HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 04-AUG-13 2MBU OBSLTE 12-APR-17 2MBU 5TLQ TITLE PADSBA PLUS MIPS-0000851 (3-[(2-METHYLBENZYL)SULFANYL]-4H-1,2,4- TITLE 2 TRIAZOL-4-AMINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 23-211; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: DSBA, PA5489; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)-GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A-PADSBA KEYWDS OXIDISED, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR K.RIMMER,B.MOHANTY,M.J.SCANLON REVDAT 3 19-APR-17 2MBU 1 REVDAT REVDAT 2 12-APR-17 2MBU 1 OBSLTE REVDAT 1 12-NOV-14 2MBU 0 JRNL AUTH K.RIMMER,B.MOHANTY,S.J.HEADEY,M.VAZIRANI,S.R.SHOULDICE, JRNL AUTH 2 C.MORTON,J.L.MARTIN,J.S.SIMPSON,M.J.SCANLON JRNL TITL THE DSBA OXIDOREDUCTASE FROM PSEUDOMONAS AERUGINOSA BINDS JRNL TITL 2 LIGANDS AT A SITE ALTERNATE TO OTHER DSBAS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK, HADDOCK, CNS REMARK 3 AUTHORS : ALEXANDRE BONVIN (HADDOCK), ALEXANDRE BONVIN REMARK 3 (HADDOCK), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103452. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 50 MM SODIUM CHLORIDE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 300 UM [U-100% 13C; U-100% 15N] REMARK 210 PADSBA, 3.3 MM MIPS, 1.7 % [U- REMARK 210 100% 2H] DMSO, 50 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 0.02 % SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D FILTER-EDITED 13C ALIPHATIC REMARK 210 NOESY; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 1D 1H REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 88 HD1 HIS A 91 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 2 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 2 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 3 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 3 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 4 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 4 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 5 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 5 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 6 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 6 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 7 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 7 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 8 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 8 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 9 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 9 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 10 TYR A 35 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 10 CYS A 37 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 4 73.71 45.16 REMARK 500 1 LYS A 10 -63.04 -128.90 REMARK 500 1 PRO A 18 -179.07 -69.58 REMARK 500 1 PRO A 24 -164.63 -70.89 REMARK 500 1 TYR A 35 -73.18 -61.51 REMARK 500 1 HIS A 39 -45.71 63.99 REMARK 500 1 HIS A 74 31.82 -65.93 REMARK 500 1 VAL A 90 -47.29 -144.93 REMARK 500 1 ASN A 92 -44.45 -136.40 REMARK 500 1 HIS A 102 87.99 58.40 REMARK 500 1 LYS A 104 -64.27 70.03 REMARK 500 1 ASN A 130 38.90 -92.60 REMARK 500 1 TYR A 148 4.97 -70.00 REMARK 500 1 ASN A 159 10.89 47.04 REMARK 500 1 LYS A 161 -41.27 -131.88 REMARK 500 1 ASP A 165 -178.80 -174.94 REMARK 500 1 SER A 168 -51.11 -128.32 REMARK 500 1 LYS A 191 76.82 56.38 REMARK 500 2 ASP A 4 73.64 45.23 REMARK 500 2 LYS A 10 -63.09 -128.94 REMARK 500 2 PRO A 18 -179.10 -69.62 REMARK 500 2 PRO A 24 -164.63 -70.94 REMARK 500 2 TYR A 35 -73.18 -61.44 REMARK 500 2 HIS A 39 -45.74 64.03 REMARK 500 2 HIS A 74 31.89 -65.84 REMARK 500 2 VAL A 90 -47.20 -145.04 REMARK 500 2 ASN A 92 -44.56 -136.39 REMARK 500 2 HIS A 102 88.01 58.42 REMARK 500 2 LYS A 104 -64.23 69.95 REMARK 500 2 ASN A 130 38.82 -92.63 REMARK 500 2 TYR A 148 5.00 -69.97 REMARK 500 2 ASN A 159 10.91 47.10 REMARK 500 2 LYS A 161 -41.28 -131.88 REMARK 500 2 ASP A 165 -178.84 -174.97 REMARK 500 2 SER A 168 -51.16 -128.38 REMARK 500 2 LYS A 191 76.84 56.35 REMARK 500 3 ASP A 4 73.72 45.18 REMARK 500 3 LYS A 10 -63.07 -128.92 REMARK 500 3 PRO A 18 -179.11 -69.63 REMARK 500 3 PRO A 24 -164.73 -70.83 REMARK 500 3 TYR A 35 -73.08 -61.53 REMARK 500 3 HIS A 39 -45.73 64.07 REMARK 500 3 HIS A 74 31.92 -65.93 REMARK 500 3 VAL A 90 -47.18 -144.94 REMARK 500 3 ASN A 92 -44.52 -136.38 REMARK 500 3 HIS A 102 88.01 58.46 REMARK 500 3 LYS A 104 -64.28 69.96 REMARK 500 3 ASN A 130 38.88 -92.64 REMARK 500 3 ASN A 159 10.84 47.12 REMARK 500 3 LYS A 161 -41.37 -131.81 REMARK 500 REMARK 500 THIS ENTRY HAS 174 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 129 0.07 SIDE CHAIN REMARK 500 1 ARG A 187 0.09 SIDE CHAIN REMARK 500 2 TYR A 129 0.07 SIDE CHAIN REMARK 500 2 ARG A 187 0.09 SIDE CHAIN REMARK 500 3 TYR A 129 0.07 SIDE CHAIN REMARK 500 3 ARG A 187 0.09 SIDE CHAIN REMARK 500 4 TYR A 129 0.07 SIDE CHAIN REMARK 500 4 ARG A 187 0.09 SIDE CHAIN REMARK 500 5 TYR A 129 0.07 SIDE CHAIN REMARK 500 5 ARG A 187 0.09 SIDE CHAIN REMARK 500 6 TYR A 129 0.07 SIDE CHAIN REMARK 500 6 ARG A 187 0.09 SIDE CHAIN REMARK 500 7 TYR A 129 0.07 SIDE CHAIN REMARK 500 7 ARG A 187 0.09 SIDE CHAIN REMARK 500 8 TYR A 129 0.07 SIDE CHAIN REMARK 500 8 ARG A 187 0.09 SIDE CHAIN REMARK 500 9 TYR A 129 0.07 SIDE CHAIN REMARK 500 9 ARG A 187 0.09 SIDE CHAIN REMARK 500 10 TYR A 129 0.07 SIDE CHAIN REMARK 500 10 ARG A 187 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1YO A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19414 RELATED DB: BMRB REMARK 900 RELATED ID: 2MBT RELATED DB: PDB REMARK 900 RELATED ID: 2MBS RELATED DB: PDB DBREF 2MBU A 4 192 UNP P0C2B2 DSBA_PSEAE 23 211 SEQADV 2MBU GLY A 3 UNP P0C2B2 EXPRESSION TAG SEQRES 1 A 190 GLY ASP ASP TYR THR ALA GLY LYS GLU TYR VAL GLU LEU SEQRES 2 A 190 SER SER PRO VAL PRO VAL SER GLN PRO GLY LYS ILE GLU SEQRES 3 A 190 VAL VAL GLU LEU PHE TRP TYR GLY CYS PRO HIS CYS TYR SEQRES 4 A 190 ALA PHE GLU PRO THR ILE VAL PRO TRP SER GLU LYS LEU SEQRES 5 A 190 PRO ALA ASP VAL HIS PHE VAL ARG LEU PRO ALA LEU PHE SEQRES 6 A 190 GLY GLY ILE TRP ASN VAL HIS GLY GLN MET PHE LEU THR SEQRES 7 A 190 LEU GLU SER MET GLY VAL GLU HIS ASP VAL HIS ASN ALA SEQRES 8 A 190 VAL PHE GLU ALA ILE HIS LYS GLU HIS LYS LYS LEU ALA SEQRES 9 A 190 THR PRO GLU GLU MET ALA ASP PHE LEU ALA GLY LYS GLY SEQRES 10 A 190 VAL ASP LYS GLU LYS PHE LEU SER THR TYR ASN SER PHE SEQRES 11 A 190 ALA ILE LYS GLY GLN MET GLU LYS ALA LYS LYS LEU ALA SEQRES 12 A 190 MET ALA TYR GLN VAL THR GLY VAL PRO THR MET VAL VAL SEQRES 13 A 190 ASN GLY LYS TYR ARG PHE ASP ILE GLY SER ALA GLY GLY SEQRES 14 A 190 PRO GLU GLU THR LEU LYS LEU ALA ASP TYR LEU ILE GLU SEQRES 15 A 190 LYS GLU ARG ALA ALA ALA LYS LYS HET 1YO A 201 27 HETNAM 1YO 3-[(2-METHYLBENZYL)SULFANYL]-4H-1,2,4-TRIAZOL-4-AMINE FORMUL 2 1YO C10 H12 N4 S HELIX 1 1 CYS A 40 ALA A 42 5 3 HELIX 2 2 PHE A 43 LYS A 53 1 11 HELIX 3 3 GLY A 69 TRP A 71 5 3 HELIX 4 4 ASN A 72 MET A 84 1 13 HELIX 5 5 ASN A 92 LYS A 100 1 9 HELIX 6 6 THR A 107 ALA A 116 1 10 HELIX 7 7 GLY A 117 GLY A 119 5 3 HELIX 8 8 ASP A 121 ASN A 130 1 10 HELIX 9 9 SER A 131 TYR A 148 1 18 HELIX 10 10 ASP A 165 GLY A 170 1 6 HELIX 11 11 GLY A 171 ALA A 188 1 18 HELIX 12 12 ALA A 189 LYS A 191 5 3 SHEET 1 A 5 VAL A 13 GLU A 14 0 SHEET 2 A 5 TYR A 162 PHE A 164 -1 O ARG A 163 N VAL A 13 SHEET 3 A 5 THR A 155 VAL A 158 -1 N MET A 156 O PHE A 164 SHEET 4 A 5 ILE A 27 PHE A 33 -1 N VAL A 30 O VAL A 157 SHEET 5 A 5 VAL A 58 PRO A 64 1 O LEU A 63 N GLU A 31 SSBOND 1 CYS A 37 CYS A 40 1555 1555 2.03 CISPEP 1 VAL A 153 PRO A 154 1 -6.78 CISPEP 2 VAL A 153 PRO A 154 2 -6.78 CISPEP 3 VAL A 153 PRO A 154 3 -6.86 CISPEP 4 VAL A 153 PRO A 154 4 -6.76 CISPEP 5 VAL A 153 PRO A 154 5 -6.82 CISPEP 6 VAL A 153 PRO A 154 6 -6.81 CISPEP 7 VAL A 153 PRO A 154 7 -6.81 CISPEP 8 VAL A 153 PRO A 154 8 -6.78 CISPEP 9 VAL A 153 PRO A 154 9 -6.76 CISPEP 10 VAL A 153 PRO A 154 10 -6.79 SITE 1 AC1 3 LEU A 63 GLN A 137 LEU A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1