HEADER TRANSCRIPTION 24-SEP-13 2MEM TITLE SOLUTION NMR STRUCTURE OF SLED DOMAIN OF SCML2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEX COMB ON MIDLEG-LIKE PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 354-468; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCML2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS PRC1, PCG, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.BEZSONOVA REVDAT 4 14-JUN-23 2MEM 1 REMARK SEQADV REVDAT 3 18-JUN-14 2MEM 1 JRNL REVDAT 2 28-MAY-14 2MEM 1 JRNL REVDAT 1 23-APR-14 2MEM 0 JRNL AUTH I.BEZSONOVA JRNL TITL SOLUTION NMR STRUCTURE OF THE DNA-BINDING DOMAIN FROM SCML2 JRNL TITL 2 (SEX COMB ON MIDLEG-LIKE 2). JRNL REF J.BIOL.CHEM. V. 289 15739 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24727478 JRNL DOI 10.1074/JBC.M113.524009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000103535. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 250 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-1.0 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 367 -63.31 -91.38 REMARK 500 1 ASN A 440 -3.22 -142.56 REMARK 500 2 PHE A 367 -65.02 -109.22 REMARK 500 2 PRO A 380 155.51 -48.39 REMARK 500 2 GLU A 405 72.60 59.49 REMARK 500 2 ASN A 440 0.44 -155.80 REMARK 500 3 GLU A 405 66.68 68.61 REMARK 500 4 PHE A 367 -64.51 -97.54 REMARK 500 4 ARG A 418 -62.21 -109.87 REMARK 500 4 SER A 463 115.47 -165.16 REMARK 500 5 GLU A 405 61.48 60.41 REMARK 500 5 ASN A 417 45.60 -88.94 REMARK 500 6 ASN A 417 45.78 -89.97 REMARK 500 6 ASN A 440 5.63 -151.48 REMARK 500 6 ASN A 460 19.08 59.75 REMARK 500 6 SER A 464 47.03 -88.06 REMARK 500 7 GLU A 405 60.01 66.16 REMARK 500 7 ASN A 440 -0.21 -153.46 REMARK 500 8 ASN A 440 18.26 -150.43 REMARK 500 8 SER A 463 115.54 -165.79 REMARK 500 9 GLU A 405 66.26 64.46 REMARK 500 9 ASN A 440 15.69 -155.67 REMARK 500 10 MET A 353 -165.50 -75.75 REMARK 500 10 VAL A 361 98.57 -69.90 REMARK 500 10 ASN A 417 38.65 -96.34 REMARK 500 10 ASN A 440 12.11 -154.32 REMARK 500 10 ASN A 460 26.11 48.64 REMARK 500 11 PHE A 367 -64.41 -95.14 REMARK 500 11 GLU A 405 68.49 64.55 REMARK 500 11 ASN A 440 0.07 -153.22 REMARK 500 12 GLU A 405 62.28 66.32 REMARK 500 12 ASN A 417 44.94 -91.06 REMARK 500 12 ASN A 440 -12.97 -148.18 REMARK 500 13 PHE A 367 -64.63 -97.32 REMARK 500 14 GLU A 405 61.39 64.54 REMARK 500 14 ASN A 417 33.21 -86.82 REMARK 500 14 ASN A 440 -0.93 -149.04 REMARK 500 14 GLN A 457 7.23 80.07 REMARK 500 14 ASN A 460 18.27 59.74 REMARK 500 15 PHE A 367 -62.19 -96.00 REMARK 500 15 GLU A 405 61.30 62.77 REMARK 500 15 ASN A 440 -4.52 -152.06 REMARK 500 16 ASN A 440 23.31 -151.22 REMARK 500 16 ASN A 460 27.10 47.62 REMARK 500 17 GLU A 405 68.73 63.58 REMARK 500 17 ASN A 440 4.19 -154.91 REMARK 500 17 ASN A 460 25.48 46.35 REMARK 500 18 PRO A 380 152.94 -41.69 REMARK 500 18 ASN A 440 11.04 -155.12 REMARK 500 18 ASN A 460 14.97 59.59 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BIV RELATED DB: PDB REMARK 900 MBT DOMAINS OF SCML2 REMARK 900 RELATED ID: 2VYT RELATED DB: PDB REMARK 900 MBT DOMAINS OF SCML2 REMARK 900 RELATED ID: 1OI1 RELATED DB: PDB REMARK 900 MBT DOMAINS OF SCML2 REMARK 900 RELATED ID: 4EDU RELATED DB: PDB REMARK 900 MBT DOMAINS OF SCML2 REMARK 900 RELATED ID: 19526 RELATED DB: BMRB DBREF 2MEM A 354 468 UNP Q9UQR0 SCML2_HUMAN 354 468 SEQADV 2MEM GLY A 350 UNP Q9UQR0 EXPRESSION TAG SEQADV 2MEM SER A 351 UNP Q9UQR0 EXPRESSION TAG SEQADV 2MEM HIS A 352 UNP Q9UQR0 EXPRESSION TAG SEQADV 2MEM MET A 353 UNP Q9UQR0 EXPRESSION TAG SEQRES 1 A 119 GLY SER HIS MET MET SER THR VAL CYS VAL TYR VAL ASN SEQRES 2 A 119 LYS HIS GLY ASN PHE GLY PRO HIS LEU ASP PRO LYS ARG SEQRES 3 A 119 ILE GLN GLN LEU PRO ASP HIS PHE GLY PRO GLY PRO VAL SEQRES 4 A 119 ASN VAL VAL LEU ARG ARG ILE VAL GLN ALA CYS VAL ASP SEQRES 5 A 119 CYS ALA LEU GLU THR LYS THR VAL PHE GLY TYR LEU LYS SEQRES 6 A 119 PRO ASP ASN ARG GLY GLY GLU VAL ILE THR ALA SER PHE SEQRES 7 A 119 ASP GLY GLU THR HIS SER ILE GLN LEU PRO PRO VAL ASN SEQRES 8 A 119 SER ALA SER PHE ALA LEU ARG PHE LEU GLU ASN PHE CYS SEQRES 9 A 119 HIS SER LEU GLN CYS ASP ASN LEU LEU SER SER GLN PRO SEQRES 10 A 119 PHE SER HELIX 1 1 ASP A 372 LEU A 379 1 8 HELIX 2 2 VAL A 388 ALA A 403 1 16 HELIX 3 3 GLU A 405 PHE A 410 1 6 HELIX 4 4 SER A 441 LEU A 456 1 16 SHEET 1 A 2 THR A 356 VAL A 359 0 SHEET 2 A 2 PHE A 383 PRO A 387 -1 O PHE A 383 N VAL A 359 SHEET 1 B 2 VAL A 422 PHE A 427 0 SHEET 2 B 2 GLU A 430 GLN A 435 -1 O ILE A 434 N ILE A 423 CISPEP 1 GLY A 368 PRO A 369 1 9.72 CISPEP 2 GLY A 384 PRO A 385 1 -1.53 CISPEP 3 GLY A 368 PRO A 369 2 7.98 CISPEP 4 GLY A 384 PRO A 385 2 -2.99 CISPEP 5 GLY A 368 PRO A 369 3 7.36 CISPEP 6 GLY A 384 PRO A 385 3 -1.65 CISPEP 7 GLY A 368 PRO A 369 4 11.98 CISPEP 8 GLY A 384 PRO A 385 4 -1.78 CISPEP 9 GLY A 368 PRO A 369 5 10.92 CISPEP 10 GLY A 384 PRO A 385 5 1.13 CISPEP 11 GLY A 368 PRO A 369 6 5.18 CISPEP 12 GLY A 384 PRO A 385 6 -0.49 CISPEP 13 GLY A 368 PRO A 369 7 7.16 CISPEP 14 GLY A 384 PRO A 385 7 -4.48 CISPEP 15 GLY A 368 PRO A 369 8 10.00 CISPEP 16 GLY A 384 PRO A 385 8 0.06 CISPEP 17 GLY A 368 PRO A 369 9 8.29 CISPEP 18 GLY A 384 PRO A 385 9 2.91 CISPEP 19 GLY A 368 PRO A 369 10 8.95 CISPEP 20 GLY A 384 PRO A 385 10 1.70 CISPEP 21 GLY A 368 PRO A 369 11 4.66 CISPEP 22 GLY A 384 PRO A 385 11 -5.74 CISPEP 23 GLY A 368 PRO A 369 12 4.60 CISPEP 24 GLY A 384 PRO A 385 12 -3.69 CISPEP 25 GLY A 368 PRO A 369 13 12.34 CISPEP 26 GLY A 384 PRO A 385 13 -2.83 CISPEP 27 GLY A 368 PRO A 369 14 -2.71 CISPEP 28 GLY A 384 PRO A 385 14 -2.75 CISPEP 29 GLY A 368 PRO A 369 15 11.17 CISPEP 30 GLY A 384 PRO A 385 15 1.33 CISPEP 31 GLY A 368 PRO A 369 16 2.70 CISPEP 32 GLY A 384 PRO A 385 16 -4.12 CISPEP 33 GLY A 368 PRO A 369 17 11.12 CISPEP 34 GLY A 384 PRO A 385 17 4.68 CISPEP 35 GLY A 368 PRO A 369 18 10.46 CISPEP 36 GLY A 384 PRO A 385 18 2.91 CISPEP 37 GLY A 368 PRO A 369 19 9.03 CISPEP 38 GLY A 384 PRO A 385 19 -1.77 CISPEP 39 GLY A 368 PRO A 369 20 -0.50 CISPEP 40 GLY A 384 PRO A 385 20 0.67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1