HEADER REPLICATION 26-JUN-13 2MA3 TITLE NMR SOLUTION STRUCTURE OF THE C-TERMINUS OF THE MINICHROMOSOME TITLE 2 MAINTENANCE PROTEIN MCM FROM METHANOTHERMOBACTER THERMAUTOTROPHICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPLICATION INITIATOR (CDC21/CDC54); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 583-666; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_COMMON: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 4 ORGANISM_TAXID: 145262; SOURCE 5 STRAIN: ATCC 29096; SOURCE 6 GENE: MTH_1770; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RILP; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PPROEX HTA KEYWDS MINICHROMOSOME MAINTENANCE PROTEIN, MCM, WINGED HELIX, REPLICATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.WIEDEMANN,O.OHLENSCHLAGER,B.MEDAGLI,S.ONESTI,M.GORLACH REVDAT 3 14-JUN-23 2MA3 1 REMARK SEQADV REVDAT 2 20-MAY-15 2MA3 1 JRNL REVDAT 1 31-DEC-14 2MA3 0 JRNL AUTH C.WIEDEMANN,A.SZAMBOWSKA,S.HAFNER,O.OHLENSCHLAGER,K.H.GUHRS, JRNL AUTH 2 M.GORLACH JRNL TITL STRUCTURE AND REGULATORY ROLE OF THE C-TERMINAL WINGED HELIX JRNL TITL 2 DOMAIN OF THE ARCHAEAL MINICHROMOSOME MAINTENANCE COMPLEX. JRNL REF NUCLEIC ACIDS RES. V. 43 2958 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25712103 JRNL DOI 10.1093/NAR/GKV120 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000103399. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 160 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] C-TERMINUS REMARK 210 OF THE MINICHROMOSOME REMARK 210 MAINTENANCE PROTEIN MCM OF REMARK 210 METHANOTHERMOBACTER THERMAUTOTROP REMARK 210 HICUS, 10 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 90 % H2O, REMARK 210 10 % D2O, 90% H2O/10% D2O; 1 MM REMARK 210 [U-13C; U-15N] C-TERMINUS OF THE REMARK 210 MINICHROMOSOME MAINTENANCE REMARK 210 PROTEIN MCM OF REMARK 210 METHANOTHERMOBACTER THERMAUTOTROP REMARK 210 HICUS, 10 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 100 % REMARK 210 D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D HNCO; 3D REMARK 210 HCACO; 3D HNHA; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CYANA, CCPNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 624 OE2 GLU A 657 1.37 REMARK 500 OE1 GLU A 583 HG1 THR A 584 1.42 REMARK 500 O LYS A 598 HG SER A 599 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 601 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 1 ARG A 634 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 1 ARG A 634 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 ARG A 605 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 3 ARG A 605 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 5 ARG A 634 CD - NE - CZ ANGL. DEV. = 9.1 DEGREES REMARK 500 6 ARG A 601 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 605 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 9 ARG A 605 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 11 ARG A 647 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 12 ARG A 595 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 16 ARG A 601 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 590 -105.96 -90.95 REMARK 500 1 VAL A 592 32.02 -75.25 REMARK 500 2 ALA A 580 26.61 46.60 REMARK 500 2 MET A 581 -45.35 64.04 REMARK 500 2 ASP A 590 -59.19 -22.40 REMARK 500 2 LYS A 591 -7.55 -49.70 REMARK 500 2 ARG A 595 105.89 -51.50 REMARK 500 3 ILE A 589 -41.95 -139.82 REMARK 500 3 ASN A 636 86.09 27.91 REMARK 500 4 ALA A 622 85.55 26.12 REMARK 500 4 ARG A 660 14.29 -56.13 REMARK 500 5 THR A 584 -179.56 -69.59 REMARK 500 6 LYS A 591 41.10 77.79 REMARK 500 6 ARG A 621 83.38 -154.19 REMARK 500 6 ARG A 660 27.77 -60.34 REMARK 500 7 PRO A 597 -163.26 -73.29 REMARK 500 7 SER A 599 -70.61 -120.00 REMARK 500 7 ARG A 660 15.30 -56.09 REMARK 500 8 ASP A 590 10.26 -62.15 REMARK 500 8 LYS A 591 11.92 59.88 REMARK 500 8 ARG A 601 -162.44 -160.15 REMARK 500 8 ARG A 621 81.09 -157.46 REMARK 500 8 ARG A 660 4.90 -53.68 REMARK 500 9 ILE A 589 -18.44 60.96 REMARK 500 9 PRO A 597 35.33 -72.07 REMARK 500 9 ARG A 660 15.75 -65.85 REMARK 500 10 ALA A 580 -179.87 -66.18 REMARK 500 10 ASN A 636 46.84 38.23 REMARK 500 10 ARG A 660 14.94 -53.78 REMARK 500 11 ASP A 590 14.39 57.95 REMARK 500 11 VAL A 592 37.23 -64.39 REMARK 500 11 GLU A 593 39.98 -77.96 REMARK 500 11 PRO A 597 43.47 -74.06 REMARK 500 11 ASN A 636 19.95 58.84 REMARK 500 12 ALA A 580 -0.65 58.17 REMARK 500 12 GLU A 583 96.59 -35.45 REMARK 500 12 ILE A 589 -157.35 -143.29 REMARK 500 12 ASP A 590 -27.69 73.36 REMARK 500 12 LYS A 591 0.92 -66.98 REMARK 500 12 SER A 599 48.53 -73.18 REMARK 500 12 ARG A 660 107.79 -56.31 REMARK 500 14 ALA A 580 -140.69 -144.90 REMARK 500 14 MET A 581 10.18 54.40 REMARK 500 14 LYS A 586 -14.96 -144.29 REMARK 500 14 LYS A 591 -11.46 69.79 REMARK 500 14 GLU A 593 -148.14 -153.71 REMARK 500 14 THR A 596 152.43 138.28 REMARK 500 14 GLU A 615 -71.76 -54.38 REMARK 500 14 ARG A 621 -6.94 -141.13 REMARK 500 14 ALA A 622 81.27 22.57 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 579 ALA A 580 1 142.78 REMARK 500 GLY A 579 ALA A 580 10 149.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 621 0.09 SIDE CHAIN REMARK 500 3 ARG A 634 0.17 SIDE CHAIN REMARK 500 4 ARG A 605 0.08 SIDE CHAIN REMARK 500 5 ARG A 605 0.15 SIDE CHAIN REMARK 500 6 ARG A 634 0.09 SIDE CHAIN REMARK 500 7 ARG A 605 0.17 SIDE CHAIN REMARK 500 7 ARG A 634 0.14 SIDE CHAIN REMARK 500 9 ARG A 605 0.23 SIDE CHAIN REMARK 500 11 ARG A 634 0.17 SIDE CHAIN REMARK 500 12 ARG A 595 0.08 SIDE CHAIN REMARK 500 12 ARG A 601 0.13 SIDE CHAIN REMARK 500 13 ARG A 601 0.12 SIDE CHAIN REMARK 500 14 ARG A 595 0.08 SIDE CHAIN REMARK 500 15 ARG A 621 0.09 SIDE CHAIN REMARK 500 17 ARG A 634 0.17 SIDE CHAIN REMARK 500 18 TYR A 662 0.07 SIDE CHAIN REMARK 500 19 ARG A 634 0.17 SIDE CHAIN REMARK 500 20 ARG A 634 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19187 RELATED DB: BMRB DBREF 2MA3 A 583 666 UNP O27798 O27798_METTH 583 666 SEQADV 2MA3 GLY A 579 UNP O27798 EXPRESSION TAG SEQADV 2MA3 ALA A 580 UNP O27798 EXPRESSION TAG SEQADV 2MA3 MET A 581 UNP O27798 EXPRESSION TAG SEQADV 2MA3 GLY A 582 UNP O27798 EXPRESSION TAG SEQRES 1 A 88 GLY ALA MET GLY GLU THR GLY LYS ILE ASP ILE ASP LYS SEQRES 2 A 88 VAL GLU GLY ARG THR PRO LYS SER GLU ARG ASP LYS PHE SEQRES 3 A 88 ARG LEU LEU LEU GLU LEU ILE LYS GLU TYR GLU ASP ASP SEQRES 4 A 88 TYR GLY GLY ARG ALA PRO THR ASN ILE LEU ILE THR GLU SEQRES 5 A 88 MET MET ASP ARG TYR ASN VAL SER GLU GLU LYS VAL GLU SEQRES 6 A 88 GLU LEU ILE ARG ILE LEU LYS ASP LYS GLY ALA ILE PHE SEQRES 7 A 88 GLU PRO ALA ARG GLY TYR LEU LYS ILE VAL HELIX 1 1 ASP A 602 GLY A 619 1 18 HELIX 2 2 THR A 624 TYR A 635 1 12 HELIX 3 3 SER A 638 LYS A 652 1 15 SHEET 1 A 3 ALA A 622 PRO A 623 0 SHEET 2 A 3 TYR A 662 ILE A 665 -1 O LEU A 663 N ALA A 622 SHEET 3 A 3 ILE A 655 ALA A 659 -1 N PHE A 656 O LYS A 664 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1