HEADER MEMBRANE PROTEIN 19-SEP-13 2MDX TITLE SOLUTION STRUCTURE OF THE HUMAN WILD TYPE FAPP1-PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY A MEMBER 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-100; COMPND 5 SYNONYM: PH DOMAIN-CONTAINING FAMILY A MEMBER 3, COMPND 6 PHOSPHATIDYLINOSITOL-FOUR-PHOSPHATE ADAPTER PROTEIN 1, FAPP-1, COMPND 7 PHOSPHOINOSITOL 4-PHOSPHATE ADAPTER PROTEIN 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLEKHA3, FAPP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS PLECKSTRIN HOMOLOGY, PHOSPHOINOSITIDE, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.LENOIR,M.OVERDUIN REVDAT 2 01-MAY-24 2MDX 1 REMARK SEQADV REVDAT 1 24-SEP-14 2MDX 0 JRNL AUTH M.LENOIR,M.OVERDUIN JRNL TITL SOLUTION STRUCTURE OF THE HUMAN WILD TYPE FAPP1-PH DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 2.2, ARIA REMARK 3 AUTHORS : CCPN (CCPNMR ANALYSIS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STAGE OF THE CALCULATIONS IS REMARK 3 REFINED IN EXPLICIT WATER REMARK 4 REMARK 4 2MDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000103519. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 240 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM DTT, 20 MM TRIS, 100 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(CO)CA; 2D 1H-13C REMARK 210 HSQC ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 40 OD1 ASP A 42 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 -26.83 -176.88 REMARK 500 1 PRO A 6 85.84 -66.06 REMARK 500 1 TRP A 23 -9.19 73.84 REMARK 500 1 GLN A 24 102.32 -49.56 REMARK 500 1 LYS A 46 -58.69 -122.79 REMARK 500 1 LYS A 49 -34.66 75.29 REMARK 500 1 CYS A 57 -153.09 -128.69 REMARK 500 1 HIS A 62 -73.61 -145.37 REMARK 500 1 SER A 63 109.99 -16.56 REMARK 500 1 ASP A 65 -159.35 -166.54 REMARK 500 1 THR A 67 95.97 54.72 REMARK 500 1 HIS A 78 86.79 -177.62 REMARK 500 1 ASP A 105 -72.15 -111.10 REMARK 500 1 ARG A 107 99.03 -69.13 REMARK 500 2 ASN A 18 60.30 61.02 REMARK 500 2 TYR A 19 -63.29 72.10 REMARK 500 2 SER A 48 -34.00 74.04 REMARK 500 2 CYS A 57 -155.39 -131.64 REMARK 500 2 ALA A 64 33.93 -157.62 REMARK 500 2 ASP A 65 -29.40 -170.61 REMARK 500 2 ASN A 66 -11.95 83.29 REMARK 500 2 PRO A 74 117.86 -29.79 REMARK 500 2 HIS A 78 87.15 -175.47 REMARK 500 2 MET A 81 142.31 -170.53 REMARK 500 2 THR A 104 -81.83 60.87 REMARK 500 2 ASP A 105 -66.42 -121.41 REMARK 500 3 ASN A 18 -68.17 -163.47 REMARK 500 3 TYR A 19 -65.27 -152.76 REMARK 500 3 THR A 21 41.17 -97.87 REMARK 500 3 LYS A 46 55.56 -160.89 REMARK 500 3 LYS A 49 -25.07 71.26 REMARK 500 3 HIS A 62 -43.04 67.52 REMARK 500 3 SER A 63 -80.85 63.05 REMARK 500 3 ALA A 64 16.82 -153.45 REMARK 500 3 ASN A 66 -80.98 -84.00 REMARK 500 3 PRO A 74 -115.70 -14.60 REMARK 500 3 HIS A 78 88.71 178.67 REMARK 500 3 LEU A 103 -79.47 -83.77 REMARK 500 3 ASP A 105 -81.00 -166.16 REMARK 500 3 THR A 106 -90.57 -135.26 REMARK 500 4 TYR A 14 87.76 -67.37 REMARK 500 4 LEU A 20 -71.04 -73.14 REMARK 500 4 PRO A 25 109.04 -53.52 REMARK 500 4 LYS A 46 29.87 -152.18 REMARK 500 4 LYS A 49 -30.43 70.72 REMARK 500 4 CYS A 57 -149.73 -131.87 REMARK 500 4 ALA A 64 28.45 -147.38 REMARK 500 4 ASP A 65 -13.85 -172.68 REMARK 500 4 ASN A 66 -10.58 80.37 REMARK 500 4 GLU A 76 89.65 -150.42 REMARK 500 REMARK 500 THIS ENTRY HAS 115 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KCJ RELATED DB: PDB REMARK 900 RELATED ID: 3RCP RELATED DB: PDB REMARK 900 RELATED ID: 19508 RELATED DB: BMRB DBREF 2MDX A 9 108 UNP Q9HB20 PKHA3_HUMAN 1 100 SEQADV 2MDX GLY A 1 UNP Q9HB20 EXPRESSION TAG SEQADV 2MDX PRO A 2 UNP Q9HB20 EXPRESSION TAG SEQADV 2MDX LEU A 3 UNP Q9HB20 EXPRESSION TAG SEQADV 2MDX GLY A 4 UNP Q9HB20 EXPRESSION TAG SEQADV 2MDX SER A 5 UNP Q9HB20 EXPRESSION TAG SEQADV 2MDX PRO A 6 UNP Q9HB20 EXPRESSION TAG SEQADV 2MDX GLU A 7 UNP Q9HB20 EXPRESSION TAG SEQADV 2MDX PHE A 8 UNP Q9HB20 EXPRESSION TAG SEQRES 1 A 108 GLY PRO LEU GLY SER PRO GLU PHE MET GLU GLY VAL LEU SEQRES 2 A 108 TYR LYS TRP THR ASN TYR LEU THR GLY TRP GLN PRO ARG SEQRES 3 A 108 TRP PHE VAL LEU ASP ASN GLY ILE LEU SER TYR TYR ASP SEQRES 4 A 108 SER GLN ASP ASP VAL CYS LYS GLY SER LYS GLY SER ILE SEQRES 5 A 108 LYS MET ALA VAL CYS GLU ILE LYS VAL HIS SER ALA ASP SEQRES 6 A 108 ASN THR ARG MET GLU LEU ILE ILE PRO GLY GLU GLN HIS SEQRES 7 A 108 PHE TYR MET LYS ALA VAL ASN ALA ALA GLU ARG GLN ARG SEQRES 8 A 108 TRP LEU VAL ALA LEU GLY SER SER LYS ALA CYS LEU THR SEQRES 9 A 108 ASP THR ARG THR HELIX 1 1 ASP A 42 LYS A 46 5 5 HELIX 2 2 ASN A 85 LYS A 100 1 16 SHEET 1 A 7 SER A 51 LYS A 53 0 SHEET 2 A 7 ILE A 34 TYR A 38 -1 N LEU A 35 O ILE A 52 SHEET 3 A 7 GLN A 24 ASP A 31 -1 N ASP A 31 O ILE A 34 SHEET 4 A 7 PHE A 8 LYS A 15 -1 N MET A 9 O LEU A 30 SHEET 5 A 7 PHE A 79 ALA A 83 -1 O LYS A 82 N TYR A 14 SHEET 6 A 7 GLU A 70 ILE A 72 -1 N LEU A 71 O PHE A 79 SHEET 7 A 7 GLU A 58 LYS A 60 -1 N LYS A 60 O GLU A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1