HEADER ISOMERASE 16-AUG-13 2MC9 TITLE CAT R 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE, CYCLOPHILIN, CYCLOSPORIN A-BINDING PROTEIN, COMPND 5 ROTAMASE; COMPND 6 EC: 5.2.1.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CATHARANTHUS ROSEUS; SOURCE 3 ORGANISM_COMMON: CHATAS,CHULA,OLD-MAID,ROSY PERIWINKLE; SOURCE 4 ORGANISM_TAXID: 4058; SOURCE 5 GENE: PCKR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PDEST 566 KEYWDS CYCLOPHILIN, ALLERGEN, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.MUELLER,R.LONDON,D.GHOSH REVDAT 4 15-MAY-24 2MC9 1 REMARK REVDAT 3 14-JUN-23 2MC9 1 REMARK SEQADV REVDAT 2 08-OCT-14 2MC9 1 JRNL REVDAT 1 25-JUN-14 2MC9 0 JRNL AUTH D.GHOSH,G.A.MUELLER,G.SCHRAMM,L.L.EDWARDS,A.PETERSEN, JRNL AUTH 2 R.E.LONDON,H.HAAS,S.GUPTA BHATTACHARYA JRNL TITL PRIMARY IDENTIFICATION, BIOCHEMICAL CHARACTERIZATION, AND JRNL TITL 2 IMMUNOLOGIC PROPERTIES OF THE ALLERGENIC POLLEN CYCLOPHILIN JRNL TITL 3 CAT R 1. JRNL REF J.BIOL.CHEM. V. 289 21374 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24939849 JRNL DOI 10.1074/JBC.M114.559971 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CYANA, GENMR REMARK 3 AUTHORS : VARIAN (VNMRJ) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL STRUCTURES CALCULATED WITH REMARK 3 CYANA. THE DERIVED DISTANCE RESTRAINTS WERE SUBMITTED TO GENMR. REMARK 4 REMARK 4 2MC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000103466. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.075 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 25 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCA; 3D HNCACB; REMARK 210 3D HN(CO)CA; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, CYANA, PSVS, REMARK 210 GENMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 23 -60.59 -102.84 REMARK 500 1 ASP A 33 -73.55 -120.76 REMARK 500 1 LYS A 57 76.91 -161.20 REMARK 500 1 PHE A 73 -83.28 -67.51 REMARK 500 1 ALA A 82 -56.22 -177.42 REMARK 500 1 PHE A 101 69.88 -110.27 REMARK 500 2 LYS A 57 79.56 -174.56 REMARK 500 2 HIS A 60 93.28 -169.70 REMARK 500 2 PHE A 73 -73.48 -70.21 REMARK 500 2 MET A 74 -165.66 178.45 REMARK 500 2 ALA A 82 -54.08 178.02 REMARK 500 2 HIS A 105 76.50 -61.01 REMARK 500 2 GLU A 133 -50.46 -154.57 REMARK 500 2 ASP A 136 78.75 47.26 REMARK 500 3 PRO A 8 -179.17 -66.83 REMARK 500 3 ASN A 9 78.23 73.99 REMARK 500 3 ALA A 23 -61.31 -101.49 REMARK 500 3 PRO A 36 -73.64 -72.84 REMARK 500 3 LYS A 57 76.80 -160.41 REMARK 500 3 PHE A 73 -86.16 -72.42 REMARK 500 3 MET A 74 -168.60 -179.52 REMARK 500 3 ALA A 82 -55.11 174.79 REMARK 500 3 GLU A 99 -31.11 -153.29 REMARK 500 3 HIS A 105 83.50 -68.02 REMARK 500 4 ALA A 23 -65.25 -104.07 REMARK 500 4 THR A 35 83.32 -150.39 REMARK 500 4 LYS A 57 80.21 -176.62 REMARK 500 4 LEU A 59 71.67 -100.50 REMARK 500 4 PHE A 73 -83.85 -69.67 REMARK 500 4 MET A 74 -172.36 -178.93 REMARK 500 4 ALA A 82 -57.46 171.26 REMARK 500 4 PHE A 101 44.09 -109.81 REMARK 500 4 TRP A 134 6.55 -155.31 REMARK 500 5 LYS A 57 82.61 167.86 REMARK 500 5 HIS A 60 110.03 166.51 REMARK 500 5 VAL A 69 80.04 -150.80 REMARK 500 5 PHE A 73 -94.02 -132.93 REMARK 500 5 ALA A 82 -53.28 173.46 REMARK 500 5 PHE A 101 52.26 -96.43 REMARK 500 5 HIS A 105 81.25 -59.06 REMARK 500 6 THR A 35 83.62 -152.63 REMARK 500 6 LYS A 57 81.47 -179.50 REMARK 500 6 ASP A 63 33.72 74.76 REMARK 500 6 VAL A 69 49.05 -151.57 REMARK 500 6 PHE A 73 -87.27 -68.36 REMARK 500 6 MET A 74 -175.16 -179.59 REMARK 500 6 ALA A 82 -56.90 165.30 REMARK 500 6 GLU A 99 -89.35 -80.40 REMARK 500 7 PRO A 8 -175.97 -49.12 REMARK 500 7 LYS A 57 75.00 -157.47 REMARK 500 REMARK 500 THIS ENTRY HAS 153 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19432 RELATED DB: BMRB DBREF 2MC9 A 7 178 UNP Q39613 CYPH_CATRO 1 172 SEQADV 2MC9 GLY A 1 UNP Q39613 EXPRESSION TAG SEQADV 2MC9 SER A 2 UNP Q39613 EXPRESSION TAG SEQADV 2MC9 PHE A 3 UNP Q39613 EXPRESSION TAG SEQADV 2MC9 THR A 4 UNP Q39613 EXPRESSION TAG SEQADV 2MC9 GLY A 5 UNP Q39613 EXPRESSION TAG SEQADV 2MC9 SER A 6 UNP Q39613 EXPRESSION TAG SEQRES 1 A 178 GLY SER PHE THR GLY SER MET PRO ASN PRO ARG VAL PHE SEQRES 2 A 178 PHE ASP MET SER VAL GLY GLY GLN PRO ALA GLY ARG ILE SEQRES 3 A 178 VAL MET GLU LEU PHE ALA ASP THR THR PRO ARG THR ALA SEQRES 4 A 178 GLU ASN PHE ARG ALA LEU CYS THR GLY GLU LYS GLY THR SEQRES 5 A 178 GLY ARG SER GLY LYS PRO LEU HIS TYR LYS ASP SER SER SEQRES 6 A 178 PHE HIS ARG VAL ILE PRO GLY PHE MET CYS GLN GLY GLY SEQRES 7 A 178 ASP PHE THR ALA GLY ASN GLY THR GLY GLY GLU SER ILE SEQRES 8 A 178 TYR GLY ALA LYS PHE ALA ASP GLU ASN PHE ILE LYS LYS SEQRES 9 A 178 HIS THR GLY PRO GLY ILE LEU SER MET ALA ASN ALA GLY SEQRES 10 A 178 PRO ASN THR ASN GLY SER GLN PHE PHE ILE CYS THR ALA SEQRES 11 A 178 LYS THR GLU TRP LEU ASP GLY LYS HIS VAL VAL PHE GLY SEQRES 12 A 178 GLN VAL VAL GLU GLY MET ASP VAL VAL LYS ALA ILE GLU SEQRES 13 A 178 LYS VAL GLY SER SER SER GLY ARG THR ALA LYS LYS VAL SEQRES 14 A 178 VAL VAL GLU ASP CYS GLY GLN LEU SER HELIX 1 1 THR A 35 GLY A 48 1 14 HELIX 2 2 GLY A 148 VAL A 158 1 11 SHEET 1 A 7 CYS A 75 GLN A 76 0 SHEET 2 A 7 PHE A 125 CYS A 128 -1 O ILE A 127 N CYS A 75 SHEET 3 A 7 ILE A 110 MET A 113 -1 N SER A 112 O PHE A 126 SHEET 4 A 7 VAL A 140 VAL A 145 -1 O GLY A 143 N LEU A 111 SHEET 5 A 7 GLN A 21 LEU A 30 -1 N GLU A 29 O GLN A 144 SHEET 6 A 7 ARG A 11 VAL A 18 -1 N VAL A 12 O MET A 28 SHEET 7 A 7 VAL A 169 GLN A 176 -1 O VAL A 170 N SER A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1