HEADER DE NOVO PROTEIN 02-AUG-13 2MBL TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED TOP7 FOLD PROTEIN TOP7M13, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR33 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOP7 FOLD PROTEIN TOP7M13; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET29B+ KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,A.L.ZANGHELLINI,K.CHAN,R.XIAO,H.JANJUA,S.KOGAN,M.MAGLAQUI, AUTHOR 2 C.CICCOSANTI,T.B.ACTON,G.KORNHABER,J.K.EVERETT,D.BAKER, AUTHOR 3 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 09-OCT-24 2MBL 1 REMARK REVDAT 2 14-JUN-23 2MBL 1 REMARK REVDAT 1 13-NOV-13 2MBL 0 JRNL AUTH G.LIU,A.L.ZANGHELLINI,K.CHAN,R.XIAO,H.JANJUA,S.KOGAN, JRNL AUTH 2 M.MAGLAQUI,C.CICCOSANTI,T.B.ACTON,G.KORNHABER,J.K.EVERETT, JRNL AUTH 3 D.BAKER,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED TOP7 FOLD PROTEIN JRNL TITL 2 TOP7M13, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) JRNL TITL 3 TARGET OR33 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103446. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.69 MM [U-100% 13C; U-100% 15N] REMARK 210 OR33.017, 90% H2O/10% D2O; 0.69 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 OR33.007, 90% H2O/10% D2O; 0.69 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 OR33.007_RDC, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D HCCH-TOCSY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, PINE, REMARK 210 SPARKY, TALOS+, PALES, REDCAT, REMARK 210 PSVS REMARK 210 METHOD USED : DISTANCE GEOMETRY, MOLECULAR REMARK 210 DYNAMICS, SIMULATED ANNEALING, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 15 -65.31 78.49 REMARK 500 1 ASP A 100 26.09 46.67 REMARK 500 1 GLU A 109 -73.21 74.60 REMARK 500 1 ASP A 112 144.60 -171.82 REMARK 500 2 ASN A 15 -73.10 71.57 REMARK 500 2 HIS A 116 92.84 -65.96 REMARK 500 3 ASP A 92 -81.19 54.80 REMARK 500 3 GLU A 109 -44.33 84.12 REMARK 500 3 GLU A 114 80.39 -69.96 REMARK 500 3 HIS A 115 80.33 -169.85 REMARK 500 4 ASN A 15 -74.02 72.03 REMARK 500 4 ASP A 66 -105.04 -109.29 REMARK 500 4 ALA A 67 -60.25 176.71 REMARK 500 4 GLU A 109 22.45 42.56 REMARK 500 4 VAL A 111 -164.17 -69.15 REMARK 500 4 LEU A 113 98.17 -64.50 REMARK 500 4 HIS A 117 90.93 -67.28 REMARK 500 5 SER A 2 167.96 67.62 REMARK 500 5 HIS A 115 79.26 -67.33 REMARK 500 6 ASN A 15 -46.33 75.89 REMARK 500 6 VAL A 111 -61.95 -142.15 REMARK 500 6 ASP A 112 136.61 177.23 REMARK 500 7 ASN A 15 -1.28 74.30 REMARK 500 7 VAL A 111 -58.14 73.16 REMARK 500 7 ASP A 112 103.62 -54.30 REMARK 500 7 HIS A 117 34.65 -148.84 REMARK 500 8 ASP A 98 75.57 -101.63 REMARK 500 8 HIS A 115 71.69 -158.78 REMARK 500 8 HIS A 117 83.73 -47.98 REMARK 500 8 HIS A 119 54.45 -152.61 REMARK 500 9 CYS A 53 99.30 -69.99 REMARK 500 9 ASP A 100 -52.73 -175.04 REMARK 500 9 GLU A 109 -179.10 -68.30 REMARK 500 9 ASP A 112 -32.74 78.46 REMARK 500 11 ASN A 15 -8.61 77.30 REMARK 500 11 VAL A 28 -71.14 -76.00 REMARK 500 11 SER A 65 32.66 -164.91 REMARK 500 11 ASP A 98 73.93 -152.31 REMARK 500 11 VAL A 111 56.88 -91.75 REMARK 500 11 HIS A 119 -13.52 -143.06 REMARK 500 12 SER A 2 36.59 -99.40 REMARK 500 12 ASN A 15 -72.64 72.08 REMARK 500 12 ASP A 92 32.38 -88.48 REMARK 500 12 LEU A 113 -65.35 -98.51 REMARK 500 12 HIS A 116 34.44 -88.33 REMARK 500 12 HIS A 118 98.11 -61.74 REMARK 500 13 ASP A 98 81.76 -159.40 REMARK 500 13 HIS A 116 94.73 -63.62 REMARK 500 14 HIS A 119 33.33 -146.08 REMARK 500 15 ASN A 15 30.29 70.22 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2MBM RELATED DB: PDB REMARK 900 RELATED ID: 19404 RELATED DB: BMRB REMARK 900 RELATED ID: 19405 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-OR33 RELATED DB: TARGETTRACK DBREF 2MBL A 1 120 PDB 2MBL 2MBL 1 120 SEQRES 1 A 120 MET SER GLY LYS LYS VAL GLU VAL GLN VAL LYS ILE THR SEQRES 2 A 120 CYS ASN GLY LYS THR TYR GLU ARG THR TYR GLN LEU TYR SEQRES 3 A 120 ALA VAL ARG ASP GLU GLU LEU LYS GLU LYS LEU LYS LYS SEQRES 4 A 120 VAL LEU ASN GLU ARG MET ASP PRO ILE LYS LYS LEU GLY SEQRES 5 A 120 CYS LYS ARG VAL ARG ILE SER ILE ARG VAL LYS HIS SER SEQRES 6 A 120 ASP ALA ALA GLU GLU LYS LYS GLU ALA LYS LYS PHE ALA SEQRES 7 A 120 ALA ILE LEU ASN LYS VAL PHE ALA GLU LEU GLY TYR ASN SEQRES 8 A 120 ASP SER ASN VAL THR TRP ASP GLY ASP THR VAL THR VAL SEQRES 9 A 120 GLU GLY GLN LEU GLU GLY VAL ASP LEU GLU HIS HIS HIS SEQRES 10 A 120 HIS HIS HIS HELIX 1 1 ARG A 29 GLY A 52 1 24 HELIX 2 2 ASP A 66 GLY A 89 1 24 SHEET 1 A 5 LYS A 17 ALA A 27 0 SHEET 2 A 5 LYS A 4 CYS A 14 -1 N ILE A 12 O TYR A 19 SHEET 3 A 5 VAL A 56 VAL A 62 -1 O ARG A 61 N GLN A 9 SHEET 4 A 5 THR A 101 GLY A 106 -1 O VAL A 104 N ILE A 58 SHEET 5 A 5 VAL A 95 TRP A 97 -1 N THR A 96 O THR A 103 SSBOND 1 CYS A 14 CYS A 53 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1