HEADER ISOMERASE 18-SEP-13 2MDU TITLE CIRCULAR PERMUTANT OF THE WW DOMAIN WITH LOOP 1 EXCISED COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIN1 WW DOMAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS CIRCULAR PERMUTATION, MINIPROTEIN, DYNAMICS, FOLDING, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 22 AUTHOR B.L.KIER REVDAT 2 29-JAN-14 2MDU 1 JRNL REVDAT 1 15-JAN-14 2MDU 0 JRNL AUTH B.L.KIER,J.M.ANDERSON,N.H.ANDERSEN JRNL TITL CIRCULAR PERMUTATION OF A WW DOMAIN: FOLDING STILL OCCURS JRNL TITL 2 AFTER EXCISING THE TURN OF THE FOLDING-NUCLEATING HAIRPIN. JRNL REF J.AM.CHEM.SOC. V. 136 741 2014 JRNL REFN ISSN 0002-7863 JRNL PMID 24350581 JRNL DOI 10.1021/JA410824X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STANDARD LENNARD-JONES POTENTIAL REMARK 4 REMARK 4 2MDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-13. REMARK 100 THE RCSB ID CODE IS RCSB103516. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 280 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.11 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 0.5 MM REMARK 210 DSS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.2, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 22 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 17 H GLY A 19 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 11 PRO A 17 CD PRO A 17 N -0.104 REMARK 500 15 PRO A 17 CD PRO A 17 N -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 TRP A 2 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 9 ARG A 27 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 18 56.20 -67.35 REMARK 500 1 VAL A 21 -169.19 -124.60 REMARK 500 2 PHE A 3 -173.50 -179.77 REMARK 500 2 ARG A 12 140.54 -172.92 REMARK 500 2 LYS A 18 62.07 -64.67 REMARK 500 2 VAL A 21 -168.54 -126.63 REMARK 500 2 TRP A 28 42.99 -105.94 REMARK 500 3 ARG A 12 141.79 -172.57 REMARK 500 3 LYS A 18 55.91 -69.40 REMARK 500 4 GLN A 13 -176.48 -173.71 REMARK 500 4 LYS A 18 59.51 -66.23 REMARK 500 4 VAL A 21 -168.36 -129.61 REMARK 500 6 PHE A 3 -155.94 174.98 REMARK 500 6 ARG A 16 157.91 -47.75 REMARK 500 6 ARG A 27 83.95 179.41 REMARK 500 6 TRP A 28 -19.20 -39.57 REMARK 500 7 ARG A 12 142.81 -172.55 REMARK 500 7 LYS A 18 61.74 -64.71 REMARK 500 7 VAL A 21 -168.45 -127.87 REMARK 500 8 PHE A 3 167.36 174.59 REMARK 500 9 PRO A 17 145.98 -12.17 REMARK 500 9 LYS A 18 22.23 -77.50 REMARK 500 9 LYS A 22 86.54 55.46 REMARK 500 10 ARG A 12 140.73 -173.00 REMARK 500 10 LYS A 18 61.45 -65.55 REMARK 500 11 PHE A 3 174.53 178.91 REMARK 500 11 LYS A 11 42.50 -102.68 REMARK 500 11 ARG A 12 148.14 -35.76 REMARK 500 11 GLN A 13 -157.51 -155.07 REMARK 500 11 LEU A 20 36.75 -97.23 REMARK 500 12 PRO A 17 145.14 -24.84 REMARK 500 12 LYS A 18 30.68 -87.88 REMARK 500 12 VAL A 21 -43.06 -170.35 REMARK 500 13 LYS A 18 36.73 -98.52 REMARK 500 13 LEU A 20 90.86 81.28 REMARK 500 13 VAL A 21 -49.56 44.51 REMARK 500 13 GLU A 25 88.55 -153.01 REMARK 500 14 PHE A 3 -167.17 -160.93 REMARK 500 14 LYS A 11 46.42 -109.18 REMARK 500 14 ARG A 12 137.97 -32.30 REMARK 500 14 ARG A 16 65.08 -101.38 REMARK 500 15 PHE A 3 173.32 178.33 REMARK 500 15 LYS A 11 61.77 -114.23 REMARK 500 15 ARG A 12 136.89 -37.54 REMARK 500 15 PHE A 14 -25.58 -39.26 REMARK 500 15 GLU A 15 -176.63 -57.38 REMARK 500 15 LYS A 18 -12.19 99.70 REMARK 500 15 LEU A 20 41.40 -96.97 REMARK 500 16 PHE A 3 165.76 176.52 REMARK 500 17 PRO A 17 135.21 -35.49 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 9 PHE A 3 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PIN RELATED DB: PDB REMARK 900 RELATED ID: 2KCF RELATED DB: PDB REMARK 900 RELATED ID: 19503 RELATED DB: BMRB DBREF 2MDU A 1 29 PDB 2MDU 2MDU 1 29 SEQRES 1 A 29 ARG TRP PHE TYR PHE ASN ARG ILE THR GLY LYS ARG GLN SEQRES 2 A 29 PHE GLU ARG PRO LYS GLY LEU VAL LYS GLY TRP GLU LYS SEQRES 3 A 29 ARG TRP ASP SHEET 1 A 3 ARG A 12 GLN A 13 0 SHEET 2 A 3 TRP A 2 ASN A 6 -1 N TYR A 4 O GLN A 13 SHEET 3 A 3 TRP A 24 TRP A 28 -1 O ARG A 27 N PHE A 3 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1