HEADER MEMBRANE PROTEIN 11-SEP-13 2MDK TITLE NMR SOLUTION STRUCTURE OF MSP-P56S DOMAIN/VAPB IN DPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN B/C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-125; COMPND 5 SYNONYM: VAMP-B/VAMP-C, VAMP-ASSOCIATED PROTEIN B/C, VAP-B/VAP-C; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-4T-1 KEYWDS MSP-P56S DOMAIN, VAPB, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.QIN,L.LIM,J.SONG REVDAT 1 30-OCT-13 2MDK 0 JRNL AUTH H.QIN,L.LIM,J.SONG JRNL TITL MSP-P56S DOMAIN, VAPB IN DPC JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-13. REMARK 100 THE RCSB ID CODE IS RCSB103507. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM DPC-1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY; 3D HCCH-TOCSY; REMARK 210 3D HBHA(CO)NH; 3D HN(CO)CA; 3D REMARK 210 HNCACB; 3D HNCO; 3D C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 60 H ALA A 63 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 89.72 -57.62 REMARK 500 1 SER A 9 73.77 -64.50 REMARK 500 1 PRO A 12 92.23 -60.99 REMARK 500 1 GLU A 15 101.14 66.59 REMARK 500 1 LEU A 16 111.05 156.51 REMARK 500 1 LYS A 17 -80.75 59.02 REMARK 500 1 PHE A 18 -49.72 -174.62 REMARK 500 1 ASN A 34 107.04 -54.71 REMARK 500 1 ASN A 39 160.94 74.76 REMARK 500 1 CYS A 41 -170.79 -178.20 REMARK 500 1 VAL A 44 -64.14 -127.29 REMARK 500 1 LYS A 45 -80.44 153.99 REMARK 500 1 CYS A 53 119.97 110.98 REMARK 500 1 VAL A 54 106.32 -45.64 REMARK 500 1 SER A 66 22.98 -79.72 REMARK 500 1 ASN A 68 -105.53 168.49 REMARK 500 1 LEU A 73 -68.13 -96.97 REMARK 500 1 ASN A 81 52.13 162.98 REMARK 500 1 LYS A 85 90.61 37.66 REMARK 500 1 LYS A 87 133.36 177.80 REMARK 500 1 ALA A 95 -67.31 159.65 REMARK 500 1 PRO A 96 79.25 -20.19 REMARK 500 1 ALA A 109 -157.32 76.13 REMARK 500 2 ALA A 2 76.45 -103.70 REMARK 500 2 LYS A 3 64.12 38.68 REMARK 500 2 SER A 9 23.11 42.42 REMARK 500 2 HIS A 14 153.27 57.86 REMARK 500 2 LEU A 16 -101.05 -57.46 REMARK 500 2 PHE A 18 -84.24 69.71 REMARK 500 2 ARG A 19 89.79 -57.66 REMARK 500 2 LEU A 32 56.72 -69.30 REMARK 500 2 ARG A 38 91.61 29.90 REMARK 500 2 ASN A 39 -69.44 -154.50 REMARK 500 2 VAL A 40 -67.93 -121.64 REMARK 500 2 PHE A 42 -39.99 -159.84 REMARK 500 2 LYS A 43 75.65 -64.54 REMARK 500 2 VAL A 44 39.03 39.95 REMARK 500 2 LYS A 45 -80.54 -104.75 REMARK 500 2 THR A 47 175.67 52.07 REMARK 500 2 ARG A 50 -66.10 -98.72 REMARK 500 2 ARG A 51 -63.35 -168.37 REMARK 500 2 CYS A 53 -41.85 171.81 REMARK 500 2 ILE A 60 -63.45 71.69 REMARK 500 2 SER A 66 61.40 -107.68 REMARK 500 2 LEU A 73 -68.01 -172.92 REMARK 500 2 GLN A 74 104.57 -48.34 REMARK 500 2 PHE A 76 -65.84 67.10 REMARK 500 2 ASP A 77 46.76 80.32 REMARK 500 2 TYR A 78 78.58 38.79 REMARK 500 2 PRO A 80 64.05 -66.78 REMARK 500 REMARK 500 THIS ENTRY HAS 303 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19489 RELATED DB: BMRB DBREF 2MDK A 1 125 UNP O95292 VAPB_HUMAN 1 125 SEQADV 2MDK SER A 56 UNP O95292 PRO 56 ENGINEERED MUTATION SEQRES 1 A 125 MET ALA LYS VAL GLU GLN VAL LEU SER LEU GLU PRO GLN SEQRES 2 A 125 HIS GLU LEU LYS PHE ARG GLY PRO PHE THR ASP VAL VAL SEQRES 3 A 125 THR THR ASN LEU LYS LEU GLY ASN PRO THR ASP ARG ASN SEQRES 4 A 125 VAL CYS PHE LYS VAL LYS THR THR ALA PRO ARG ARG TYR SEQRES 5 A 125 CYS VAL ARG SER ASN SER GLY ILE ILE ASP ALA GLY ALA SEQRES 6 A 125 SER ILE ASN VAL SER VAL MET LEU GLN PRO PHE ASP TYR SEQRES 7 A 125 ASP PRO ASN GLU LYS SER LYS HIS LYS PHE MET VAL GLN SEQRES 8 A 125 SER MET PHE ALA PRO THR ASP THR SER ASP MET GLU ALA SEQRES 9 A 125 VAL TRP LYS GLU ALA LYS PRO GLU ASP LEU MET ASP SER SEQRES 10 A 125 LYS LEU ARG CYS VAL PHE GLU LEU HELIX 1 1 PRO A 21 LYS A 31 1 11 HELIX 2 2 MET A 89 MET A 93 5 5 HELIX 3 3 THR A 97 ALA A 109 1 13 HELIX 4 4 ALA A 109 LEU A 125 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1