HEADER SIGNALING PROTEIN 02-AUG-13 2MBK TITLE THE CLIP-SEGMENT OF THE VON WILLEBRAND DOMAIN 1 OF THE BMP MODULATOR TITLE 2 PROTEIN CROSSVEINLESS 2 IS PREFORMED COMPND MOL_ID: 1; COMPND 2 MOLECULE: CROSSVEINLESS 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-93; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: BMPER, CVL2, ID:IBD5071; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS VON WILLEBRAND TYPE C DOMAIN, BMP MODULATOR, CROSSVEINLESS 2, BMPER, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.D.MUELLER,J.E.FIEBIG,S.E.WEIDAUER,L.QIU,M.BAUER,P.SCHMIEDER, AUTHOR 2 M.BEERBAUM,J.ZHANG,H.OSCHKINAT,W.SEBALD REVDAT 2 14-JUN-23 2MBK 1 REMARK SEQADV REVDAT 1 16-OCT-13 2MBK 0 JRNL AUTH J.E.FIEBIG,S.E.WEIDAUER,L.Y.QIU,M.BAUER,P.SCHMIEDER, JRNL AUTH 2 M.BEERBAUM,J.L.ZHANG,H.OSCHKINAT,W.SEBALD,T.D.MUELLER JRNL TITL THE CLIP-SEGMENT OF THE VON WILLEBRAND DOMAIN 1 OF THE BMP JRNL TITL 2 MODULATOR PROTEIN CROSSVEINLESS 2 IS PREFORMED. JRNL REF MOLECULES V. 18 11658 2013 JRNL REFN ESSN 1420-3049 JRNL PMID 24071977 JRNL DOI 10.3390/MOLECULES181011658 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, X-PLOR NIH 2.29 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103445. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 0.04 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-99% 13C; U-99% 15N] CV2 REMARK 210 VWC1, 20 MM SODIUM PHOSPHATE, 20 REMARK 210 MM SODIUM CHLORIDE, 5 % [U-2H] REMARK 210 D2O, 0.2 % SODIUM AZIDE, 95% H2O/ REMARK 210 5% D2O; 1.5 MM [U-99% 15N] CV2 REMARK 210 VWC1, 20 MM SODIUM PHOSPHATE, 20 REMARK 210 MM SODIUM CHLORIDE, 5 % [U-2H] REMARK 210 D2O, 0.2 % SODIUM AZIDE, 95% H2O/ REMARK 210 5% D2O; 2 MM CV2 VWC1, 20 MM REMARK 210 SODIUM PHOSPHATE, 20 MM SODIUM REMARK 210 CHLORIDE, 5 % [U-2H] D2O, 0.2 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY; 3D 1H-15N NOESY; 3D REMARK 210 1H-15N TOCSY; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D HN(CA)CO; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, AURELIA 3.85, X REMARK 210 -PLOR NIH 2.29 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 30 H GLU A 37 1.55 REMARK 500 H GLY A 13 O CYS A 31 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 14 -91.17 -110.51 REMARK 500 1 VAL A 15 136.61 174.51 REMARK 500 1 PRO A 19 -86.16 -51.63 REMARK 500 1 ILE A 21 -74.21 -93.72 REMARK 500 1 CYS A 31 78.08 -54.63 REMARK 500 1 LEU A 46 -71.59 -119.52 REMARK 500 1 GLU A 48 -38.29 90.59 REMARK 500 1 CYS A 50 150.75 -41.41 REMARK 500 1 LEU A 52 86.35 65.49 REMARK 500 1 LYS A 55 133.69 164.05 REMARK 500 1 CYS A 60 -80.54 -69.57 REMARK 500 1 CYS A 61 165.23 -48.92 REMARK 500 1 LYS A 65 -3.46 133.23 REMARK 500 2 CYS A 9 -166.68 -118.73 REMARK 500 2 ASN A 11 -126.28 -121.41 REMARK 500 2 VAL A 15 108.04 45.15 REMARK 500 2 PRO A 19 -88.44 -48.27 REMARK 500 2 CYS A 31 83.94 -50.08 REMARK 500 2 GLU A 37 91.30 -63.83 REMARK 500 2 LEU A 46 -147.99 -112.36 REMARK 500 2 GLU A 48 -4.49 83.99 REMARK 500 2 ALA A 51 30.57 -154.93 REMARK 500 2 VAL A 53 -34.02 162.21 REMARK 500 2 LYS A 63 -137.42 -105.25 REMARK 500 2 LYS A 65 9.92 120.04 REMARK 500 3 ASN A 11 -131.35 -110.97 REMARK 500 3 GLU A 14 -75.05 -101.87 REMARK 500 3 VAL A 15 107.30 155.66 REMARK 500 3 PRO A 19 -85.12 -52.71 REMARK 500 3 ILE A 21 -74.53 -94.50 REMARK 500 3 CYS A 31 90.12 -55.34 REMARK 500 3 ALA A 44 -173.37 -46.50 REMARK 500 3 PRO A 45 155.64 -31.74 REMARK 500 3 ALA A 47 -158.06 86.36 REMARK 500 3 GLU A 48 15.07 56.59 REMARK 500 3 ASP A 49 33.39 137.98 REMARK 500 3 ALA A 51 15.29 -162.34 REMARK 500 3 LEU A 52 77.80 149.57 REMARK 500 3 VAL A 53 77.08 -39.29 REMARK 500 3 VAL A 54 113.97 95.74 REMARK 500 3 GLN A 56 103.09 47.01 REMARK 500 3 ALA A 59 -82.36 -73.63 REMARK 500 3 CYS A 60 -76.48 -151.71 REMARK 500 3 CYS A 61 -162.56 179.88 REMARK 500 3 GLU A 62 -142.71 -170.27 REMARK 500 3 CYS A 64 125.09 7.30 REMARK 500 3 LYS A 65 48.66 -80.04 REMARK 500 4 CYS A 9 -168.10 -105.58 REMARK 500 4 ASN A 11 -125.15 -115.40 REMARK 500 4 VAL A 15 111.20 48.70 REMARK 500 REMARK 500 THIS ENTRY HAS 173 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19403 RELATED DB: BMRB DBREF 2MBK A 1 66 UNP Q5D734 Q5D734_DANRE 28 93 SEQADV 2MBK GLY A -3 UNP Q5D734 EXPRESSION TAG SEQADV 2MBK SER A -2 UNP Q5D734 EXPRESSION TAG SEQADV 2MBK TRP A -1 UNP Q5D734 EXPRESSION TAG SEQRES 1 A 69 GLY SER TRP LEU ILE THR GLY THR GLU ALA SER CYS GLU SEQRES 2 A 69 ASN GLU GLY GLU VAL LEU HIS ILE PRO ASN ILE THR ASP SEQRES 3 A 69 ASN PRO CYS ILE SER CYS VAL CYS LEU ASN GLN LYS ALA SEQRES 4 A 69 GLU CYS LYS GLN GLU LYS CYS ALA PRO LEU ALA GLU ASP SEQRES 5 A 69 CYS ALA LEU VAL VAL LYS GLN THR GLY ALA CYS CYS GLU SEQRES 6 A 69 LYS CYS LYS GLY HELIX 1 1 ILE A 18 ASP A 23 1 6 SHEET 1 A 2 ILE A 27 SER A 28 0 SHEET 2 A 2 LYS A 39 GLN A 40 -1 O LYS A 39 N SER A 28 SHEET 1 B 2 CYS A 31 LEU A 32 0 SHEET 2 B 2 LYS A 35 ALA A 36 -1 O LYS A 35 N LEU A 32 SSBOND 1 CYS A 9 CYS A 31 1555 1555 2.03 SSBOND 2 CYS A 26 CYS A 60 1555 1555 2.03 SSBOND 3 CYS A 29 CYS A 38 1555 1555 2.02 SSBOND 4 CYS A 43 CYS A 61 1555 1555 2.03 SSBOND 5 CYS A 50 CYS A 64 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1