HEADER IMMUNE SYSTEM 27-AUG-13 2MCY TITLE CR1 SUSHI DOMAINS 2 AND 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT RECEPTOR TYPE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUSHI DOMAINS 2 AND 3(UNP RESIDUES 102-233); COMPND 5 SYNONYM: C3B/C4B RECEPTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CR1, C3BR; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZAB KEYWDS CR1, PFRH4, MALARIA, CCP, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.J.PARK,M.J.GUARIENTO,M.MACIEJEWSKI,R.HAUART,W.THAM,A.F.COWMAN, AUTHOR 2 C.Q.SCHMIDT,H.MARTENS,K.M.LISZEWSKI,D.HOURCADE,P.N.BARLOW, AUTHOR 3 J.P.ATKINSON REVDAT 3 22-JAN-14 2MCY 1 JRNL REVDAT 2 04-DEC-13 2MCY 1 JRNL REVDAT 1 13-NOV-13 2MCY 0 JRNL AUTH H.J.PARK,M.GUARIENTO,M.MACIEJEWSKI,R.HAUHART,W.H.THAM, JRNL AUTH 2 A.F.COWMAN,C.Q.SCHMIDT,H.D.MERTENS,M.K.LISZEWSKI, JRNL AUTH 3 D.E.HOURCADE,P.N.BARLOW,J.P.ATKINSON JRNL TITL USING MUTAGENESIS AND STRUCTURAL BIOLOGY TO MAP THE BINDING JRNL TITL 2 SITE FOR THE PLASMODIUM FALCIPARUM MEROZOITE PROTEIN PFRH4 JRNL TITL 3 ON THE HUMAN IMMUNE ADHERENCE RECEPTOR. JRNL REF J.BIOL.CHEM. V. 289 450 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24214979 JRNL DOI 10.1074/JBC.M113.520346 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB103488. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 CR1_2-3, 10 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O; 0.8 MM [U-99% REMARK 210 13C; U-99% 15N] CR1_2-3, 10 MM REMARK 210 SODIUM PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; 3D HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, AZARA, X-PLOR_NIH, REMARK 210 CCPNMR_ANALYSIS, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLU A 57 REMARK 465 ALA A 58 REMARK 465 GLU A 59 REMARK 465 ALA A 60 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 135 HH21 ARG A 141 1.59 REMARK 500 H ILE A 137 O THR A 151 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 CYS A 63 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 6 CYS A 104 CA - CB - SG ANGL. DEV. = 9.0 DEGREES REMARK 500 9 CYS A 63 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 9 CYS A 104 CA - CB - SG ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 65 144.03 93.22 REMARK 500 1 MET A 73 -90.41 -89.84 REMARK 500 1 THR A 117 126.42 72.50 REMARK 500 1 ILE A 123 107.77 -54.32 REMARK 500 1 LEU A 127 96.14 38.10 REMARK 500 1 ASP A 135 -144.44 40.91 REMARK 500 1 PHE A 144 -156.59 -101.28 REMARK 500 1 TRP A 184 -169.43 -69.02 REMARK 500 2 ASN A 65 142.02 125.06 REMARK 500 2 PRO A 69 -169.31 -71.58 REMARK 500 2 MET A 73 79.83 84.07 REMARK 500 2 ILE A 77 -70.83 15.60 REMARK 500 2 GLU A 116 47.96 88.11 REMARK 500 2 THR A 117 123.19 -6.63 REMARK 500 2 ILE A 123 104.06 -48.53 REMARK 500 2 HIS A 145 -143.71 25.88 REMARK 500 2 SER A 176 18.25 37.04 REMARK 500 2 ALA A 188 110.25 -35.02 REMARK 500 3 ASN A 65 147.17 100.64 REMARK 500 3 PRO A 66 155.97 -17.89 REMARK 500 3 HIS A 75 -33.56 -36.22 REMARK 500 3 ILE A 77 -70.64 -113.23 REMARK 500 3 LYS A 87 97.74 42.51 REMARK 500 3 GLU A 116 19.12 59.01 REMARK 500 3 THR A 117 123.54 61.42 REMARK 500 3 ASP A 135 -152.71 -141.56 REMARK 500 3 GLU A 142 86.63 53.95 REMARK 500 3 HIS A 145 -107.07 -23.66 REMARK 500 3 LYS A 162 75.62 61.42 REMARK 500 3 THR A 175 73.80 -150.14 REMARK 500 3 ASN A 177 -85.86 -159.88 REMARK 500 3 GLN A 180 -93.03 -39.39 REMARK 500 3 CYS A 191 50.17 -92.89 REMARK 500 4 ASN A 65 142.69 78.52 REMARK 500 4 ASP A 68 116.63 71.17 REMARK 500 4 THR A 117 121.49 83.62 REMARK 500 4 CYS A 125 34.26 30.47 REMARK 500 4 LEU A 127 106.37 58.97 REMARK 500 4 ASP A 135 -175.86 57.70 REMARK 500 4 ARG A 141 85.68 42.47 REMARK 500 4 GLU A 142 151.95 86.76 REMARK 500 4 PHE A 144 -101.57 -104.21 REMARK 500 4 SER A 158 25.47 48.74 REMARK 500 4 ASP A 179 -87.68 -132.32 REMARK 500 5 ASN A 65 153.22 77.36 REMARK 500 5 PRO A 66 161.26 -22.16 REMARK 500 5 ASP A 68 58.63 92.64 REMARK 500 5 GLU A 116 17.23 59.46 REMARK 500 5 THR A 117 133.43 62.56 REMARK 500 5 CYS A 125 -35.64 66.88 REMARK 500 REMARK 500 THIS ENTRY HAS 220 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 153 0.09 SIDE CHAIN REMARK 500 7 ARG A 153 0.07 SIDE CHAIN REMARK 500 14 ARG A 153 0.16 SIDE CHAIN REMARK 500 18 ARG A 95 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 20 TYR A 88 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19458 RELATED DB: BMRB REMARK 900 RELATED ID: 2MCZ RELATED DB: PDB DBREF 2MCY A 61 192 UNP P17927 CR1_HUMAN 102 233 SEQADV 2MCY GLU A 57 UNP P17927 EXPRESSION TAG SEQADV 2MCY ALA A 58 UNP P17927 EXPRESSION TAG SEQADV 2MCY GLU A 59 UNP P17927 EXPRESSION TAG SEQADV 2MCY ALA A 60 UNP P17927 EXPRESSION TAG SEQADV 2MCY THR A 115 UNP P17927 ASN 156 CONFLICT SEQRES 1 A 136 GLU ALA GLU ALA LYS SER CYS ARG ASN PRO PRO ASP PRO SEQRES 2 A 136 VAL ASN GLY MET VAL HIS VAL ILE LYS GLY ILE GLN PHE SEQRES 3 A 136 GLY SER GLN ILE LYS TYR SER CYS THR LYS GLY TYR ARG SEQRES 4 A 136 LEU ILE GLY SER SER SER ALA THR CYS ILE ILE SER GLY SEQRES 5 A 136 ASP THR VAL ILE TRP ASP THR GLU THR PRO ILE CYS ASP SEQRES 6 A 136 ARG ILE PRO CYS GLY LEU PRO PRO THR ILE THR ASN GLY SEQRES 7 A 136 ASP PHE ILE SER THR ASN ARG GLU ASN PHE HIS TYR GLY SEQRES 8 A 136 SER VAL VAL THR TYR ARG CYS ASN PRO GLY SER GLY GLY SEQRES 9 A 136 ARG LYS VAL PHE GLU LEU VAL GLY GLU PRO SER ILE TYR SEQRES 10 A 136 CYS THR SER ASN ASP ASP GLN VAL GLY ILE TRP SER GLY SEQRES 11 A 136 PRO ALA PRO GLN CYS ILE SHEET 1 A 4 MET A 73 VAL A 76 0 SHEET 2 A 4 SER A 84 SER A 89 -1 SHEET 3 A 4 SER A 101 SER A 107 -1 SHEET 4 A 4 THR A 110 TRP A 113 -1 SHEET 1 B 2 TYR A 94 LEU A 96 0 SHEET 2 B 2 CYS A 120 ARG A 122 -1 SHEET 1 C 2 SER A 148 THR A 151 0 SHEET 2 C 2 SER A 171 CYS A 174 -1 SHEET 1 D 2 PRO A 156 GLY A 157 0 SHEET 2 D 2 ARG A 161 LYS A 162 -1 SSBOND 1 CYS A 63 CYS A 104 1555 1555 2.00 SSBOND 2 CYS A 90 CYS A 120 1555 1555 2.00 SSBOND 3 CYS A 125 CYS A 174 1555 1555 2.05 SSBOND 4 CYS A 154 CYS A 191 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1