data_2MD9 # _entry.id 2MD9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MD9 pdb_00002md9 10.2210/pdb2md9/pdb RCSB RCSB103499 ? ? BMRB 19479 ? ? WWPDB D_1000103499 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 2GDY PDB 'Solution structure of the B. brevis TycC3-PCP in A-state' unspecified 2GDX PDB 'Solution structure of the B. brevis TycC3-PCP in H-state' unspecified 2GDW PDB 'Solution structure of the B. brevis TycC3-PCP in A/H-state' unspecified 2GE1 PDB 'Protein complex of A-state TycC3-apo-PCP with the PPtase Sfp (model)' unspecified 1DNY PDB 'Solution structure of PCP, a prototype for the peptidyl carrier domains of modular peptide snthetases' unspecified 19479 BMRB . unspecified 4MRT PDB 'Crystal structure of the same PCP in Complex with Sfp' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MD9 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-09-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tufar, P.' 1 'Rahighi, S.' 2 'Kraas, F.I.' 3 'Kirchner, D.K.' 4 'Loehr, F.' 5 'Henrich, E.' 6 'Koepke, J.' 7 'Dikic, I.' 8 'Guentert, P.' 9 'Marahiel, M.A.' 10 'Doetsch, V.' 11 # _citation.id primary _citation.title 'Crystal Structure of a PCP/Sfp Complex Reveals the Structural Basis for Carrier Protein Posttranslational Modification.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 21 _citation.page_first 552 _citation.page_last 562 _citation.year 2014 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24704508 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2014.02.014 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tufar, P.' 1 ? primary 'Rahighi, S.' 2 ? primary 'Kraas, F.I.' 3 ? primary 'Kirchner, D.K.' 4 ? primary 'Lohr, F.' 5 ? primary 'Henrich, E.' 6 ? primary 'Kopke, J.' 7 ? primary 'Dikic, I.' 8 ? primary 'Guntert, P.' 9 ? primary 'Marahiel, M.A.' 10 ? primary 'Dotsch, V.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Tyrocidine synthase 3' _entity.formula_weight 9972.424 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation S45A _entity.pdbx_fragment 'Third PCP domain of TycC (UNP Residues 3032-3113)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Tyrocidine synthase III, ATP-dependent asparagine adenylase, AsnA, Asparagine activase, ATP-dependent glutamine adenylase, GlnA, Glutamine activase, ATP-dependent tyrosine adenylase, TyrA, Tyrosine activase, ATP-dependent valine adenylase, ValA, Valine activase, ATP-dependent ornithine adenylase, OrnA, Ornithine activase, ATP-dependent leucine adenylase, LeuA, Leucine activase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PVTEAQYVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHALKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYV ATRSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;PVTEAQYVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHALKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYV ATRSHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 VAL n 1 3 THR n 1 4 GLU n 1 5 ALA n 1 6 GLN n 1 7 TYR n 1 8 VAL n 1 9 ALA n 1 10 PRO n 1 11 THR n 1 12 ASN n 1 13 ALA n 1 14 VAL n 1 15 GLU n 1 16 SER n 1 17 LYS n 1 18 LEU n 1 19 ALA n 1 20 GLU n 1 21 ILE n 1 22 TRP n 1 23 GLU n 1 24 ARG n 1 25 VAL n 1 26 LEU n 1 27 GLY n 1 28 VAL n 1 29 SER n 1 30 GLY n 1 31 ILE n 1 32 GLY n 1 33 ILE n 1 34 LEU n 1 35 ASP n 1 36 ASN n 1 37 PHE n 1 38 PHE n 1 39 GLN n 1 40 ILE n 1 41 GLY n 1 42 GLY n 1 43 HIS n 1 44 ALA n 1 45 LEU n 1 46 LYS n 1 47 ALA n 1 48 MET n 1 49 ALA n 1 50 VAL n 1 51 ALA n 1 52 ALA n 1 53 GLN n 1 54 VAL n 1 55 HIS n 1 56 ARG n 1 57 GLU n 1 58 TYR n 1 59 GLN n 1 60 VAL n 1 61 GLU n 1 62 LEU n 1 63 PRO n 1 64 LEU n 1 65 LYS n 1 66 VAL n 1 67 LEU n 1 68 PHE n 1 69 ALA n 1 70 GLN n 1 71 PRO n 1 72 THR n 1 73 ILE n 1 74 LYS n 1 75 ALA n 1 76 LEU n 1 77 ALA n 1 78 GLN n 1 79 TYR n 1 80 VAL n 1 81 ALA n 1 82 THR n 1 83 ARG n 1 84 SER n 1 85 HIS n 1 86 HIS n 1 87 HIS n 1 88 HIS n 1 89 HIS n 1 90 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene tycC _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8185' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Brevibacillus parabrevis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 54914 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain M15 _entity_src_gen.pdbx_host_org_variant pREP4 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pQE70 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TYCC_BREPA _struct_ref.pdbx_db_accession O30409 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PVTEAQYVAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYV AT ; _struct_ref.pdbx_align_begin 3032 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MD9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 82 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O30409 _struct_ref_seq.db_align_beg 3032 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 3113 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 83 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MD9 ALA A 44 ? UNP O30409 SER 3075 'engineered mutation' 45 1 1 2MD9 ARG A 83 ? UNP O30409 ? ? 'cloning artifact' 84 2 1 2MD9 SER A 84 ? UNP O30409 ? ? 'cloning artifact' 85 3 1 2MD9 HIS A 85 ? UNP O30409 ? ? 'expression tag' 86 4 1 2MD9 HIS A 86 ? UNP O30409 ? ? 'expression tag' 87 5 1 2MD9 HIS A 87 ? UNP O30409 ? ? 'expression tag' 88 6 1 2MD9 HIS A 88 ? UNP O30409 ? ? 'expression tag' 89 7 1 2MD9 HIS A 89 ? UNP O30409 ? ? 'expression tag' 90 8 1 2MD9 HIS A 90 ? UNP O30409 ? ? 'expression tag' 91 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC aliphatic' 1 3 1 '2D 1H-13C HSQC aromatic' 1 4 1 '3D HNCACB' 1 5 1 '3D H(CCCO)NH-TOCSY' 1 6 1 '3D (H)C(CCO)NH-TOCSY' 1 7 1 '3D 1H-15N NOESY' 1 8 1 '3D 1H-13C NOESY aromatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.7 mM [U-100% 13C; U-100% 15N] PCP, 50 mM sodium phosphate, 0.15 mM DSS, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 900 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MD9 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MD9 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 3.63 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.13 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MD9 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Cornilescu, Delaglio and Bax' 'geometry optimization' TALOS ? 1 Goddard 'peak picking' Sparky 3.114 2 Goddard 'chemical shift assignment' Sparky 3.114 3 'Bruker Biospin' collection TopSpin 3.0 4 'Bruker Biospin' processing TopSpin 3.0 5 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.96 6 'Luginbuhl, Guntert, Billeter and Wuthrich' refinement OPALp 1.4 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MD9 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MD9 _struct.title 'Solution Structure of an Active Site Mutant Pepitdyl Carrier Protein' _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MD9 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'Protein, Carrier Protein, ligase' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 15 ? LEU A 26 ? GLU A 16 LEU A 27 1 ? 12 HELX_P HELX_P2 2 ALA A 44 ? GLU A 57 ? ALA A 45 GLU A 58 1 ? 14 HELX_P HELX_P3 3 LEU A 64 ? LEU A 67 ? LEU A 65 LEU A 68 1 ? 4 HELX_P HELX_P4 4 ILE A 73 ? ALA A 81 ? ILE A 74 ALA A 82 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2MD9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 2 2 PRO PRO A . n A 1 2 VAL 2 3 3 VAL VAL A . n A 1 3 THR 3 4 4 THR THR A . n A 1 4 GLU 4 5 5 GLU GLU A . n A 1 5 ALA 5 6 6 ALA ALA A . n A 1 6 GLN 6 7 7 GLN GLN A . n A 1 7 TYR 7 8 8 TYR TYR A . n A 1 8 VAL 8 9 9 VAL VAL A . n A 1 9 ALA 9 10 10 ALA ALA A . n A 1 10 PRO 10 11 11 PRO PRO A . n A 1 11 THR 11 12 12 THR THR A . n A 1 12 ASN 12 13 13 ASN ASN A . n A 1 13 ALA 13 14 14 ALA ALA A . n A 1 14 VAL 14 15 15 VAL VAL A . n A 1 15 GLU 15 16 16 GLU GLU A . n A 1 16 SER 16 17 17 SER SER A . n A 1 17 LYS 17 18 18 LYS LYS A . n A 1 18 LEU 18 19 19 LEU LEU A . n A 1 19 ALA 19 20 20 ALA ALA A . n A 1 20 GLU 20 21 21 GLU GLU A . n A 1 21 ILE 21 22 22 ILE ILE A . n A 1 22 TRP 22 23 23 TRP TRP A . n A 1 23 GLU 23 24 24 GLU GLU A . n A 1 24 ARG 24 25 25 ARG ARG A . n A 1 25 VAL 25 26 26 VAL VAL A . n A 1 26 LEU 26 27 27 LEU LEU A . n A 1 27 GLY 27 28 28 GLY GLY A . n A 1 28 VAL 28 29 29 VAL VAL A . n A 1 29 SER 29 30 30 SER SER A . n A 1 30 GLY 30 31 31 GLY GLY A . n A 1 31 ILE 31 32 32 ILE ILE A . n A 1 32 GLY 32 33 33 GLY GLY A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 LEU 34 35 35 LEU LEU A . n A 1 35 ASP 35 36 36 ASP ASP A . n A 1 36 ASN 36 37 37 ASN ASN A . n A 1 37 PHE 37 38 38 PHE PHE A . n A 1 38 PHE 38 39 39 PHE PHE A . n A 1 39 GLN 39 40 40 GLN GLN A . n A 1 40 ILE 40 41 41 ILE ILE A . n A 1 41 GLY 41 42 42 GLY GLY A . n A 1 42 GLY 42 43 43 GLY GLY A . n A 1 43 HIS 43 44 44 HIS HIS A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 LEU 45 46 46 LEU LEU A . n A 1 46 LYS 46 47 47 LYS LYS A . n A 1 47 ALA 47 48 48 ALA ALA A . n A 1 48 MET 48 49 49 MET MET A . n A 1 49 ALA 49 50 50 ALA ALA A . n A 1 50 VAL 50 51 51 VAL VAL A . n A 1 51 ALA 51 52 52 ALA ALA A . n A 1 52 ALA 52 53 53 ALA ALA A . n A 1 53 GLN 53 54 54 GLN GLN A . n A 1 54 VAL 54 55 55 VAL VAL A . n A 1 55 HIS 55 56 56 HIS HIS A . n A 1 56 ARG 56 57 57 ARG ARG A . n A 1 57 GLU 57 58 58 GLU GLU A . n A 1 58 TYR 58 59 59 TYR TYR A . n A 1 59 GLN 59 60 60 GLN GLN A . n A 1 60 VAL 60 61 61 VAL VAL A . n A 1 61 GLU 61 62 62 GLU GLU A . n A 1 62 LEU 62 63 63 LEU LEU A . n A 1 63 PRO 63 64 64 PRO PRO A . n A 1 64 LEU 64 65 65 LEU LEU A . n A 1 65 LYS 65 66 66 LYS LYS A . n A 1 66 VAL 66 67 67 VAL VAL A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 PHE 68 69 69 PHE PHE A . n A 1 69 ALA 69 70 70 ALA ALA A . n A 1 70 GLN 70 71 71 GLN GLN A . n A 1 71 PRO 71 72 72 PRO PRO A . n A 1 72 THR 72 73 73 THR THR A . n A 1 73 ILE 73 74 74 ILE ILE A . n A 1 74 LYS 74 75 75 LYS LYS A . n A 1 75 ALA 75 76 76 ALA ALA A . n A 1 76 LEU 76 77 77 LEU LEU A . n A 1 77 ALA 77 78 78 ALA ALA A . n A 1 78 GLN 78 79 79 GLN GLN A . n A 1 79 TYR 79 80 80 TYR TYR A . n A 1 80 VAL 80 81 81 VAL VAL A . n A 1 81 ALA 81 82 82 ALA ALA A . n A 1 82 THR 82 83 83 THR THR A . n A 1 83 ARG 83 84 84 ARG ARG A . n A 1 84 SER 84 85 85 SER SER A . n A 1 85 HIS 85 86 86 HIS HIS A . n A 1 86 HIS 86 87 87 HIS HIS A . n A 1 87 HIS 87 88 88 HIS HIS A . n A 1 88 HIS 88 89 89 HIS HIS A . n A 1 89 HIS 89 90 90 HIS HIS A . n A 1 90 HIS 90 91 91 HIS HIS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-23 2 'Structure model' 1 1 2014-05-14 3 'Structure model' 1 2 2017-11-29 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Derived calculations' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' struct_conf 2 3 'Structure model' struct_conf_type 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_nmr_software 6 4 'Structure model' pdbx_nmr_spectrometer 7 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' 6 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.0145 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0.0005 _pdbx_nmr_ensemble_rms.entry_id 2MD9 _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id PCP-1 0.7 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium phosphate-2' 50 ? mM ? 1 DSS-3 0.15 ? mM ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MD9 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1419 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 243 _pdbx_nmr_constraints.NOE_long_range_total_count 301 _pdbx_nmr_constraints.NOE_medium_range_total_count 457 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 418 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 70 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 70 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 4 CA A PRO 2 ? ? N A PRO 2 ? ? CD A PRO 2 ? ? 102.39 111.50 -9.11 1.40 N 2 13 NE A ARG 84 ? ? CZ A ARG 84 ? ? NH1 A ARG 84 ? ? 123.78 120.30 3.48 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 3 ? ? -158.29 -11.78 2 2 HIS A 87 ? ? -57.75 92.79 3 3 VAL A 3 ? ? -76.18 -169.04 4 3 ILE A 41 ? ? -75.86 29.64 5 3 HIS A 90 ? ? -100.67 67.63 6 5 GLU A 5 ? ? 56.29 7.75 7 5 TYR A 8 ? ? -38.77 131.66 8 5 HIS A 87 ? ? -128.55 -160.13 9 5 HIS A 88 ? ? -119.36 -74.96 10 6 HIS A 88 ? ? 41.37 72.01 11 7 GLU A 5 ? ? 59.26 13.90 12 8 VAL A 3 ? ? -49.76 161.89 13 8 SER A 85 ? ? -67.61 4.30 14 10 HIS A 89 ? ? -154.16 -69.12 15 11 GLU A 5 ? ? 55.26 10.60 16 11 SER A 85 ? ? -83.81 34.93 17 11 HIS A 87 ? ? -150.21 -34.26 18 12 GLU A 5 ? ? -65.50 1.48 19 12 HIS A 90 ? ? -76.20 32.43 20 13 LEU A 63 ? ? -116.19 79.67 21 14 SER A 85 ? ? -83.10 38.73 22 17 GLU A 5 ? ? -64.88 4.39 23 17 SER A 85 ? ? -77.94 36.49 24 18 VAL A 3 ? ? 58.05 75.45 25 18 ILE A 41 ? ? -78.46 29.36 26 18 LEU A 63 ? ? -114.76 78.71 27 18 HIS A 88 ? ? -140.26 30.41 28 19 HIS A 88 ? ? -59.42 105.30 29 19 HIS A 90 ? ? -140.18 -15.44 30 20 HIS A 89 ? ? -74.79 46.01 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 8 TYR A 59 ? ? 0.101 'SIDE CHAIN' 2 9 ARG A 84 ? ? 0.086 'SIDE CHAIN' #