data_2MDL # _entry.id 2MDL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MDL pdb_00002mdl 10.2210/pdb2mdl/pdb RCSB RCSB103508 ? ? BMRB 18363 ? 10.13018/BMR18363 WWPDB D_1000103508 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-17 2 'Structure model' 1 1 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_entry_details 5 2 'Structure model' pdbx_modification_feature 6 2 'Structure model' pdbx_nmr_software 7 2 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_nmr_software.name' 4 2 'Structure model' '_pdbx_nmr_spectrometer.model' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2014-09-17 _pdbx_database_PDB_obs_spr.pdb_id 2MDL _pdbx_database_PDB_obs_spr.replace_pdb_id 2LRF _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MDL _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-09-11 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 18363 _pdbx_database_related.db_name BMRB _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sharma, S.' 1 'Barnwal, R.' 2 'Yedery, R.' 3 'Reddy, K.' 4 # _citation.id primary _citation.title 'NMR assignments of Scylla Serrata anti lipopolysaccharide Factor-24 (SsALF-24)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sharma, S.' 1 ? primary 'Barnwal, R.' 2 ? primary 'Yedery, R.' 3 ? primary 'Reddy, K.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Anti-lipopolysaccharide factor' _entity.formula_weight 3116.794 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 54-77' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name SsALF # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TCHIRRKPKFRKFKLYHEGKFWCP _entity_poly.pdbx_seq_one_letter_code_can TCHIRRKPKFRKFKLYHEGKFWCP _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 CYS n 1 3 HIS n 1 4 ILE n 1 5 ARG n 1 6 ARG n 1 7 LYS n 1 8 PRO n 1 9 LYS n 1 10 PHE n 1 11 ARG n 1 12 LYS n 1 13 PHE n 1 14 LYS n 1 15 LEU n 1 16 TYR n 1 17 HIS n 1 18 GLU n 1 19 GLY n 1 20 LYS n 1 21 PHE n 1 22 TRP n 1 23 CYS n 1 24 PRO n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Scylla serrata' _pdbx_entity_src_syn.organism_common_name 'Indo-Pacific swamp crab, Samoan crab, mud crab' _pdbx_entity_src_syn.ncbi_taxonomy_id 6761 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 CYS 2 2 2 CYS CYS A . n A 1 3 HIS 3 3 3 HIS HIS A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 TRP 22 22 22 TRP TRP A . n A 1 23 CYS 23 23 23 CYS CYS A . n A 1 24 PRO 24 24 24 PRO PRO A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MDL _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MDL _struct.title 'Structure and NMR assignments of Scylla Serrata anti lipopolysaccharide Factor-24 (SsALF-24)' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MDL _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'antimicrobial, ANTIMICROBIAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ALPS_SCYSE _struct_ref.pdbx_db_accession B5TTX7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TCHIRRKPKFRKFKLYHEGKFWCP _struct_ref.pdbx_align_begin 54 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MDL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 24 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B5TTX7 _struct_ref_seq.db_align_beg 54 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 77 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 2 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 23 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 2 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 23 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.059 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id CYS _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 2 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id CYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 23 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id CYS _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 2 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id CYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 23 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom SG _pdbx_modification_feature.modified_residue_id_linking_atom SG _pdbx_modification_feature.modified_residue_id . _pdbx_modification_feature.ref_pcm_id . _pdbx_modification_feature.ref_comp_id . _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Disulfide bridge' # _pdbx_entry_details.entry_id 2MDL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 12 ? ? -81.38 -74.08 2 1 TYR A 16 ? ? -55.77 179.88 3 1 PHE A 21 ? ? -178.40 108.36 4 1 CYS A 23 ? ? -176.61 99.46 5 2 TYR A 16 ? ? -56.92 -177.60 6 2 PHE A 21 ? ? -178.32 108.37 7 2 CYS A 23 ? ? -178.08 99.46 8 3 LYS A 12 ? ? -65.81 -74.69 9 3 TYR A 16 ? ? -56.58 -178.28 10 3 PHE A 21 ? ? -179.16 108.17 11 3 CYS A 23 ? ? -177.43 99.26 12 4 ILE A 4 ? ? -176.28 129.34 13 4 ARG A 6 ? ? -57.68 102.76 14 4 TYR A 16 ? ? -56.99 -177.50 15 4 PHE A 21 ? ? -178.33 107.69 16 4 CYS A 23 ? ? -178.13 99.60 17 5 ILE A 4 ? ? -176.62 129.26 18 5 ARG A 6 ? ? -56.22 102.98 19 5 LYS A 12 ? ? -77.76 -74.59 20 5 TYR A 16 ? ? -56.05 -179.71 21 5 PHE A 21 ? ? -178.35 108.03 22 5 CYS A 23 ? ? -177.59 99.44 23 6 LYS A 9 ? ? -117.43 -74.68 24 6 LYS A 12 ? ? -66.45 -71.35 25 6 TYR A 16 ? ? -56.64 -178.01 26 6 PHE A 21 ? ? -178.36 108.08 27 6 CYS A 23 ? ? -178.19 99.54 28 7 ILE A 4 ? ? -175.39 144.75 29 7 ARG A 6 ? ? -56.48 103.18 30 7 LYS A 9 ? ? -147.60 -69.76 31 7 LYS A 12 ? ? -75.30 -74.33 32 7 TYR A 16 ? ? -55.83 179.63 33 7 PHE A 21 ? ? -179.09 107.57 34 7 CYS A 23 ? ? -178.56 98.96 35 8 ARG A 5 ? ? -153.08 -48.81 36 8 TYR A 16 ? ? -56.44 -178.65 37 8 LYS A 20 ? ? -65.36 91.06 38 8 PHE A 21 ? ? -178.22 107.95 39 8 CYS A 23 ? ? -176.41 99.61 40 9 CYS A 2 ? ? -118.38 65.02 41 9 ILE A 4 ? ? -175.93 140.73 42 9 ARG A 6 ? ? -54.40 102.79 43 9 LYS A 9 ? ? -132.45 -68.25 44 9 TYR A 16 ? ? -54.16 176.19 45 9 PHE A 21 ? ? -179.87 108.21 46 9 CYS A 23 ? ? -177.66 99.66 47 10 LYS A 9 ? ? -130.19 -39.64 48 10 PHE A 10 ? ? -160.79 110.69 49 10 LYS A 12 ? ? -56.84 -74.50 50 10 TYR A 16 ? ? -56.81 -177.93 51 10 LYS A 20 ? ? -65.25 91.20 52 10 PHE A 21 ? ? -172.88 104.65 53 10 CYS A 23 ? ? -178.32 99.47 54 11 ILE A 4 ? ? -175.31 147.05 55 11 TYR A 16 ? ? -55.91 -179.94 56 11 PHE A 21 ? ? -177.57 107.76 57 11 CYS A 23 ? ? -178.86 99.51 58 12 ILE A 4 ? ? -176.15 136.08 59 12 ARG A 6 ? ? -53.93 102.97 60 12 LYS A 12 ? ? -101.94 -74.64 61 12 TYR A 16 ? ? -56.03 -179.72 62 12 PHE A 21 ? ? -178.90 106.44 63 12 CYS A 23 ? ? -176.76 99.35 64 13 ARG A 5 ? ? -158.19 -49.28 65 13 TYR A 16 ? ? -57.04 -177.63 66 13 LYS A 20 ? ? -65.15 91.20 67 13 PHE A 21 ? ? -171.69 104.54 68 13 CYS A 23 ? ? -177.52 99.64 69 14 LYS A 9 ? ? -138.32 -48.02 70 14 LYS A 12 ? ? -67.75 -74.45 71 14 TYR A 16 ? ? -57.00 -177.34 72 14 PHE A 21 ? ? -179.15 108.88 73 14 CYS A 23 ? ? -179.58 99.28 74 15 LYS A 9 ? ? -132.03 -61.47 75 15 LYS A 12 ? ? -98.21 -74.60 76 15 TYR A 16 ? ? -56.84 -177.72 77 15 PHE A 21 ? ? -179.29 106.31 78 15 CYS A 23 ? ? -179.54 99.29 79 16 LYS A 12 ? ? -80.72 -74.06 80 16 TYR A 16 ? ? -57.36 -176.60 81 16 LYS A 20 ? ? -65.22 91.05 82 16 PHE A 21 ? ? -172.21 104.44 83 16 CYS A 23 ? ? -179.63 99.45 84 17 CYS A 2 ? ? -119.98 57.54 85 17 ILE A 4 ? ? -176.26 131.82 86 17 ARG A 6 ? ? -53.23 102.40 87 17 LYS A 9 ? ? -134.44 -41.84 88 17 LYS A 12 ? ? -97.23 -74.67 89 17 TYR A 16 ? ? -55.76 179.40 90 17 PHE A 21 ? ? -179.01 107.80 91 17 CYS A 23 ? ? -179.51 99.19 92 18 ILE A 4 ? ? -176.08 131.72 93 18 ARG A 6 ? ? -55.56 101.94 94 18 LYS A 9 ? ? -126.76 -71.66 95 18 LYS A 12 ? ? -99.94 -74.64 96 18 TYR A 16 ? ? -56.75 -177.89 97 18 PHE A 21 ? ? -179.39 105.99 98 18 CYS A 23 ? ? -177.22 99.31 99 19 ILE A 4 ? ? -172.61 135.69 100 19 LYS A 9 ? ? -139.46 -74.47 101 19 TYR A 16 ? ? -55.34 178.63 102 19 PHE A 21 ? ? -179.74 102.72 103 19 CYS A 23 ? ? -179.39 99.34 104 20 ILE A 4 ? ? -177.23 124.65 105 20 TYR A 16 ? ? -57.06 -177.21 106 20 PHE A 21 ? ? -178.90 108.51 107 20 CYS A 23 ? ? -176.04 99.44 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MDL _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MDL _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '0.5 mM Scylla Serrata anti lipopolysaccharide Factor-1, 93% H2O/7% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '93% H2O/7% D2O' # _pdbx_nmr_exptl_sample.component 'Scylla Serrata anti lipopolysaccharide Factor-1' _pdbx_nmr_exptl_sample.concentration 0.5 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling ? _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D DQF-COSY' 1 4 1 '2D 1H-1H COSY' 1 5 1 '2D 1H-1H NOESY' 1 6 1 '2D 1H-1H TOCSY' # _pdbx_nmr_refine.entry_id 2MDL _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Bruker Biospin' collection TopSpin 1 ? 'Bruker Biospin' processing TopSpin 2 ? 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3 ? 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 4 ? CCPN 'chemical shift assignment' CCPNMR 5 ? CCPN 'data analysis' CCPNMR 6 ? CCPN 'peak picking' CCPNMR 7 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 CYS N N N N 28 CYS CA C N R 29 CYS C C N N 30 CYS O O N N 31 CYS CB C N N 32 CYS SG S N N 33 CYS OXT O N N 34 CYS H H N N 35 CYS H2 H N N 36 CYS HA H N N 37 CYS HB2 H N N 38 CYS HB3 H N N 39 CYS HG H N N 40 CYS HXT H N N 41 GLU N N N N 42 GLU CA C N S 43 GLU C C N N 44 GLU O O N N 45 GLU CB C N N 46 GLU CG C N N 47 GLU CD C N N 48 GLU OE1 O N N 49 GLU OE2 O N N 50 GLU OXT O N N 51 GLU H H N N 52 GLU H2 H N N 53 GLU HA H N N 54 GLU HB2 H N N 55 GLU HB3 H N N 56 GLU HG2 H N N 57 GLU HG3 H N N 58 GLU HE2 H N N 59 GLU HXT H N N 60 GLY N N N N 61 GLY CA C N N 62 GLY C C N N 63 GLY O O N N 64 GLY OXT O N N 65 GLY H H N N 66 GLY H2 H N N 67 GLY HA2 H N N 68 GLY HA3 H N N 69 GLY HXT H N N 70 HIS N N N N 71 HIS CA C N S 72 HIS C C N N 73 HIS O O N N 74 HIS CB C N N 75 HIS CG C Y N 76 HIS ND1 N Y N 77 HIS CD2 C Y N 78 HIS CE1 C Y N 79 HIS NE2 N Y N 80 HIS OXT O N N 81 HIS H H N N 82 HIS H2 H N N 83 HIS HA H N N 84 HIS HB2 H N N 85 HIS HB3 H N N 86 HIS HD1 H N N 87 HIS HD2 H N N 88 HIS HE1 H N N 89 HIS HE2 H N N 90 HIS HXT H N N 91 ILE N N N N 92 ILE CA C N S 93 ILE C C N N 94 ILE O O N N 95 ILE CB C N S 96 ILE CG1 C N N 97 ILE CG2 C N N 98 ILE CD1 C N N 99 ILE OXT O N N 100 ILE H H N N 101 ILE H2 H N N 102 ILE HA H N N 103 ILE HB H N N 104 ILE HG12 H N N 105 ILE HG13 H N N 106 ILE HG21 H N N 107 ILE HG22 H N N 108 ILE HG23 H N N 109 ILE HD11 H N N 110 ILE HD12 H N N 111 ILE HD13 H N N 112 ILE HXT H N N 113 LEU N N N N 114 LEU CA C N S 115 LEU C C N N 116 LEU O O N N 117 LEU CB C N N 118 LEU CG C N N 119 LEU CD1 C N N 120 LEU CD2 C N N 121 LEU OXT O N N 122 LEU H H N N 123 LEU H2 H N N 124 LEU HA H N N 125 LEU HB2 H N N 126 LEU HB3 H N N 127 LEU HG H N N 128 LEU HD11 H N N 129 LEU HD12 H N N 130 LEU HD13 H N N 131 LEU HD21 H N N 132 LEU HD22 H N N 133 LEU HD23 H N N 134 LEU HXT H N N 135 LYS N N N N 136 LYS CA C N S 137 LYS C C N N 138 LYS O O N N 139 LYS CB C N N 140 LYS CG C N N 141 LYS CD C N N 142 LYS CE C N N 143 LYS NZ N N N 144 LYS OXT O N N 145 LYS H H N N 146 LYS H2 H N N 147 LYS HA H N N 148 LYS HB2 H N N 149 LYS HB3 H N N 150 LYS HG2 H N N 151 LYS HG3 H N N 152 LYS HD2 H N N 153 LYS HD3 H N N 154 LYS HE2 H N N 155 LYS HE3 H N N 156 LYS HZ1 H N N 157 LYS HZ2 H N N 158 LYS HZ3 H N N 159 LYS HXT H N N 160 PHE N N N N 161 PHE CA C N S 162 PHE C C N N 163 PHE O O N N 164 PHE CB C N N 165 PHE CG C Y N 166 PHE CD1 C Y N 167 PHE CD2 C Y N 168 PHE CE1 C Y N 169 PHE CE2 C Y N 170 PHE CZ C Y N 171 PHE OXT O N N 172 PHE H H N N 173 PHE H2 H N N 174 PHE HA H N N 175 PHE HB2 H N N 176 PHE HB3 H N N 177 PHE HD1 H N N 178 PHE HD2 H N N 179 PHE HE1 H N N 180 PHE HE2 H N N 181 PHE HZ H N N 182 PHE HXT H N N 183 PRO N N N N 184 PRO CA C N S 185 PRO C C N N 186 PRO O O N N 187 PRO CB C N N 188 PRO CG C N N 189 PRO CD C N N 190 PRO OXT O N N 191 PRO H H N N 192 PRO HA H N N 193 PRO HB2 H N N 194 PRO HB3 H N N 195 PRO HG2 H N N 196 PRO HG3 H N N 197 PRO HD2 H N N 198 PRO HD3 H N N 199 PRO HXT H N N 200 THR N N N N 201 THR CA C N S 202 THR C C N N 203 THR O O N N 204 THR CB C N R 205 THR OG1 O N N 206 THR CG2 C N N 207 THR OXT O N N 208 THR H H N N 209 THR H2 H N N 210 THR HA H N N 211 THR HB H N N 212 THR HG1 H N N 213 THR HG21 H N N 214 THR HG22 H N N 215 THR HG23 H N N 216 THR HXT H N N 217 TRP N N N N 218 TRP CA C N S 219 TRP C C N N 220 TRP O O N N 221 TRP CB C N N 222 TRP CG C Y N 223 TRP CD1 C Y N 224 TRP CD2 C Y N 225 TRP NE1 N Y N 226 TRP CE2 C Y N 227 TRP CE3 C Y N 228 TRP CZ2 C Y N 229 TRP CZ3 C Y N 230 TRP CH2 C Y N 231 TRP OXT O N N 232 TRP H H N N 233 TRP H2 H N N 234 TRP HA H N N 235 TRP HB2 H N N 236 TRP HB3 H N N 237 TRP HD1 H N N 238 TRP HE1 H N N 239 TRP HE3 H N N 240 TRP HZ2 H N N 241 TRP HZ3 H N N 242 TRP HH2 H N N 243 TRP HXT H N N 244 TYR N N N N 245 TYR CA C N S 246 TYR C C N N 247 TYR O O N N 248 TYR CB C N N 249 TYR CG C Y N 250 TYR CD1 C Y N 251 TYR CD2 C Y N 252 TYR CE1 C Y N 253 TYR CE2 C Y N 254 TYR CZ C Y N 255 TYR OH O N N 256 TYR OXT O N N 257 TYR H H N N 258 TYR H2 H N N 259 TYR HA H N N 260 TYR HB2 H N N 261 TYR HB3 H N N 262 TYR HD1 H N N 263 TYR HD2 H N N 264 TYR HE1 H N N 265 TYR HE2 H N N 266 TYR HH H N N 267 TYR HXT H N N 268 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 CYS N CA sing N N 27 CYS N H sing N N 28 CYS N H2 sing N N 29 CYS CA C sing N N 30 CYS CA CB sing N N 31 CYS CA HA sing N N 32 CYS C O doub N N 33 CYS C OXT sing N N 34 CYS CB SG sing N N 35 CYS CB HB2 sing N N 36 CYS CB HB3 sing N N 37 CYS SG HG sing N N 38 CYS OXT HXT sing N N 39 GLU N CA sing N N 40 GLU N H sing N N 41 GLU N H2 sing N N 42 GLU CA C sing N N 43 GLU CA CB sing N N 44 GLU CA HA sing N N 45 GLU C O doub N N 46 GLU C OXT sing N N 47 GLU CB CG sing N N 48 GLU CB HB2 sing N N 49 GLU CB HB3 sing N N 50 GLU CG CD sing N N 51 GLU CG HG2 sing N N 52 GLU CG HG3 sing N N 53 GLU CD OE1 doub N N 54 GLU CD OE2 sing N N 55 GLU OE2 HE2 sing N N 56 GLU OXT HXT sing N N 57 GLY N CA sing N N 58 GLY N H sing N N 59 GLY N H2 sing N N 60 GLY CA C sing N N 61 GLY CA HA2 sing N N 62 GLY CA HA3 sing N N 63 GLY C O doub N N 64 GLY C OXT sing N N 65 GLY OXT HXT sing N N 66 HIS N CA sing N N 67 HIS N H sing N N 68 HIS N H2 sing N N 69 HIS CA C sing N N 70 HIS CA CB sing N N 71 HIS CA HA sing N N 72 HIS C O doub N N 73 HIS C OXT sing N N 74 HIS CB CG sing N N 75 HIS CB HB2 sing N N 76 HIS CB HB3 sing N N 77 HIS CG ND1 sing Y N 78 HIS CG CD2 doub Y N 79 HIS ND1 CE1 doub Y N 80 HIS ND1 HD1 sing N N 81 HIS CD2 NE2 sing Y N 82 HIS CD2 HD2 sing N N 83 HIS CE1 NE2 sing Y N 84 HIS CE1 HE1 sing N N 85 HIS NE2 HE2 sing N N 86 HIS OXT HXT sing N N 87 ILE N CA sing N N 88 ILE N H sing N N 89 ILE N H2 sing N N 90 ILE CA C sing N N 91 ILE CA CB sing N N 92 ILE CA HA sing N N 93 ILE C O doub N N 94 ILE C OXT sing N N 95 ILE CB CG1 sing N N 96 ILE CB CG2 sing N N 97 ILE CB HB sing N N 98 ILE CG1 CD1 sing N N 99 ILE CG1 HG12 sing N N 100 ILE CG1 HG13 sing N N 101 ILE CG2 HG21 sing N N 102 ILE CG2 HG22 sing N N 103 ILE CG2 HG23 sing N N 104 ILE CD1 HD11 sing N N 105 ILE CD1 HD12 sing N N 106 ILE CD1 HD13 sing N N 107 ILE OXT HXT sing N N 108 LEU N CA sing N N 109 LEU N H sing N N 110 LEU N H2 sing N N 111 LEU CA C sing N N 112 LEU CA CB sing N N 113 LEU CA HA sing N N 114 LEU C O doub N N 115 LEU C OXT sing N N 116 LEU CB CG sing N N 117 LEU CB HB2 sing N N 118 LEU CB HB3 sing N N 119 LEU CG CD1 sing N N 120 LEU CG CD2 sing N N 121 LEU CG HG sing N N 122 LEU CD1 HD11 sing N N 123 LEU CD1 HD12 sing N N 124 LEU CD1 HD13 sing N N 125 LEU CD2 HD21 sing N N 126 LEU CD2 HD22 sing N N 127 LEU CD2 HD23 sing N N 128 LEU OXT HXT sing N N 129 LYS N CA sing N N 130 LYS N H sing N N 131 LYS N H2 sing N N 132 LYS CA C sing N N 133 LYS CA CB sing N N 134 LYS CA HA sing N N 135 LYS C O doub N N 136 LYS C OXT sing N N 137 LYS CB CG sing N N 138 LYS CB HB2 sing N N 139 LYS CB HB3 sing N N 140 LYS CG CD sing N N 141 LYS CG HG2 sing N N 142 LYS CG HG3 sing N N 143 LYS CD CE sing N N 144 LYS CD HD2 sing N N 145 LYS CD HD3 sing N N 146 LYS CE NZ sing N N 147 LYS CE HE2 sing N N 148 LYS CE HE3 sing N N 149 LYS NZ HZ1 sing N N 150 LYS NZ HZ2 sing N N 151 LYS NZ HZ3 sing N N 152 LYS OXT HXT sing N N 153 PHE N CA sing N N 154 PHE N H sing N N 155 PHE N H2 sing N N 156 PHE CA C sing N N 157 PHE CA CB sing N N 158 PHE CA HA sing N N 159 PHE C O doub N N 160 PHE C OXT sing N N 161 PHE CB CG sing N N 162 PHE CB HB2 sing N N 163 PHE CB HB3 sing N N 164 PHE CG CD1 doub Y N 165 PHE CG CD2 sing Y N 166 PHE CD1 CE1 sing Y N 167 PHE CD1 HD1 sing N N 168 PHE CD2 CE2 doub Y N 169 PHE CD2 HD2 sing N N 170 PHE CE1 CZ doub Y N 171 PHE CE1 HE1 sing N N 172 PHE CE2 CZ sing Y N 173 PHE CE2 HE2 sing N N 174 PHE CZ HZ sing N N 175 PHE OXT HXT sing N N 176 PRO N CA sing N N 177 PRO N CD sing N N 178 PRO N H sing N N 179 PRO CA C sing N N 180 PRO CA CB sing N N 181 PRO CA HA sing N N 182 PRO C O doub N N 183 PRO C OXT sing N N 184 PRO CB CG sing N N 185 PRO CB HB2 sing N N 186 PRO CB HB3 sing N N 187 PRO CG CD sing N N 188 PRO CG HG2 sing N N 189 PRO CG HG3 sing N N 190 PRO CD HD2 sing N N 191 PRO CD HD3 sing N N 192 PRO OXT HXT sing N N 193 THR N CA sing N N 194 THR N H sing N N 195 THR N H2 sing N N 196 THR CA C sing N N 197 THR CA CB sing N N 198 THR CA HA sing N N 199 THR C O doub N N 200 THR C OXT sing N N 201 THR CB OG1 sing N N 202 THR CB CG2 sing N N 203 THR CB HB sing N N 204 THR OG1 HG1 sing N N 205 THR CG2 HG21 sing N N 206 THR CG2 HG22 sing N N 207 THR CG2 HG23 sing N N 208 THR OXT HXT sing N N 209 TRP N CA sing N N 210 TRP N H sing N N 211 TRP N H2 sing N N 212 TRP CA C sing N N 213 TRP CA CB sing N N 214 TRP CA HA sing N N 215 TRP C O doub N N 216 TRP C OXT sing N N 217 TRP CB CG sing N N 218 TRP CB HB2 sing N N 219 TRP CB HB3 sing N N 220 TRP CG CD1 doub Y N 221 TRP CG CD2 sing Y N 222 TRP CD1 NE1 sing Y N 223 TRP CD1 HD1 sing N N 224 TRP CD2 CE2 doub Y N 225 TRP CD2 CE3 sing Y N 226 TRP NE1 CE2 sing Y N 227 TRP NE1 HE1 sing N N 228 TRP CE2 CZ2 sing Y N 229 TRP CE3 CZ3 doub Y N 230 TRP CE3 HE3 sing N N 231 TRP CZ2 CH2 doub Y N 232 TRP CZ2 HZ2 sing N N 233 TRP CZ3 CH2 sing Y N 234 TRP CZ3 HZ3 sing N N 235 TRP CH2 HH2 sing N N 236 TRP OXT HXT sing N N 237 TYR N CA sing N N 238 TYR N H sing N N 239 TYR N H2 sing N N 240 TYR CA C sing N N 241 TYR CA CB sing N N 242 TYR CA HA sing N N 243 TYR C O doub N N 244 TYR C OXT sing N N 245 TYR CB CG sing N N 246 TYR CB HB2 sing N N 247 TYR CB HB3 sing N N 248 TYR CG CD1 doub Y N 249 TYR CG CD2 sing Y N 250 TYR CD1 CE1 sing Y N 251 TYR CD1 HD1 sing N N 252 TYR CD2 CE2 doub Y N 253 TYR CD2 HD2 sing N N 254 TYR CE1 CZ doub Y N 255 TYR CE1 HE1 sing N N 256 TYR CE2 CZ sing Y N 257 TYR CE2 HE2 sing N N 258 TYR CZ OH sing N N 259 TYR OH HH sing N N 260 TYR OXT HXT sing N N 261 # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 800 Bruker AVANCE 2 'Bruker Avance' # _atom_sites.entry_id 2MDL _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_