HEADER HYDROLASE 18-AUG-13 2MCD TITLE BACKBONE 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR MURINE TITLE 2 NOROVIRUS NS1/2 D94E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MURINE NOROVIRUS 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE NOROVIRUS 1; SOURCE 3 ORGANISM_TAXID: 223997; SOURCE 4 GENE: NS1/2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET-BNK KEYWDS NOROVIRUS, NS1/2, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.BORIN,A.M.KREZEL REVDAT 5 14-JUN-23 2MCD 1 REMARK SEQADV REVDAT 4 22-FEB-17 2MCD 1 REMARK REVDAT 3 25-JUN-14 2MCD 1 JRNL REVDAT 2 12-FEB-14 2MCD 1 JRNL REVDAT 1 18-DEC-13 2MCD 0 JRNL AUTH B.N.BORIN,W.TANG,T.J.NICE,B.T.MCCUNE,H.W.VIRGIN,A.M.KREZEL JRNL TITL MURINE NOROVIRUS PROTEIN NS1/2 ASPARTATE TO GLUTAMATE JRNL TITL 2 MUTATION, SUFFICIENT FOR PERSISTENCE, REORIENTS SIDE CHAIN JRNL TITL 3 OF SURFACE EXPOSED TRYPTOPHAN WITHIN A NOVEL STRUCTURED JRNL TITL 4 DOMAIN. JRNL REF PROTEINS V. 82 1200 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 24273131 JRNL DOI 10.1002/PROT.24484 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MCD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000103470. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.35 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 300 MM REMARK 210 SODIUM CHLORIDE, 1 MM [U-100% REMARK 210 15N] PROTEIN, DSS, 90% H2O/10% REMARK 210 D2O; 50 MM SODIUM PHOSPHATE, 300 REMARK 210 MM SODIUM CHLORIDE, 1 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, DSS, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; CBCANH; REMARK 210 CBCACONH; HCCCONH; 2D 1H-1H REMARK 210 NOESY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TALOS, SPARKY, CYANA, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 900 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 5 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 8 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 11 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 16 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 19 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 19 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 20 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 38 18.37 -143.13 REMARK 500 1 ASN A 46 -169.93 57.23 REMARK 500 2 LEU A 37 -3.35 -141.58 REMARK 500 2 GLU A 42 -7.92 60.64 REMARK 500 2 MET A 48 -42.83 -144.84 REMARK 500 2 GLU A 52 13.50 -140.00 REMARK 500 2 ALA A 55 40.77 -81.62 REMARK 500 3 HIS A 10 34.46 -140.17 REMARK 500 3 SER A 39 13.22 -141.02 REMARK 500 3 GLN A 56 75.65 -154.65 REMARK 500 3 PRO A 95 5.79 -63.90 REMARK 500 5 GLU A 54 -28.25 60.78 REMARK 500 5 GLN A 56 51.02 -143.86 REMARK 500 6 SER A 39 -4.73 -145.96 REMARK 500 6 GLU A 44 11.99 -142.39 REMARK 500 6 MET A 48 52.25 -157.87 REMARK 500 7 GLU A 42 17.03 58.09 REMARK 500 7 ILE A 45 57.42 -90.73 REMARK 500 7 MET A 48 34.93 -149.78 REMARK 500 7 GLN A 56 49.14 -144.10 REMARK 500 8 GLN A 56 55.24 -144.69 REMARK 500 9 MET A 48 35.65 -155.86 REMARK 500 9 PRO A 95 6.03 -63.81 REMARK 500 10 SER A 39 82.52 -158.99 REMARK 500 10 GLU A 40 -11.81 -140.62 REMARK 500 10 GLN A 56 58.50 -141.96 REMARK 500 11 HIS A 8 44.60 -80.94 REMARK 500 11 ALA A 59 71.47 52.77 REMARK 500 12 ALA A 33 65.98 -150.85 REMARK 500 12 SER A 35 47.68 -148.98 REMARK 500 12 SER A 39 12.64 -145.16 REMARK 500 12 GLU A 42 -8.01 61.15 REMARK 500 13 SER A 4 171.40 59.39 REMARK 500 13 HIS A 6 -85.45 -100.28 REMARK 500 13 HIS A 7 -59.52 -144.20 REMARK 500 13 ALA A 33 73.12 -150.39 REMARK 500 13 SER A 39 19.07 -141.12 REMARK 500 13 GLU A 42 14.18 58.67 REMARK 500 13 GLN A 53 37.17 -149.79 REMARK 500 13 PRO A 95 7.37 -63.94 REMARK 500 14 ARG A 2 158.17 64.29 REMARK 500 14 VAL A 29 -42.61 -156.71 REMARK 500 14 SER A 30 149.28 61.85 REMARK 500 14 PHE A 31 -15.66 -141.82 REMARK 500 14 GLU A 42 15.44 59.41 REMARK 500 14 GLN A 53 -36.04 -130.49 REMARK 500 14 ALA A 55 45.65 -151.49 REMARK 500 14 GLN A 56 59.37 -143.74 REMARK 500 15 SER A 4 33.13 -150.68 REMARK 500 15 ALA A 33 64.45 -150.36 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19436 RELATED DB: BMRB DBREF 2MCD A 28 114 UNP Q80J95 Q80J95_9CALI 28 114 SEQADV 2MCD MET A 1 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD ARG A 2 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD GLY A 3 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD SER A 4 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD HIS A 5 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD HIS A 6 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD HIS A 7 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD HIS A 8 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD HIS A 9 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD HIS A 10 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD GLY A 11 UNP Q80J95 EXPRESSION TAG SEQADV 2MCD GLU A 94 UNP Q80J95 ASP 94 ENGINEERED MUTATION SEQRES 1 A 98 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 A 98 SER PHE GLY ALA PRO SER PRO LEU SER SER GLU SER GLU SEQRES 3 A 98 ASP GLU ILE ASN TYR MET THR PRO PRO GLU GLN GLU ALA SEQRES 4 A 98 GLN PRO GLY ALA LEU ALA ALA LEU HIS ALA GLU GLY PRO SEQRES 5 A 98 LEU ALA GLY LEU PRO VAL THR ARG SER ASP ALA ARG VAL SEQRES 6 A 98 LEU ILE PHE ASN GLU TRP GLU GLU ARG LYS LYS SER GLU SEQRES 7 A 98 PRO TRP LEU ARG LEU ASP MET SER ASP LYS ALA ILE PHE SEQRES 8 A 98 ARG ARG TYR PRO HIS LEU ARG HELIX 1 1 GLY A 67 LEU A 69 1 3 HELIX 2 2 ARG A 76 SER A 93 1 18 HELIX 3 3 ASP A 103 ARG A 109 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1