HEADER MEMBRANE PROTEIN 27-JUN-13 2MA4 TITLE SOLUTION NMR STRUCTURE OF YAHO PROTEIN FROM SALMONELLA TYPHIMURIUM, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET STR106 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-91; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2; SOURCE 6 GENE: STM0366, STM4576, YAHO; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DUF1471, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,Q.ZHANG,G.LIU,H.WANG,C.NWOSU,K.CUNNINGHAM,L.MA,R.XIAO, AUTHOR 2 J.LIU,M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE, AUTHOR 3 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2MA4 1 REMARK SEQADV REVDAT 2 30-JUL-14 2MA4 1 JRNL REVDAT 1 28-AUG-13 2MA4 0 JRNL AUTH A.ELETSKY,K.MICHALSKA,S.HOULISTON,Q.ZHANG,M.D.DAILY,X.XU, JRNL AUTH 2 H.CUI,A.YEE,A.LEMAK,B.WU,M.GARCIA,M.C.BURNET,K.M.MEYER, JRNL AUTH 3 U.K.ARYAL,O.SANCHEZ,C.ANSONG,R.XIAO,T.B.ACTON,J.N.ADKINS, JRNL AUTH 4 G.T.MONTELIONE,A.JOACHIMIAK,C.H.ARROWSMITH,A.SAVCHENKO, JRNL AUTH 5 T.SZYPERSKI,J.R.CORT JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF DUF1471 JRNL TITL 2 DOMAINS OF SALMONELLA PROTEINS SRFN, YDGH/SSSB, AND YAHO. JRNL REF PLOS ONE V. 9 01787 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25010333 JRNL DOI 10.1371/JOURNAL.PONE.0101787 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3, CYANA 3.0, AS-DP 1.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE (AS-DP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 BY RUNNING CYANA AND ASDP IN PARALLEL USING NOE-BASED REMARK 3 CONSTRAINTS AND PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM REMARK 3 TALOS+. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED IN REMARK 3 ITERATIVE REFINEMENT WITH CYANA. THE 20 CONFORMERS OUT OF 100 REMARK 3 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY REMARK 3 SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS REMARK 3 WITH PARAM19 FORCE FIELD REMARK 4 REMARK 4 2MA4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000103400. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 STR106, 0.02 % NAN3, 10 MM DTT, REMARK 210 5 MM CALCIUM CHLORIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 50 UM DSS, 90% H2O/10% REMARK 210 D2O; 1 MM [5% 13C; U-100% 15N] REMARK 210 STR106, 0.02 % NAN3, 10 MM DTT, REMARK 210 5 MM CALCIUM CHLORIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 50 UM DSS, 90% H2O/10% REMARK 210 D2O; 0.3 MM [U-100% 13C; U-100% REMARK 210 15N] STR106, 0.02 % NAN3, 10 MM REMARK 210 DTT, 5 MM CALCIUM CHLORIDE, 100 REMARK 210 MM SODIUM CHLORIDE, 20 MM REMARK 210 AMMONIUM ACETATE, 50 UM DSS, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; (4,3)D GFT REMARK 210 CABCA(CO)NHN; (4,3)D GFT REMARK 210 HNHNCABCA; (4,3)D GFT HABCAB(CO) REMARK 210 NHN; 3D 1H-15N,13C NOESY; (4,3)D REMARK 210 GFT HCCH-COSY ALIPHATIC; 3D (H) REMARK 210 CCH-COSY AROMATIC; 3D (H)CCH- REMARK 210 TOCSY ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC METHYL REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, AS-DP 1.0, XEASY REMARK 210 1.3.13, VNMRJ 2.2D, TALOS+, PSVS REMARK 210 1.4, NMRPIPE 2.3, PROSA 6.4, REMARK 210 DYANA 1.5, UBNMR 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 49 -85.58 -74.51 REMARK 500 1 LEU A 72 86.57 -63.15 REMARK 500 1 SER A 74 -37.53 175.62 REMARK 500 1 HIS A 95 -20.92 73.26 REMARK 500 1 HIS A 96 87.20 -67.70 REMARK 500 1 HIS A 98 77.90 58.37 REMARK 500 2 THR A 77 -29.08 178.70 REMARK 500 2 LYS A 80 93.14 -163.91 REMARK 500 2 LEU A 92 177.39 68.47 REMARK 500 2 HIS A 96 79.17 -43.55 REMARK 500 2 HIS A 97 109.83 -179.56 REMARK 500 3 LEU A 72 90.89 -63.55 REMARK 500 3 GLU A 78 -12.94 76.44 REMARK 500 3 LEU A 92 83.40 57.35 REMARK 500 3 HIS A 94 -69.69 176.14 REMARK 500 3 HIS A 95 94.93 179.50 REMARK 500 3 HIS A 96 -60.65 -151.60 REMARK 500 4 GLU A 78 -68.06 69.32 REMARK 500 4 ASN A 79 97.13 -49.66 REMARK 500 4 HIS A 95 45.82 -87.27 REMARK 500 4 HIS A 97 -30.50 -168.67 REMARK 500 5 THR A 46 92.73 -67.42 REMARK 500 5 LEU A 72 97.29 -63.33 REMARK 500 5 GLN A 76 96.96 73.17 REMARK 500 5 GLU A 78 -55.48 76.73 REMARK 500 5 LEU A 92 112.02 74.28 REMARK 500 5 HIS A 94 48.79 -109.58 REMARK 500 5 HIS A 95 106.80 67.65 REMARK 500 6 THR A 73 -57.76 -135.05 REMARK 500 6 GLN A 76 -35.23 -157.36 REMARK 500 6 GLU A 78 83.73 63.04 REMARK 500 6 ASN A 79 -47.45 -167.18 REMARK 500 6 LYS A 80 81.09 -155.34 REMARK 500 6 HIS A 82 29.25 -159.93 REMARK 500 6 HIS A 97 77.52 -155.13 REMARK 500 6 HIS A 98 -60.27 -178.40 REMARK 500 7 LEU A 72 95.34 -66.80 REMARK 500 7 GLU A 78 -41.13 81.04 REMARK 500 7 LYS A 80 84.12 -150.18 REMARK 500 7 GLU A 93 -172.34 68.22 REMARK 500 7 HIS A 95 81.08 57.39 REMARK 500 8 MET A 49 -85.49 60.83 REMARK 500 8 LEU A 72 93.13 -64.45 REMARK 500 8 ASN A 79 -49.72 -172.83 REMARK 500 8 HIS A 94 43.64 -140.90 REMARK 500 9 LEU A 72 79.90 -69.59 REMARK 500 9 GLU A 78 -64.68 76.34 REMARK 500 9 HIS A 82 -49.65 -150.16 REMARK 500 9 GLU A 93 -71.57 -65.44 REMARK 500 9 HIS A 97 78.67 52.24 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NESG-STR106 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 19327 RELATED DB: BMRB DBREF 2MA4 A 22 91 UNP Q7CR49 Q7CR49_SALTY 22 91 SEQADV 2MA4 LEU A 92 UNP Q7CR49 EXPRESSION TAG SEQADV 2MA4 GLU A 93 UNP Q7CR49 EXPRESSION TAG SEQADV 2MA4 HIS A 94 UNP Q7CR49 EXPRESSION TAG SEQADV 2MA4 HIS A 95 UNP Q7CR49 EXPRESSION TAG SEQADV 2MA4 HIS A 96 UNP Q7CR49 EXPRESSION TAG SEQADV 2MA4 HIS A 97 UNP Q7CR49 EXPRESSION TAG SEQADV 2MA4 HIS A 98 UNP Q7CR49 EXPRESSION TAG SEQADV 2MA4 HIS A 99 UNP Q7CR49 EXPRESSION TAG SEQRES 1 A 78 ALA GLU ILE MET LYS LYS THR ASP PHE ASP LYS VAL ALA SEQRES 2 A 78 SER GLU TYR THR LYS ILE GLY THR ILE SER THR THR GLY SEQRES 3 A 78 GLU MET SER PRO LEU ASP ALA ARG GLU ASP LEU ILE LYS SEQRES 4 A 78 LYS ALA ASP GLU LYS GLY ALA ASP VAL VAL VAL LEU THR SEQRES 5 A 78 SER GLY GLN THR GLU ASN LYS ILE HIS GLY THR ALA ASP SEQRES 6 A 78 ILE TYR LYS LYS LYS LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 LYS A 27 ASP A 31 1 5 HELIX 2 2 LYS A 32 SER A 35 5 4 HELIX 3 3 SER A 50 LYS A 65 1 16 SHEET 1 A 4 GLU A 23 LYS A 26 0 SHEET 2 A 4 VAL A 69 LEU A 72 1 O VAL A 70 N GLU A 23 SHEET 3 A 4 THR A 84 LYS A 90 -1 O TYR A 88 N VAL A 69 SHEET 4 A 4 TYR A 37 SER A 44 -1 N ILE A 43 O ALA A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1