REMARK 210 PROPANE, 150 MM MOPS, 50 MM REMARK 210 SODIUM SULFATE, 100 MM ARGININE, REMARK 210 100 MM GLUTAMATE, 100 MM NDSB, 2 REMARK 210 MM DTT, 7 % D2O, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC TROSY; 3D HNCA REMARK 210 TROSY; 3D HN(CA)CB TROSY; 3D REMARK 210 HN(CO)CA TROSY; 3D HN(COCA)CB REMARK 210 TROSY; 3D HNCO TROSY; 3D 1H-15N REMARK 210 NOESY; 2D 1H-13C HMQC; 3D REMARK 210 HMCMCBCA; 3D HMCMCGCBCA; 3D REMARK 210 METHYL 1H-1H 13C HMQC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS; DD2 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.1.5, NMRPIPE REMARK 210 2011, CYANA 2.1, ROSETTA 3.4, CS- REMARK 210 ROSETTA_TOOLBOX 1.3, X-PLOR NIH REMARK 210 2.29 REMARK 210 METHOD USED : MOLECULAR FRAGMENT REPLACEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS CALCULATED BY A COMBINATION OF NOE AND REMARK 210 RESIDUAL DIPOLAR COUPLING REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 8 PRO A 37 CD PRO A 37 N 0.092 REMARK 500 20 PRO A 43 CD PRO A 43 N 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 21 -28.99 -150.32 REMARK 500 1 LYS A 71 147.22 -179.97 REMARK 500 1 TYR A 73 -61.75 -108.00 REMARK 500 1 ASP A 86 -150.04 -138.91 REMARK 500 1 SER A 88 -108.82 -106.84 REMARK 500 1 HIS A 138 -63.05 -103.27 REMARK 500 2 GLN A 34 109.99 -56.74 REMARK 500 2 LYS A 71 141.40 -170.06 REMARK 500 2 ASP A 86 -141.80 -112.34 REMARK 500 2 SER A 88 -64.43 -139.13 REMARK 500 2 ILE A 165 -50.67 -131.58 REMARK 500 3 ASP A 77 89.24 -58.44 REMARK 500 3 ASP A 86 -149.47 -117.98 REMARK 500 3 SER A 88 -61.65 -147.41 REMARK 500 3 ILE A 146 -29.96 -144.29 REMARK 500 3 PHE A 176 -60.22 -125.38 REMARK 500 4 LYS A 71 147.43 -173.39 REMARK 500 4 ASP A 86 -159.86 -116.79 REMARK 500 4 SER A 88 -67.22 -121.61 REMARK 500 4 ASP A 124 73.86 44.32 REMARK 500 4 PHE A 163 -67.86 -91.00 REMARK 500 5 TRP A 21 -20.87 -141.04 REMARK 500 5 TYR A 35 62.13 63.83 REMARK 500 5 SER A 38 -163.46 -129.89 REMARK 500 5 LYS A 71 145.91 -176.17 REMARK 500 5 ASP A 77 105.93 -53.13 REMARK 500 5 LYS A 79 86.33 -165.95 REMARK 500 5 ASP A 86 -141.69 -103.77 REMARK 500 5 SER A 88 -68.52 -143.45 REMARK 500 5 SER A 113 97.40 -57.79 REMARK 500 5 ASP A 124 70.58 51.29 REMARK 500 5 ILE A 146 30.99 -169.35 REMARK 500 5 ASP A 164 40.14 -96.66 REMARK 500 5 PRO A 175 109.94 -53.46 REMARK 500 6 LEU A 18 77.33 -103.31 REMARK 500 6 TRP A 21 -24.96 -140.24 REMARK 500 6 LYS A 71 139.97 -171.43 REMARK 500 6 ASP A 77 95.84 -57.76 REMARK 500 6 ASP A 86 -149.98 -83.24 REMARK 500 6 SER A 88 -70.03 -137.10 REMARK 500 6 SER A 113 95.81 -56.10 REMARK 500 6 ASP A 124 71.14 48.85 REMARK 500 7 TRP A 21 -23.93 -141.04 REMARK 500 7 GLU A 31 30.64 -99.96 REMARK 500 7 SER A 38 -169.98 -107.82 REMARK 500 7 LYS A 71 140.34 -175.27 REMARK 500 7 ASN A 74 -171.34 -179.61 REMARK 500 7 ASP A 86 -149.57 -132.79 REMARK 500 7 SER A 88 -109.29 -98.91 REMARK 500 7 HIS A 138 -65.17 -102.56 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19311 RELATED DB: BMRB DBREF 2M9V A 13 181 UNP Q03096 EST3_YEAST 13 181 SEQADV 2M9V SER A 12 UNP Q03096 EXPRESSION TAG SEQADV 2M9V SER A 142 UNP Q03096 CYS 142 ENGINEERED MUTATION SEQRES 1 A 170 SER THR ASP SER VAL PHE LEU GLN PRO TRP ILE LYS ALA SEQRES 2 A 170 LEU ILE GLU ASP ASN SER GLU HIS ASP GLN TYR HIS PRO SEQRES 3 A 170 SER GLY HIS VAL ILE PRO SER LEU THR LYS GLN ASP LEU SEQRES 4 A 170 ALA LEU PRO HIS MET SER PRO THR ILE LEU THR ASN PRO SEQRES 5 A 170 CYS HIS PHE ALA LYS ILE THR LYS PHE TYR ASN VAL CYS SEQRES 6 A 170 ASP TYR LYS VAL TYR ALA SER ILE ARG ASP SER SER HIS SEQRES 7 A 170 GLN ILE LEU VAL GLU PHE SER GLN GLU CYS VAL SER ASN SEQRES 8 A 170 PHE GLU ARG THR HIS ASN CYS ARG ILE THR SER GLU THR SEQRES 9 A 170 THR ASN CYS LEU MET ILE ILE GLY ASP ALA ASP LEU VAL SEQRES 10 A 170 TYR VAL THR ASN SER ARG ALA MET SER HIS PHE LYS ILE SEQRES 11 A 170 SER LEU SER ASN ILE SER SER LYS GLU ILE VAL PRO VAL SEQRES 12 A 170 LEU ASN VAL ASN GLN ALA THR ILE PHE ASP ILE ASP GLN SEQRES 13 A 170 VAL GLY SER LEU SER THR PHE PRO PHE VAL TYR LYS TYR SEQRES 14 A 170 LEU HELIX 1 1 ASP A 14 LEU A 18 5 5 HELIX 2 2 TRP A 21 ASN A 29 1 9 HELIX 3 3 THR A 46 LEU A 52 1 7 HELIX 4 4 PRO A 53 MET A 55 5 3 HELIX 5 5 SER A 56 THR A 61 1 6 HELIX 6 6 ASN A 62 CYS A 64 5 3 HELIX 7 7 SER A 96 ASN A 108 1 13 HELIX 8 8 ASN A 132 HIS A 138 1 7 HELIX 9 9 SER A 142 ILE A 146 5 5 SHEET 1 A 7 ASP A 126 THR A 131 0 SHEET 2 A 7 ILE A 151 VAL A 157 -1 O ASN A 156 N ASP A 126 SHEET 3 A 7 GLN A 90 PHE A 95 1 N GLU A 94 O LEU A 155 SHEET 4 A 7 LYS A 79 ARG A 85 -1 N ILE A 84 O ILE A 91 SHEET 5 A 7 PHE A 66 CYS A 76 -1 N TYR A 73 O TYR A 81 SHEET 6 A 7 LEU A 119 GLY A 123 -1 O MET A 120 N ALA A 67 SHEET 7 A 7 GLN A 159 PHE A 163 -1 O PHE A 163 N LEU A 119 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1