HEADER ALLERGEN 02-OCT-13 2MEY TITLE RDC REFINED SOLUTION STRUCTURE OF BLO T 5. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITE ALLERGEN BLO T 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 18-134; COMPND 5 SYNONYM: BLO T 5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLOMIA TROPICALIS; SOURCE 3 ORGANISM_COMMON: MITE; SOURCE 4 ORGANISM_TAXID: 40697; SOURCE 5 GENE: BLOT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX4T-1 KEYWDS ALLERGEN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.T.NAIK,T.HUANG REVDAT 2 14-JUN-23 2MEY 1 REMARK SEQADV REVDAT 1 05-NOV-14 2MEY 0 JRNL AUTH M.T.NAIK,N.NAIK,T.HUANG JRNL TITL NMR STRUCTURE NOTE: BLO T 5 FROM BLOMIA TROPICALIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.T.NAIK,C.F.CHANG,I.C.KUO,T.YU,P.J.FANG,K.Y.CHUA,T.H.HUANG REMARK 1 TITL COMPLETE 1H, 13C AND 15N RESONANCE ASSIGNMENTS OF BLO T 5, A REMARK 1 TITL 2 MAJOR MITE ALLERGEN FROM BLOMIA TROPICALIS. REMARK 1 REF J.BIOMOL.NMR V. 38 189 2007 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 17206470 REMARK 1 DOI 10.1007/S10858-006-9113-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0, X-PLOR NIH 2.34 REMARK 3 AUTHORS : BRUKER (TOPSPIN), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EXPLICIT WATER REFINEMENT REMARK 4 REMARK 4 2MEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000103546. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] BLO T 5-1, REMARK 210 50 MM POTASSIUM PHOSPHATE-2, 100 REMARK 210 MM SODIUM CHLORIDE-3, 2 MM EDTA- REMARK 210 4, 0.001 % SODIUM AZIDE-5, 14 MG/ REMARK 210 ML PF1 PHAGE-6, 1 MM [U-13C; U- REMARK 210 15N] BLO T 5-7, 50 MM POTASSIUM REMARK 210 PHOSPHATE-8, 100 MM SODIUM REMARK 210 CHLORIDE-9, 2 MM EDTA-10, 0.001 % REMARK 210 SODIUM AZIDE-11, 90% H2O/10% REMARK 210 D2O; 1 MM [U-15N] BLO T 5-12, 50 REMARK 210 MM POTASSIUM PHOSPHATE-13, 100 REMARK 210 MM SODIUM CHLORIDE-14, 2 MM EDTA- REMARK 210 15, 0.001 % SODIUM AZIDE-16, 4 % REMARK 210 C12E5/N-HEXANOL-17, 1 MM [U-15N] REMARK 210 BLO T 5-18, 50 MM POTASSIUM REMARK 210 PHOSPHATE-19, 100 MM SODIUM REMARK 210 CHLORIDE-20, 2 MM EDTA-21, 0.001 REMARK 210 % SODIUM AZIDE-22, 6 % REMARK 210 POLYACRYLAMIDE GEL-23, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-15N] BLO T 5-24, REMARK 210 50 MM POTASSIUM PHOSPHATE-25, REMARK 210 100 MM SODIUM CHLORIDE-26, 2 MM REMARK 210 EDTA-27, 0.001 % SODIUM AZIDE-28, REMARK 210 4 % C12E5/N-HEXANOL-29, 1 MM [U- REMARK 210 15N] BLO T 5-30, 50 MM POTASSIUM REMARK 210 PHOSPHATE-31, 100 MM SODIUM REMARK 210 CHLORIDE-32, 2 MM EDTA-33, 0.001 REMARK 210 % SODIUM AZIDE-34, 6 % REMARK 210 POLYACRYLAMIDE GEL-35, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-13C; U-15N] BLO REMARK 210 T 5-36, 50 MM POTASSIUM REMARK 210 PHOSPHATE-37, 100 MM SODIUM REMARK 210 CHLORIDE-38, 2 MM EDTA-39, 0.001 REMARK 210 % SODIUM AZIDE-40, 14 MG/ML PF1 REMARK 210 PHAGE-41, 1 MM [U-13C; U-15N] REMARK 210 BLO T 5-42, 50 MM POTASSIUM REMARK 210 PHOSPHATE-43, 100 MM SODIUM REMARK 210 CHLORIDE-44, 2 MM EDTA-45, 0.001 REMARK 210 % SODIUM AZIDE-46, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : IPAP-15N-HSQC; IPAP-J-HNCO; IPAP REMARK 210 -15N_HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, SPARKY 3.112, PALES REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 5 -158.14 -77.77 REMARK 500 1 LYS A 47 19.57 57.13 REMARK 500 1 LEU A 82 73.12 51.48 REMARK 500 1 ASN A 83 105.13 178.56 REMARK 500 2 PHE A 14 83.22 -69.52 REMARK 500 2 LEU A 17 98.01 177.13 REMARK 500 3 PRO A 5 52.79 -69.58 REMARK 500 3 LYS A 6 -173.65 61.99 REMARK 500 3 ASP A 8 -126.73 -169.79 REMARK 500 3 ASN A 12 102.54 -163.86 REMARK 500 3 PHE A 14 -155.37 -117.56 REMARK 500 3 HIS A 16 129.35 -177.14 REMARK 500 3 LYS A 47 19.05 58.79 REMARK 500 3 ASN A 83 115.62 172.35 REMARK 500 4 LEU A 17 106.73 -172.71 REMARK 500 4 LEU A 82 -24.84 -165.67 REMARK 500 4 THR A 116 -164.35 -127.90 REMARK 500 5 PHE A 14 73.83 47.52 REMARK 500 5 LEU A 17 119.01 -25.48 REMARK 500 5 LEU A 82 110.32 -161.14 REMARK 500 5 ASN A 83 167.99 121.14 REMARK 500 5 THR A 116 -163.74 -122.19 REMARK 500 6 PRO A 5 158.59 -49.11 REMARK 500 6 ARG A 11 -159.46 -143.96 REMARK 500 6 ASN A 12 25.63 -79.73 REMARK 500 6 PHE A 14 76.22 -109.08 REMARK 500 6 HIS A 16 70.31 41.76 REMARK 500 6 LEU A 17 -165.11 -126.58 REMARK 500 6 LYS A 47 101.64 53.35 REMARK 500 7 GLU A 2 -75.09 -95.06 REMARK 500 7 HIS A 3 69.88 -111.67 REMARK 500 7 HIS A 16 43.10 75.36 REMARK 500 7 THR A 80 72.95 -159.16 REMARK 500 7 ASN A 83 126.69 171.15 REMARK 500 8 PRO A 5 93.13 -61.78 REMARK 500 8 LYS A 6 102.37 -58.09 REMARK 500 8 HIS A 16 87.24 57.97 REMARK 500 8 LEU A 18 -79.25 -62.99 REMARK 500 8 LYS A 47 15.21 55.56 REMARK 500 8 ASP A 81 90.88 -48.75 REMARK 500 8 ASN A 83 146.85 79.43 REMARK 500 9 PRO A 5 86.27 -60.04 REMARK 500 9 PHE A 10 75.36 56.47 REMARK 500 9 PHE A 14 73.15 43.64 REMARK 500 9 HIS A 16 49.41 70.34 REMARK 500 9 LEU A 18 -73.90 -64.25 REMARK 500 9 LYS A 47 15.62 55.32 REMARK 500 10 PRO A 5 -103.58 -64.02 REMARK 500 10 PHE A 14 -23.94 75.19 REMARK 500 10 LEU A 82 72.41 -156.02 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7276 RELATED DB: BMRB REMARK 900 RELATED ID: 2JMH RELATED DB: PDB DBREF 2MEY A 1 117 UNP O96870 ALL5_BLOTA 18 134 SEQADV 2MEY GLY A -1 UNP O96870 EXPRESSION TAG SEQADV 2MEY SER A 0 UNP O96870 EXPRESSION TAG SEQRES 1 A 119 GLY SER GLN GLU HIS LYS PRO LYS LYS ASP ASP PHE ARG SEQRES 2 A 119 ASN GLU PHE ASP HIS LEU LEU ILE GLU GLN ALA ASN HIS SEQRES 3 A 119 ALA ILE GLU LYS GLY GLU HIS GLN LEU LEU TYR LEU GLN SEQRES 4 A 119 HIS GLN LEU ASP GLU LEU ASN GLU ASN LYS SER LYS GLU SEQRES 5 A 119 LEU GLN GLU LYS ILE ILE ARG GLU LEU ASP VAL VAL CYS SEQRES 6 A 119 ALA MET ILE GLU GLY ALA GLN GLY ALA LEU GLU ARG GLU SEQRES 7 A 119 LEU LYS ARG THR ASP LEU ASN ILE LEU GLU ARG PHE ASN SEQRES 8 A 119 TYR GLU GLU ALA GLN THR LEU SER LYS ILE LEU LEU LYS SEQRES 9 A 119 ASP LEU LYS GLU THR GLU GLN LYS VAL LYS ASP ILE GLN SEQRES 10 A 119 THR GLN HELIX 1 1 LEU A 17 LYS A 47 1 31 HELIX 2 2 SER A 48 LYS A 78 1 31 HELIX 3 3 ASN A 83 ILE A 114 1 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1