HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-AUG-13 2MCT TITLE NMR STRUCTURE OF THE PROTEIN ZP_02042476.1 FROM RUMINOCOCCUS GNAVUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS GNAVUS; SOURCE 3 ORGANISM_TAXID: 411470; SOURCE 4 STRAIN: ATCC 29149; SOURCE 5 GENE: RUMGNA_03278; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSPEEDET KEYWDS UNKNOWN FUNCTION, STRUCTURAL GENOMICS, PSI-BIOLOGY, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.T.MARTIN,P.SERRANO,M.GERALT,S.DUTTA,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 3 14-JUN-23 2MCT 1 REMARK REVDAT 2 01-FEB-23 2MCT 1 REMARK SEQADV REVDAT 1 13-NOV-13 2MCT 0 JRNL AUTH B.T.MARTIN,K.WUTHRICH,P.SERRANO,M.GERALT,S.K.DUTTA JRNL TITL NMR STRUCTURE OF THE PROTEIN ZP_02042476.1 FROM RUMINOCOCCUS JRNL TITL 2 GNAVUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPALP REMARK 3 AUTHORS : G NTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MCT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103483. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.220 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 50 MM SODIUM CHLORIDE, REMARK 210 20 MM SODIUM PHOSPHATE, 5 MM REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; APSY REMARK 210 4D-HACANH; APSY 5D-CBCACONH; REMARK 210 APSY 5D-HACACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, UNIO 2010, CARA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 6 173.09 -56.89 REMARK 500 1 LYS A 7 172.33 -56.87 REMARK 500 1 ASN A 20 -154.69 -80.13 REMARK 500 1 THR A 45 -176.36 65.57 REMARK 500 1 ILE A 50 35.94 -85.81 REMARK 500 1 ASN A 79 4.75 57.77 REMARK 500 1 PRO A 87 -162.53 -61.09 REMARK 500 1 TYR A 88 -13.41 -43.06 REMARK 500 2 SER A 2 166.65 64.29 REMARK 500 2 PRO A 6 -178.33 -68.49 REMARK 500 2 LYS A 7 175.88 -58.42 REMARK 500 2 SER A 21 45.98 -86.51 REMARK 500 2 THR A 45 -174.85 65.46 REMARK 500 2 ILE A 50 22.88 -144.60 REMARK 500 2 ASN A 66 -152.20 -133.10 REMARK 500 2 ASN A 67 50.21 -46.04 REMARK 500 2 ASN A 79 -7.70 68.02 REMARK 500 2 PRO A 87 -162.44 -56.61 REMARK 500 2 TYR A 88 -8.26 -44.06 REMARK 500 2 ILE A 91 41.87 -140.62 REMARK 500 3 SER A 2 165.74 51.84 REMARK 500 3 SER A 21 59.57 -90.10 REMARK 500 3 THR A 45 -172.90 65.59 REMARK 500 3 GLU A 65 106.73 -58.84 REMARK 500 3 ASN A 79 -0.17 62.67 REMARK 500 3 PRO A 87 -161.59 -59.62 REMARK 500 3 TYR A 88 -12.65 -42.82 REMARK 500 3 LYS A 89 68.72 -115.68 REMARK 500 3 ILE A 91 47.24 -141.59 REMARK 500 4 THR A 45 -174.07 58.99 REMARK 500 4 ILE A 50 32.47 -141.75 REMARK 500 4 ASN A 79 -1.08 68.85 REMARK 500 4 CYS A 86 168.56 176.84 REMARK 500 4 PRO A 87 -160.59 -54.13 REMARK 500 4 TYR A 88 -4.99 -42.83 REMARK 500 5 SER A 2 164.94 67.70 REMARK 500 5 SER A 21 24.70 -71.66 REMARK 500 5 TYR A 26 79.39 -116.14 REMARK 500 5 THR A 45 -172.82 65.38 REMARK 500 5 ILE A 50 5.66 -68.11 REMARK 500 5 ASN A 79 -0.75 64.81 REMARK 500 5 PRO A 87 -160.97 -57.86 REMARK 500 5 TYR A 88 0.75 -42.68 REMARK 500 6 SER A 2 165.91 55.61 REMARK 500 6 PHE A 18 -178.46 -68.29 REMARK 500 6 SER A 21 5.03 -67.32 REMARK 500 6 THR A 45 -174.16 58.04 REMARK 500 6 ILE A 50 17.60 -145.83 REMARK 500 6 ASN A 67 -3.32 62.84 REMARK 500 6 ASN A 79 -11.95 61.77 REMARK 500 REMARK 500 THIS ENTRY HAS 175 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 60 THR A 61 5 -148.16 REMARK 500 MET A 70 THR A 71 9 149.33 REMARK 500 GLY A 68 GLY A 69 12 145.24 REMARK 500 GLU A 93 ILE A 94 12 148.30 REMARK 500 GLN A 48 SER A 49 17 147.70 REMARK 500 GLY A 1 SER A 2 20 149.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 26 0.09 SIDE CHAIN REMARK 500 1 TYR A 59 0.09 SIDE CHAIN REMARK 500 2 TYR A 76 0.09 SIDE CHAIN REMARK 500 3 TYR A 92 0.07 SIDE CHAIN REMARK 500 5 TYR A 59 0.07 SIDE CHAIN REMARK 500 5 TYR A 75 0.07 SIDE CHAIN REMARK 500 7 TYR A 76 0.07 SIDE CHAIN REMARK 500 7 TYR A 92 0.08 SIDE CHAIN REMARK 500 10 ARG A 44 0.12 SIDE CHAIN REMARK 500 10 TYR A 92 0.08 SIDE CHAIN REMARK 500 13 TYR A 26 0.10 SIDE CHAIN REMARK 500 13 TYR A 76 0.10 SIDE CHAIN REMARK 500 14 TYR A 26 0.11 SIDE CHAIN REMARK 500 14 TYR A 53 0.08 SIDE CHAIN REMARK 500 15 TYR A 82 0.08 SIDE CHAIN REMARK 500 15 TYR A 88 0.10 SIDE CHAIN REMARK 500 16 ARG A 44 0.09 SIDE CHAIN REMARK 500 16 TYR A 53 0.08 SIDE CHAIN REMARK 500 18 TYR A 92 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19453 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-417406 RELATED DB: TARGETTRACK DBREF 2MCT A 2 102 UNP A7B6R4 A7B6R4_RUMGN 24 124 SEQADV 2MCT GLY A 1 UNP A7B6R4 EXPRESSION TAG SEQRES 1 A 102 GLY SER PRO ILE LEU PRO LYS ALA GLU ASN VAL ASP SER SEQRES 2 A 102 ILE CYS ILE ASP PHE THR ASN SER ILE GLN LYS ILE TYR SEQRES 3 A 102 ASP ASP SER GLU SER ILE GLN LYS ILE LEU SER GLU ILE SEQRES 4 A 102 ALA THR GLY LYS ARG THR GLU LYS GLN SER ILE GLN ASP SEQRES 5 A 102 TYR PRO SER ALA GLU GLU TYR GLY THR ILE ASN ILE GLU SEQRES 6 A 102 ASN ASN GLY GLY MET THR THR MET PHE TYR TYR GLU GLU SEQRES 7 A 102 ASN GLY LYS TYR TYR ILE GLU CYS PRO TYR LYS GLY ILE SEQRES 8 A 102 TYR GLU ILE GLU ASN ASN PHE GLU ASP MET ILE HELIX 1 1 ASP A 28 ILE A 39 1 12 SHEET 1 A 6 GLN A 23 TYR A 26 0 SHEET 2 A 6 VAL A 11 ASP A 17 -1 N ILE A 14 O TYR A 26 SHEET 3 A 6 GLY A 60 ASN A 66 -1 O ASN A 63 N CYS A 15 SHEET 4 A 6 GLY A 69 GLU A 78 -1 O GLY A 69 N ASN A 66 SHEET 5 A 6 LYS A 81 GLU A 85 -1 O LYS A 81 N GLU A 78 SHEET 6 A 6 ILE A 91 ILE A 94 -1 O ILE A 94 N TYR A 82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1