HEADER OXIDOREDUCTASE 03-AUG-13 2MBT TITLE NMR STUDY OF PADSBA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-211; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: DSBA, PA5489; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A-PADSBA KEYWDS DSBA, OXIDOREDUCTASE, OXIDISED, STRUCTURAL GENOMICS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.RIMMER,B.MOHANTY,M.J.SCANLON REVDAT 3 14-JUN-23 2MBT 1 REMARK SEQADV REVDAT 2 12-APR-17 2MBT 1 JRNL REVDAT 1 12-NOV-14 2MBT 0 JRNL AUTH B.MOHANTY,K.RIMMER,R.M.MCMAHON,S.J.HEADEY,M.VAZIRANI, JRNL AUTH 2 S.R.SHOULDICE,M.COINCON,S.TAY,C.J.MORTON,J.S.SIMPSON, JRNL AUTH 3 J.L.MARTIN,M.J.SCANLON JRNL TITL FRAGMENT LIBRARY SCREENING IDENTIFIES HITS THAT BIND TO THE JRNL TITL 2 NON-CATALYTIC SURFACE OF PSEUDOMONAS AERUGINOSA DSBA1. JRNL REF PLOS ONE V. 12 73436 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 28346540 JRNL DOI 10.1371/JOURNAL.PONE.0173436 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, OPALP REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103451. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 50 MM SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-100% 13C; U-100% 15N] REMARK 210 PADSBA, 50 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 10 % [U-100% 2H] REMARK 210 D2O, 1 MM DSS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO REMARK 210 METHOD USED : WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 CYS A 37 CA - CB - SG ANGL. DEV. = 9.5 DEGREES REMARK 500 1 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 ARG A 187 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 3 TYR A 35 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 6 CYS A 37 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 11 TYR A 35 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 13 PHE A 67 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 15 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 15 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 16 CYS A 37 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 16 ALA A 189 N - CA - CB ANGL. DEV. = -10.3 DEGREES REMARK 500 20 TYR A 6 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 120.70 70.77 REMARK 500 1 LYS A 10 -85.16 -74.89 REMARK 500 1 CYS A 37 72.34 44.22 REMARK 500 1 VAL A 90 71.91 44.02 REMARK 500 1 VAL A 94 -70.60 -51.61 REMARK 500 1 THR A 151 -54.51 55.00 REMARK 500 1 ASN A 159 26.15 49.34 REMARK 500 2 ASP A 4 135.48 75.74 REMARK 500 2 SER A 16 5.85 -65.00 REMARK 500 2 PRO A 24 -167.49 -70.55 REMARK 500 2 ILE A 47 -30.52 -131.32 REMARK 500 2 ALA A 56 1.02 -65.43 REMARK 500 2 LEU A 66 56.93 -107.62 REMARK 500 2 VAL A 86 82.37 44.13 REMARK 500 2 HIS A 99 -64.78 -103.74 REMARK 500 2 GLU A 101 -58.41 -123.83 REMARK 500 2 HIS A 102 62.53 63.94 REMARK 500 2 LYS A 103 22.51 -77.91 REMARK 500 2 ASN A 159 16.51 56.48 REMARK 500 2 LYS A 161 -33.31 -132.04 REMARK 500 2 SER A 168 -66.27 -90.85 REMARK 500 2 LYS A 191 78.06 53.74 REMARK 500 3 ASP A 5 15.41 -141.90 REMARK 500 3 LYS A 10 -60.25 -94.54 REMARK 500 3 PRO A 38 5.28 -67.17 REMARK 500 3 LEU A 66 60.29 -115.68 REMARK 500 3 VAL A 86 93.80 -58.60 REMARK 500 3 ASP A 89 179.29 66.78 REMARK 500 3 HIS A 91 35.79 -75.51 REMARK 500 3 HIS A 99 -64.11 -102.86 REMARK 500 3 HIS A 102 84.60 57.40 REMARK 500 3 GLN A 149 72.66 52.61 REMARK 500 3 LYS A 161 -30.18 -133.58 REMARK 500 4 ASP A 4 69.17 -108.53 REMARK 500 4 LYS A 10 -85.23 -118.40 REMARK 500 4 CYS A 37 71.93 42.54 REMARK 500 4 PRO A 38 3.42 -67.30 REMARK 500 4 VAL A 86 153.31 -49.79 REMARK 500 4 VAL A 90 167.44 62.13 REMARK 500 4 LYS A 104 36.47 -80.17 REMARK 500 4 LEU A 105 32.82 -64.54 REMARK 500 4 GLU A 109 -71.19 -60.39 REMARK 500 4 ASN A 159 23.53 45.29 REMARK 500 4 LYS A 161 -30.56 -131.27 REMARK 500 4 LYS A 191 31.27 -83.50 REMARK 500 5 ASP A 4 79.40 49.39 REMARK 500 5 ASP A 5 8.33 -69.33 REMARK 500 5 LYS A 10 -85.02 -140.40 REMARK 500 5 ALA A 56 3.40 -67.84 REMARK 500 5 HIS A 74 47.21 -72.14 REMARK 500 REMARK 500 THIS ENTRY HAS 258 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 3 ASP A 4 4 -146.98 REMARK 500 GLY A 36 CYS A 37 4 149.16 REMARK 500 GLY A 3 ASP A 4 9 -135.49 REMARK 500 LYS A 191 LYS A 192 9 142.93 REMARK 500 LYS A 191 LYS A 192 10 147.14 REMARK 500 PHE A 67 GLY A 68 12 142.67 REMARK 500 LYS A 191 LYS A 192 16 142.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 163 0.09 SIDE CHAIN REMARK 500 2 TYR A 41 0.10 SIDE CHAIN REMARK 500 2 ARG A 62 0.08 SIDE CHAIN REMARK 500 3 ARG A 62 0.09 SIDE CHAIN REMARK 500 3 ARG A 187 0.08 SIDE CHAIN REMARK 500 5 TYR A 35 0.10 SIDE CHAIN REMARK 500 5 ARG A 163 0.10 SIDE CHAIN REMARK 500 6 TYR A 12 0.08 SIDE CHAIN REMARK 500 6 ARG A 62 0.09 SIDE CHAIN REMARK 500 7 ARG A 187 0.11 SIDE CHAIN REMARK 500 8 TYR A 129 0.07 SIDE CHAIN REMARK 500 10 ARG A 163 0.08 SIDE CHAIN REMARK 500 13 TYR A 35 0.09 SIDE CHAIN REMARK 500 13 ARG A 187 0.09 SIDE CHAIN REMARK 500 14 ARG A 187 0.11 SIDE CHAIN REMARK 500 15 TYR A 129 0.07 SIDE CHAIN REMARK 500 15 ARG A 187 0.09 SIDE CHAIN REMARK 500 17 TYR A 41 0.09 SIDE CHAIN REMARK 500 17 TYR A 162 0.07 SIDE CHAIN REMARK 500 18 ARG A 62 0.13 SIDE CHAIN REMARK 500 19 TYR A 35 0.09 SIDE CHAIN REMARK 500 19 ARG A 163 0.09 SIDE CHAIN REMARK 500 20 ARG A 163 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19414 RELATED DB: BMRB REMARK 900 RELATED ID: 2MBU RELATED DB: PDB REMARK 900 RELATED ID: 2MBS RELATED DB: PDB DBREF 2MBT A 4 192 UNP P0C2B2 DSBA_PSEAE 23 211 SEQADV 2MBT GLY A 3 UNP P0C2B2 EXPRESSION TAG SEQRES 1 A 190 GLY ASP ASP TYR THR ALA GLY LYS GLU TYR VAL GLU LEU SEQRES 2 A 190 SER SER PRO VAL PRO VAL SER GLN PRO GLY LYS ILE GLU SEQRES 3 A 190 VAL VAL GLU LEU PHE TRP TYR GLY CYS PRO HIS CYS TYR SEQRES 4 A 190 ALA PHE GLU PRO THR ILE VAL PRO TRP SER GLU LYS LEU SEQRES 5 A 190 PRO ALA ASP VAL HIS PHE VAL ARG LEU PRO ALA LEU PHE SEQRES 6 A 190 GLY GLY ILE TRP ASN VAL HIS GLY GLN MET PHE LEU THR SEQRES 7 A 190 LEU GLU SER MET GLY VAL GLU HIS ASP VAL HIS ASN ALA SEQRES 8 A 190 VAL PHE GLU ALA ILE HIS LYS GLU HIS LYS LYS LEU ALA SEQRES 9 A 190 THR PRO GLU GLU MET ALA ASP PHE LEU ALA GLY LYS GLY SEQRES 10 A 190 VAL ASP LYS GLU LYS PHE LEU SER THR TYR ASN SER PHE SEQRES 11 A 190 ALA ILE LYS GLY GLN MET GLU LYS ALA LYS LYS LEU ALA SEQRES 12 A 190 MET ALA TYR GLN VAL THR GLY VAL PRO THR MET VAL VAL SEQRES 13 A 190 ASN GLY LYS TYR ARG PHE ASP ILE GLY SER ALA GLY GLY SEQRES 14 A 190 PRO GLU GLU THR LEU LYS LEU ALA ASP TYR LEU ILE GLU SEQRES 15 A 190 LYS GLU ARG ALA ALA ALA LYS LYS HELIX 1 1 CYS A 37 ALA A 42 1 6 HELIX 2 2 PHE A 43 LYS A 53 1 11 HELIX 3 3 GLY A 68 MET A 84 1 17 HELIX 4 4 VAL A 90 HIS A 99 1 10 HELIX 5 5 THR A 107 GLY A 117 1 11 HELIX 6 6 ASP A 121 ASN A 130 1 10 HELIX 7 7 SER A 131 TYR A 148 1 18 HELIX 8 8 ASP A 165 GLY A 170 1 6 HELIX 9 9 GLY A 171 ALA A 188 1 18 HELIX 10 10 ALA A 189 LYS A 191 5 3 SHEET 1 A 5 VAL A 13 GLU A 14 0 SHEET 2 A 5 TYR A 162 PHE A 164 -1 O ARG A 163 N VAL A 13 SHEET 3 A 5 THR A 155 VAL A 158 -1 N MET A 156 O PHE A 164 SHEET 4 A 5 ILE A 27 PHE A 33 -1 N VAL A 30 O VAL A 157 SHEET 5 A 5 VAL A 58 PRO A 64 1 O HIS A 59 N ILE A 27 SSBOND 1 CYS A 37 CYS A 40 1555 1555 2.04 CISPEP 1 VAL A 153 PRO A 154 1 0.70 CISPEP 2 VAL A 153 PRO A 154 2 0.32 CISPEP 3 VAL A 153 PRO A 154 3 1.52 CISPEP 4 VAL A 153 PRO A 154 4 -2.08 CISPEP 5 VAL A 153 PRO A 154 5 3.41 CISPEP 6 VAL A 153 PRO A 154 6 -10.22 CISPEP 7 VAL A 153 PRO A 154 7 3.22 CISPEP 8 VAL A 153 PRO A 154 8 -12.03 CISPEP 9 VAL A 153 PRO A 154 9 -3.63 CISPEP 10 VAL A 153 PRO A 154 10 -4.26 CISPEP 11 VAL A 153 PRO A 154 11 -9.84 CISPEP 12 VAL A 153 PRO A 154 12 -14.92 CISPEP 13 VAL A 153 PRO A 154 13 -5.82 CISPEP 14 VAL A 153 PRO A 154 14 -12.09 CISPEP 15 VAL A 153 PRO A 154 15 -6.88 CISPEP 16 VAL A 153 PRO A 154 16 -2.00 CISPEP 17 VAL A 153 PRO A 154 17 -11.32 CISPEP 18 VAL A 153 PRO A 154 18 -1.01 CISPEP 19 VAL A 153 PRO A 154 19 -7.06 CISPEP 20 VAL A 153 PRO A 154 20 -2.27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1