data_2ME6 # _entry.id 2ME6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2ME6 RCSB RCSB103528 BMRB 19511 WWPDB D_1000103528 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19511 BMRB unspecified . JCSG-424577 TargetTrack unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2ME6 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-09-23 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Proudfoot, A.' 1 'Serrano, P.' 2 'Geralt, M.' 3 'Wuthrich, K.' 4 'Joint Center for Structural Genomics (JCSG)' 5 'Partnership for Stem Cell Biology (STEMCELL)' 6 # _citation.id primary _citation.title 'NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens in complex with the DNA sequence CGACTAATTAGTCG' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Proudfoot, A.' 1 primary 'Wuthrich, K.' 2 primary 'Serrano, P.' 3 primary 'Geralt, M.' 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Homeobox protein GBX-1' 8346.700 1 ? ? 'Homeobox DNA binding region, residues 256-325' ? 2 polymer syn ;DNA (5'-D(*CP*GP*AP*CP*TP*AP*AP*TP*TP*AP*GP*TP*CP*G)-3') ; 4279.804 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Gastrulation and brain-specific homeobox protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS SAPGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS A 'JCSG-424577 ' 2 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DC)(DT)(DA)(DA)(DT)(DT)(DA)(DG)(DT)(DC)(DG)' CGACTAATTAGTCG B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ALA n 1 3 PRO n 1 4 GLY n 1 5 GLY n 1 6 LYS n 1 7 SER n 1 8 ARG n 1 9 ARG n 1 10 ARG n 1 11 ARG n 1 12 THR n 1 13 ALA n 1 14 PHE n 1 15 THR n 1 16 SER n 1 17 GLU n 1 18 GLN n 1 19 LEU n 1 20 LEU n 1 21 GLU n 1 22 LEU n 1 23 GLU n 1 24 LYS n 1 25 GLU n 1 26 PHE n 1 27 HIS n 1 28 CYS n 1 29 LYS n 1 30 LYS n 1 31 TYR n 1 32 LEU n 1 33 SER n 1 34 LEU n 1 35 THR n 1 36 GLU n 1 37 ARG n 1 38 SER n 1 39 GLN n 1 40 ILE n 1 41 ALA n 1 42 HIS n 1 43 ALA n 1 44 LEU n 1 45 LYS n 1 46 LEU n 1 47 SER n 1 48 GLU n 1 49 VAL n 1 50 GLN n 1 51 VAL n 1 52 LYS n 1 53 ILE n 1 54 TRP n 1 55 PHE n 1 56 GLN n 1 57 ASN n 1 58 ARG n 1 59 ARG n 1 60 ALA n 1 61 LYS n 1 62 TRP n 1 63 LYS n 1 64 ARG n 1 65 ILE n 1 66 LYS n 1 67 ALA n 1 68 GLY n 1 69 ASN n 1 70 VAL n 1 71 SER n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DC n 2 5 DT n 2 6 DA n 2 7 DA n 2 8 DT n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GBX1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET46 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GBX1_HUMAN Q14549 1 APGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVS 256 ? 2 PDB 2ME6 2ME6 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ME6 A 2 ? 71 ? Q14549 256 ? 325 ? 2 71 2 2 2ME6 B 1 ? 14 ? 2ME6 1 ? 14 ? 1 14 3 2 2ME6 C 1 ? 14 ? 2ME6 15 ? 28 ? 15 28 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2ME6 _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q14549 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 1 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D 1H-13C NOESY aliphatic' 1 3 1 '3D 1H-13C NOESY aromatic' 1 4 1 '3D 1H-15N NOESY' 1 5 1 'APSY 4D-HACANH' 1 6 1 'APSY 5D-CBCACONH' 1 7 1 'APSY 5D-HACACONH' 1 8 1 '2D 13C/15N double-filtered 1H-1H NOESY' 1 9 2 '2D 13C/15N double-filtered 1H-1H NOESY' 1 10 2 '2D 1H-1H TOCSY' 1 11 2 '3D F2-edited, F3-filtered 1H-13C NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.220 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 308 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.8 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 0.8 mM DNA, 95% H2O/5% D2O' 1 '95% H2O/5% D2O' '0.8 mM [U-98% 13C; U-98% 15N] protein, 50 mM sodium chloride, 20 mM sodium phosphate, 5 mM sodium azide, 0.8 mM DNA, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker Avance 1 'Bruker Avance' 800 Bruker Avance 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2ME6 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 4 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2ME6 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2ME6 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger A. T. et.al.' 'structure solution' CNS ? 1 'Brunger A. T. et.al.' 'chemical shift assignment' CNS ? 2 'Keller and Wuthrich' 'structure solution' CNS ? 3 'Keller and Wuthrich' 'chemical shift assignment' CNS ? 4 'Brunger A. T. et.al.' 'structure solution' CNS ? 5 'Brunger A. T. et.al.' 'chemical shift assignment' CNS ? 6 'Keller and Wuthrich' 'structure solution' CNS ? 7 'Keller and Wuthrich' 'chemical shift assignment' CNS ? 8 'Herrmann and Wuthrich' 'chemical shift assignment' UNIO ? 9 'Herrmann and Wuthrich' 'structure solution' UNIO ? 10 'Bruker Biospin' processing TOPSPIN ? 11 'Bruker Biospin' collection TOPSPIN ? 12 ;Linge, O'Donoghue and Nilges ; refinement ARIA ? 13 'Alexandre Bonvin' refinement HADDOCK ? 14 'Bartels et al.' 'data analysis' XEASY ? 15 'Van Dijk and Bovin' 'structure solution' 3D_DART ? 16 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2ME6 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2ME6 _struct.title 'NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens in complex with the DNA sequence CGACTAATTAGTCG' _struct.pdbx_descriptor ;Homeobox protein GBX-1/DNA (5'-D(*CP*GP*AP*CP*TP*AP*AP*TP*TP*AP*GP*TP*CP*G)-3') ; _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ME6 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;DNA binding, TRANSCRIPTION, TRANSCRIPTION-DNA complex, Structural Genomics, PSI-Biology, Joint Center for Structural Genomics, JCSG, Partnership for Stem Cell Biology, STEMCELL ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? HIS A 27 ? THR A 15 HIS A 27 1 ? 13 HELX_P HELX_P2 2 SER A 33 ? LEU A 44 ? SER A 33 LEU A 44 1 ? 12 HELX_P HELX_P3 3 SER A 47 ? ARG A 64 ? SER A 47 ARG A 64 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 14 N2 ? ? B DC 1 C DG 28 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog2 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 14 N1 ? ? B DC 1 C DG 28 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog3 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 2 C DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 2 C DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 2 C DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 12 N3 ? ? B DA 3 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 12 O4 ? ? B DA 3 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DC 4 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 4 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DC 4 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 4 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DC 4 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 4 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 6 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 6 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 7 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 7 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DT 8 N3 ? ? ? 1_555 C DA 7 N1 ? ? B DT 8 C DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DT 8 O4 ? ? ? 1_555 C DA 7 N6 ? ? B DT 8 C DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 9 C DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 10 C DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 10 C DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 11 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 11 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 11 C DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 12 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 12 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 2 N1 ? ? B DC 13 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 2 O6 ? ? B DC 13 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 2 N2 ? ? B DC 13 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 14 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 14 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 14 C DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2ME6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 TRP 54 54 54 TRP TRP A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 SER 71 71 71 SER SER A . n B 2 1 DC 1 1 1 DC DC B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DA 3 3 3 DA DA B . n B 2 4 DC 4 4 4 DC DC B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DT 8 8 8 DT DT B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DC 13 13 13 DC DC B . n B 2 14 DG 14 14 14 DG DG B . n C 2 1 DC 1 15 15 DC DC C . n C 2 2 DG 2 16 16 DG DG C . n C 2 3 DA 3 17 17 DA DA C . n C 2 4 DC 4 18 18 DC DC C . n C 2 5 DT 5 19 19 DT DT C . n C 2 6 DA 6 20 20 DA DA C . n C 2 7 DA 7 21 21 DA DA C . n C 2 8 DT 8 22 22 DT DT C . n C 2 9 DT 9 23 23 DT DT C . n C 2 10 DA 10 24 24 DA DA C . n C 2 11 DG 11 25 25 DG DG C . n C 2 12 DT 12 26 26 DT DT C . n C 2 13 DC 13 27 27 DC DC C . n C 2 14 DG 14 28 28 DG DG C . n # loop_ _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center _pdbx_SG_project.project_name 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for Stem Cell Biology' 2 STEMCELL PSI:Biology # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity-1 0.8 ? mM '[U-98% 13C; U-98% 15N]' 1 'sodium chloride-2' 50 ? mM ? 1 'sodium phosphate-3' 20 ? mM ? 1 'sodium azide-4' 5 ? mM ? 1 DNA-5 0.8 ? mM ? 1 entity-6 0.8 ? mM '[U-98% 13C; U-98% 15N]' 2 'sodium chloride-7' 50 ? mM ? 2 'sodium phosphate-8' 20 ? mM ? 2 'sodium azide-9' 5 ? mM ? 2 DNA-10 0.8 ? mM ? 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 B DC 1 ? ? H22 C DG 28 ? ? 1.42 2 1 OE1 A GLU 25 ? ? HZ1 A LYS 29 ? ? 1.57 3 1 O2 B DC 1 ? ? N2 C DG 28 ? ? 2.18 4 2 O2 B DC 1 ? ? H22 C DG 28 ? ? 1.44 5 2 HZ1 A LYS 29 ? ? OE2 A GLU 36 ? ? 1.55 6 2 O2 B DC 1 ? ? N2 C DG 28 ? ? 2.18 7 3 O2 B DC 1 ? ? H22 C DG 28 ? ? 1.40 8 3 O2 B DC 1 ? ? N2 C DG 28 ? ? 2.19 9 4 O2 B DC 1 ? ? H22 C DG 28 ? ? 1.41 10 4 O2 B DC 1 ? ? N2 C DG 28 ? ? 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 11 ? ? 167.17 93.78 2 1 THR A 12 ? ? -39.90 120.62 3 2 GLU A 21 ? ? -107.48 60.64 4 2 LEU A 22 ? ? -157.40 -33.07 5 2 LYS A 45 ? ? -82.61 35.91 6 3 LEU A 34 ? ? 52.25 -89.36 7 3 LEU A 44 ? ? -120.72 -166.78 8 3 ILE A 65 ? ? -121.72 -59.79 9 3 ALA A 67 ? ? -162.60 -153.69 10 4 ARG A 11 ? ? -169.91 95.40 11 4 LEU A 34 ? ? -67.33 69.27 12 4 THR A 35 ? ? 158.78 -22.59 13 4 LYS A 66 ? ? -84.08 42.13 14 4 ASN A 69 ? ? -110.95 -164.08 # _ndb_struct_conf_na.entry_id 2ME6 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 14 1_555 0.395 -0.114 -0.158 30.542 0.493 11.835 1 B_DC1:DG28_C B 1 ? C 28 ? 22 1 1 B DG 2 1_555 C DC 13 1_555 -0.257 -0.090 0.011 13.661 -3.280 0.708 2 B_DG2:DC27_C B 2 ? C 27 ? 19 1 1 B DA 3 1_555 C DT 12 1_555 -0.012 -0.084 0.140 11.229 -5.076 -2.693 3 B_DA3:DT26_C B 3 ? C 26 ? 20 1 1 B DC 4 1_555 C DG 11 1_555 -0.123 -0.107 -0.055 9.725 -8.139 -3.060 4 B_DC4:DG25_C B 4 ? C 25 ? 19 1 1 B DT 5 1_555 C DA 10 1_555 -0.107 -0.041 -0.320 12.236 -7.814 -4.787 5 B_DT5:DA24_C B 5 ? C 24 ? 20 1 1 B DA 6 1_555 C DT 9 1_555 -0.017 -0.016 0.251 25.535 0.148 1.026 6 B_DA6:DT23_C B 6 ? C 23 ? 20 1 1 B DA 7 1_555 C DT 8 1_555 0.170 -0.121 -0.250 8.962 -22.015 1.486 7 B_DA7:DT22_C B 7 ? C 22 ? 20 1 1 B DT 8 1_555 C DA 7 1_555 0.053 -0.104 -0.116 -6.283 -24.041 -1.933 8 B_DT8:DA21_C B 8 ? C 21 ? 20 1 1 B DT 9 1_555 C DA 6 1_555 -0.183 0.008 -0.101 -43.519 -25.214 12.659 9 B_DT9:DA20_C B 9 ? C 20 ? 20 1 1 B DA 10 1_555 C DT 5 1_555 0.154 0.078 -0.379 -30.190 -12.956 3.810 10 B_DA10:DT19_C B 10 ? C 19 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 -0.014 -0.071 -0.165 -18.229 3.644 0.492 11 B_DG11:DC18_C B 11 ? C 18 ? 19 1 1 B DT 12 1_555 C DA 3 1_555 -0.144 -0.020 -0.115 -2.701 -7.622 -2.616 12 B_DT12:DA17_C B 12 ? C 17 ? 20 1 1 B DC 13 1_555 C DG 2 1_555 0.092 -0.148 -0.107 -2.541 -10.408 1.306 13 B_DC13:DG16_C B 13 ? C 16 ? 19 1 1 B DG 14 1_555 C DC 1 1_555 -0.209 -0.114 -0.645 -22.641 -11.895 0.327 14 B_DG14:DC15_C B 14 ? C 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 14 1_555 B DG 2 1_555 C DC 13 1_555 -0.569 0.138 3.838 -0.028 6.490 34.675 -0.906 0.935 3.802 10.772 0.046 35.259 1 BB_DC1DG2:DC27DG28_CC B 1 ? C 28 ? B 2 ? C 27 ? 1 B DG 2 1_555 C DC 13 1_555 B DA 3 1_555 C DT 12 1_555 -0.100 0.935 3.438 -0.385 -5.207 38.609 2.055 0.102 3.290 -7.831 0.579 38.947 2 BB_DG2DA3:DT26DC27_CC B 2 ? C 27 ? B 3 ? C 26 ? 1 B DA 3 1_555 C DT 12 1_555 B DC 4 1_555 C DG 11 1_555 -0.319 0.125 3.407 -0.342 10.380 34.829 -1.324 0.461 3.311 16.882 0.557 36.298 3 BB_DA3DC4:DG25DT26_CC B 3 ? C 26 ? B 4 ? C 25 ? 1 B DC 4 1_555 C DG 11 1_555 B DT 5 1_555 C DA 10 1_555 0.128 0.571 3.186 3.095 1.706 35.993 0.684 0.221 3.208 2.753 -4.993 36.161 4 BB_DC4DT5:DA24DG25_CC B 4 ? C 25 ? B 5 ? C 24 ? 1 B DT 5 1_555 C DA 10 1_555 B DA 6 1_555 C DT 9 1_555 0.971 0.792 3.065 -0.388 2.962 33.140 0.917 -1.757 3.111 5.180 0.678 33.271 5 BB_DT5DA6:DT23DA24_CC B 5 ? C 24 ? B 6 ? C 23 ? 1 B DA 6 1_555 C DT 9 1_555 B DA 7 1_555 C DT 8 1_555 -0.726 0.427 3.823 2.383 11.989 33.990 -1.327 1.573 3.702 19.733 -3.922 36.060 6 BB_DA6DA7:DT22DT23_CC B 6 ? C 23 ? B 7 ? C 22 ? 1 B DA 7 1_555 C DT 8 1_555 B DT 8 1_555 C DA 7 1_555 -0.363 -0.098 3.571 -0.718 -0.728 39.509 -0.052 0.445 3.578 -1.076 1.062 39.522 7 BB_DA7DT8:DA21DT22_CC B 7 ? C 22 ? B 8 ? C 21 ? 1 B DT 8 1_555 C DA 7 1_555 B DT 9 1_555 C DA 6 1_555 1.239 0.987 4.212 4.845 13.936 39.454 -0.597 -1.041 4.417 19.822 -6.891 42.020 8 BB_DT8DT9:DA20DA21_CC B 8 ? C 21 ? B 9 ? C 20 ? 1 B DT 9 1_555 C DA 6 1_555 B DA 10 1_555 C DT 5 1_555 -1.011 1.297 3.231 -12.244 4.464 35.906 1.385 -0.101 3.510 6.965 19.102 38.125 9 BB_DT9DA10:DT19DA20_CC B 9 ? C 20 ? B 10 ? C 19 ? 1 B DA 10 1_555 C DT 5 1_555 B DG 11 1_555 C DC 4 1_555 -0.045 0.744 2.991 -3.964 4.593 31.564 0.578 -0.580 3.049 8.347 7.204 32.127 10 BB_DA10DG11:DC18DT19_CC B 10 ? C 19 ? B 11 ? C 18 ? 1 B DG 11 1_555 C DC 4 1_555 B DT 12 1_555 C DA 3 1_555 -0.571 1.162 3.039 -0.065 -6.421 34.566 2.786 0.938 2.787 -10.692 0.108 35.139 11 BB_DG11DT12:DA17DC18_CC B 11 ? C 18 ? B 12 ? C 17 ? 1 B DT 12 1_555 C DA 3 1_555 B DC 13 1_555 C DG 2 1_555 0.296 0.158 3.294 0.349 -1.662 37.667 0.460 -0.412 3.287 -2.573 -0.540 37.704 12 BB_DT12DC13:DG16DA17_CC B 12 ? C 17 ? B 13 ? C 16 ? 1 B DC 13 1_555 C DG 2 1_555 B DG 14 1_555 C DC 1 1_555 0.252 -0.191 3.814 5.291 11.874 35.230 -2.112 0.416 3.568 18.843 -8.397 37.481 13 BB_DC13DG14:DC15DG16_CC B 13 ? C 16 ? B 14 ? C 15 ? #