data_2MF8 # _entry.id 2MF8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MF8 pdb_00002mf8 10.2210/pdb2mf8/pdb RCSB RCSB103556 ? ? BMRB 19540 ? ? WWPDB D_1000103556 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19540 BMRB unspecified . 2JYD PDB unspecified 'HADDOCK STARTING STRUCTURE' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MF8 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-08 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gamsjaeger, R.' 1 ;O'Connell, M.R. ; 2 'Cubeddu, L.' 3 'Shepherd, N.E.' 4 'Lowry, J.A.' 5 'Kwan, A.H.' 6 'Vandevenne, M.' 7 'Swanton, M.K.' 8 'Matthews, J.M.' 9 'Mackay, J.P.' 10 # _citation.id primary _citation.title 'A structural analysis of DNA binding by myelin transcription factor 1 double zinc fingers.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 35180 _citation.page_last 35191 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24097990 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.482075 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gamsjaeger, R.' 1 ? primary ;O'Connell, M.R. ; 2 ? primary 'Cubeddu, L.' 3 ? primary 'Shepherd, N.E.' 4 ? primary 'Lowry, J.A.' 5 ? primary 'Kwan, A.H.' 6 ? primary 'Vandevenne, M.' 7 ? primary 'Swanton, M.K.' 8 ? primary 'Matthews, J.M.' 9 ? primary 'Mackay, J.P.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Myelin transcription factor 1' 9579.887 1 ? ? 'UNP residues 792-880' ? 2 polymer syn ;DNA (5'-D(*AP*CP*CP*GP*AP*AP*AP*GP*TP*TP*CP*AP*C)-3') ; 3944.601 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*GP*AP*AP*CP*TP*TP*TP*CP*GP*GP*T)-3') ; 3997.607 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MyT1, Neural zinc finger factor 2, NZF-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSFDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSL SGCPRAKKSGLRV ; ;GPLGSFDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSL SGCPRAKKSGLRV ; A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DG)(DA)(DA)(DA)(DG)(DT)(DT)(DC)(DA)(DC)' ACCGAAAGTTCAC B ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DG)(DA)(DA)(DC)(DT)(DT)(DT)(DC)(DG)(DG)(DT)' GTGAACTTTCGGT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 PHE n 1 7 ASP n 1 8 ILE n 1 9 LYS n 1 10 LYS n 1 11 GLU n 1 12 LEU n 1 13 LEU n 1 14 THR n 1 15 CYS n 1 16 PRO n 1 17 THR n 1 18 PRO n 1 19 GLY n 1 20 CYS n 1 21 ASP n 1 22 GLY n 1 23 SER n 1 24 GLY n 1 25 HIS n 1 26 ILE n 1 27 THR n 1 28 GLY n 1 29 ASN n 1 30 TYR n 1 31 ALA n 1 32 SER n 1 33 HIS n 1 34 ARG n 1 35 SER n 1 36 LEU n 1 37 SER n 1 38 GLY n 1 39 CYS n 1 40 PRO n 1 41 LEU n 1 42 ALA n 1 43 ASP n 1 44 LYS n 1 45 SER n 1 46 LEU n 1 47 ARG n 1 48 ASN n 1 49 LEU n 1 50 MET n 1 51 ALA n 1 52 ALA n 1 53 HIS n 1 54 SER n 1 55 ALA n 1 56 ASP n 1 57 LEU n 1 58 LYS n 1 59 CYS n 1 60 PRO n 1 61 THR n 1 62 PRO n 1 63 GLY n 1 64 CYS n 1 65 ASP n 1 66 GLY n 1 67 SER n 1 68 GLY n 1 69 HIS n 1 70 ILE n 1 71 THR n 1 72 GLY n 1 73 ASN n 1 74 TYR n 1 75 ALA n 1 76 SER n 1 77 HIS n 1 78 ARG n 1 79 SER n 1 80 LEU n 1 81 SER n 1 82 GLY n 1 83 CYS n 1 84 PRO n 1 85 ARG n 1 86 ALA n 1 87 LYS n 1 88 LYS n 1 89 SER n 1 90 GLY n 1 91 LEU n 1 92 ARG n 1 93 VAL n 2 1 DA n 2 2 DC n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DT n 2 11 DC n 2 12 DA n 2 13 DC n 3 1 DG n 3 2 DT n 3 3 DG n 3 4 DA n 3 5 DA n 3 6 DC n 3 7 DT n 3 8 DT n 3 9 DT n 3 10 DC n 3 11 DG n 3 12 DG n 3 13 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Myt1, Kiaa0835, Nzf2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MYT1_MOUSE Q8CFC2 1 ;SKDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCP RAKKSGLKV ; 792 ? 2 PDB 2MF8 2MF8 2 ? ? ? 3 PDB 2MF8 2MF8 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MF8 A 5 ? 93 ? Q8CFC2 792 ? 880 ? 792 880 2 2 2MF8 B 1 ? 13 ? 2MF8 1 ? 13 ? 1 13 3 3 2MF8 C 1 ? 13 ? 2MF8 14 ? 26 ? 14 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MF8 GLY A 1 ? UNP Q8CFC2 ? ? 'expression tag' 788 1 1 2MF8 PRO A 2 ? UNP Q8CFC2 ? ? 'expression tag' 789 2 1 2MF8 LEU A 3 ? UNP Q8CFC2 ? ? 'expression tag' 790 3 1 2MF8 GLY A 4 ? UNP Q8CFC2 ? ? 'expression tag' 791 4 1 2MF8 PHE A 6 ? UNP Q8CFC2 LYS 793 conflict 793 5 1 2MF8 ARG A 92 ? UNP Q8CFC2 LYS 879 conflict 879 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-15N HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HNCO' 1 6 1 '3D HN(CA)CO' 1 7 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 60 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MF8 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;THE STARTING STRUCTURE OF THE PROTEIN WAS AN IN SILICO FUSION OF TWO MYT1 F5 ZINC FINGERS FROM PDB ENTRY 2JYD. THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MF8 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MF8 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_software.authors 'Bonvin, A. et al.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name HADDOCK _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MF8 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MF8 _struct.title 'HADDOCK model of MyT1 F4F5 - DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MF8 _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN/DNA' _struct_keywords.text 'MyT1, zinc finger, METAL BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 15 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 802 A ZN 901 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc2 metalc ? ? A CYS 20 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 807 A ZN 901 1_555 ? ? ? ? ? ? ? 1.944 ? ? metalc3 metalc ? ? A HIS 33 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 820 A ZN 901 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc4 metalc ? ? A CYS 39 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 826 A ZN 901 1_555 ? ? ? ? ? ? ? 1.907 ? ? metalc5 metalc ? ? A CYS 59 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 846 A ZN 902 1_555 ? ? ? ? ? ? ? 1.956 ? ? metalc6 metalc ? ? A CYS 64 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 851 A ZN 902 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc7 metalc ? ? A HIS 77 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 864 A ZN 902 1_555 ? ? ? ? ? ? ? 2.639 ? ? metalc8 metalc ? ? A CYS 83 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 870 A ZN 902 1_555 ? ? ? ? ? ? ? 1.976 ? ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 1 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 1 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 5 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 5 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 6 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 6 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 7 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 7 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 10 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 10 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 12 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 12 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 901 ? 5 'BINDING SITE FOR RESIDUE ZN A 901' AC2 Software A ZN 902 ? 5 'BINDING SITE FOR RESIDUE ZN A 902' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 15 ? CYS A 802 . ? 1_555 ? 2 AC1 5 THR A 17 ? THR A 804 . ? 1_555 ? 3 AC1 5 CYS A 20 ? CYS A 807 . ? 1_555 ? 4 AC1 5 HIS A 33 ? HIS A 820 . ? 1_555 ? 5 AC1 5 CYS A 39 ? CYS A 826 . ? 1_555 ? 6 AC2 5 CYS A 59 ? CYS A 846 . ? 1_555 ? 7 AC2 5 THR A 61 ? THR A 848 . ? 1_555 ? 8 AC2 5 CYS A 64 ? CYS A 851 . ? 1_555 ? 9 AC2 5 HIS A 77 ? HIS A 864 . ? 1_555 ? 10 AC2 5 CYS A 83 ? CYS A 870 . ? 1_555 ? # _atom_sites.entry_id 2MF8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_ _database_PDB_caveat.text ;SEVERAL C-N OR O3'-P BONDS LIE OUTSIDE OF THE ACCEPTED RANGE. MANY VALUES OF COVALENT BOND LENGTH AND ANGLE DEVIATE SIGNIFICANTLY FROM STANDARD VALUES. ; # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 788 ? ? ? A . n A 1 2 PRO 2 789 ? ? ? A . n A 1 3 LEU 3 790 ? ? ? A . n A 1 4 GLY 4 791 ? ? ? A . n A 1 5 SER 5 792 ? ? ? A . n A 1 6 PHE 6 793 ? ? ? A . n A 1 7 ASP 7 794 ? ? ? A . n A 1 8 ILE 8 795 ? ? ? A . n A 1 9 LYS 9 796 ? ? ? A . n A 1 10 LYS 10 797 ? ? ? A . n A 1 11 GLU 11 798 ? ? ? A . n A 1 12 LEU 12 799 799 LEU LEU A . n A 1 13 LEU 13 800 800 LEU LEU A . n A 1 14 THR 14 801 801 THR THR A . n A 1 15 CYS 15 802 802 CYS CYS A . n A 1 16 PRO 16 803 803 PRO PRO A . n A 1 17 THR 17 804 804 THR THR A . n A 1 18 PRO 18 805 805 PRO PRO A . n A 1 19 GLY 19 806 806 GLY GLY A . n A 1 20 CYS 20 807 807 CYS CYS A . n A 1 21 ASP 21 808 808 ASP ASP A . n A 1 22 GLY 22 809 809 GLY GLY A . n A 1 23 SER 23 810 810 SER SER A . n A 1 24 GLY 24 811 811 GLY GLY A . n A 1 25 HIS 25 812 812 HIS HIS A . n A 1 26 ILE 26 813 813 ILE ILE A . n A 1 27 THR 27 814 814 THR THR A . n A 1 28 GLY 28 815 815 GLY GLY A . n A 1 29 ASN 29 816 816 ASN ASN A . n A 1 30 TYR 30 817 817 TYR TYR A . n A 1 31 ALA 31 818 818 ALA ALA A . n A 1 32 SER 32 819 819 SER SER A . n A 1 33 HIS 33 820 820 HIS HIS A . n A 1 34 ARG 34 821 821 ARG ARG A . n A 1 35 SER 35 822 822 SER SER A . n A 1 36 LEU 36 823 823 LEU LEU A . n A 1 37 SER 37 824 824 SER SER A . n A 1 38 GLY 38 825 825 GLY GLY A . n A 1 39 CYS 39 826 826 CYS CYS A . n A 1 40 PRO 40 827 827 PRO PRO A . n A 1 41 LEU 41 828 828 LEU LEU A . n A 1 42 ALA 42 829 829 ALA ALA A . n A 1 43 ASP 43 830 830 ASP ASP A . n A 1 44 LYS 44 831 831 LYS LYS A . n A 1 45 SER 45 832 832 SER SER A . n A 1 46 LEU 46 833 833 LEU LEU A . n A 1 47 ARG 47 834 834 ARG ARG A . n A 1 48 ASN 48 835 835 ASN ASN A . n A 1 49 LEU 49 836 836 LEU LEU A . n A 1 50 MET 50 837 837 MET MET A . n A 1 51 ALA 51 838 838 ALA ALA A . n A 1 52 ALA 52 839 839 ALA ALA A . n A 1 53 HIS 53 840 840 HIS HIS A . n A 1 54 SER 54 841 841 SER SER A . n A 1 55 ALA 55 842 842 ALA ALA A . n A 1 56 ASP 56 843 843 ASP ASP A . n A 1 57 LEU 57 844 844 LEU LEU A . n A 1 58 LYS 58 845 845 LYS LYS A . n A 1 59 CYS 59 846 846 CYS CYS A . n A 1 60 PRO 60 847 847 PRO PRO A . n A 1 61 THR 61 848 848 THR THR A . n A 1 62 PRO 62 849 849 PRO PRO A . n A 1 63 GLY 63 850 850 GLY GLY A . n A 1 64 CYS 64 851 851 CYS CYS A . n A 1 65 ASP 65 852 852 ASP ASP A . n A 1 66 GLY 66 853 853 GLY GLY A . n A 1 67 SER 67 854 854 SER SER A . n A 1 68 GLY 68 855 855 GLY GLY A . n A 1 69 HIS 69 856 856 HIS HIS A . n A 1 70 ILE 70 857 857 ILE ILE A . n A 1 71 THR 71 858 858 THR THR A . n A 1 72 GLY 72 859 859 GLY GLY A . n A 1 73 ASN 73 860 860 ASN ASN A . n A 1 74 TYR 74 861 861 TYR TYR A . n A 1 75 ALA 75 862 862 ALA ALA A . n A 1 76 SER 76 863 863 SER SER A . n A 1 77 HIS 77 864 864 HIS HIS A . n A 1 78 ARG 78 865 865 ARG ARG A . n A 1 79 SER 79 866 866 SER SER A . n A 1 80 LEU 80 867 867 LEU LEU A . n A 1 81 SER 81 868 868 SER SER A . n A 1 82 GLY 82 869 869 GLY GLY A . n A 1 83 CYS 83 870 870 CYS CYS A . n A 1 84 PRO 84 871 871 PRO PRO A . n A 1 85 ARG 85 872 872 ARG ARG A . n A 1 86 ALA 86 873 873 ALA ALA A . n A 1 87 LYS 87 874 ? ? ? A . n A 1 88 LYS 88 875 ? ? ? A . n A 1 89 SER 89 876 ? ? ? A . n A 1 90 GLY 90 877 ? ? ? A . n A 1 91 LEU 91 878 ? ? ? A . n A 1 92 ARG 92 879 ? ? ? A . n A 1 93 VAL 93 880 ? ? ? A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DA 12 12 12 DA DA B . n B 2 13 DC 13 13 13 DC DC B . n C 3 1 DG 1 14 14 DG DG C . n C 3 2 DT 2 15 15 DT DT C . n C 3 3 DG 3 16 16 DG DG C . n C 3 4 DA 4 17 17 DA DA C . n C 3 5 DA 5 18 18 DA DA C . n C 3 6 DC 6 19 19 DC DC C . n C 3 7 DT 7 20 20 DT DT C . n C 3 8 DT 8 21 21 DT DT C . n C 3 9 DT 9 22 22 DT DT C . n C 3 10 DC 10 23 23 DC DC C . n C 3 11 DG 11 24 24 DG DG C . n C 3 12 DG 12 25 25 DG DG C . n C 3 13 DT 13 26 26 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 901 901 ZN ZN A . E 4 ZN 1 902 902 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 15 ? A CYS 802 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 SG ? A CYS 20 ? A CYS 807 ? 1_555 103.2 ? 2 SG ? A CYS 15 ? A CYS 802 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 NE2 ? A HIS 33 ? A HIS 820 ? 1_555 80.9 ? 3 SG ? A CYS 20 ? A CYS 807 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 NE2 ? A HIS 33 ? A HIS 820 ? 1_555 88.6 ? 4 SG ? A CYS 15 ? A CYS 802 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 SG ? A CYS 39 ? A CYS 826 ? 1_555 109.8 ? 5 SG ? A CYS 20 ? A CYS 807 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 SG ? A CYS 39 ? A CYS 826 ? 1_555 146.2 ? 6 NE2 ? A HIS 33 ? A HIS 820 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 SG ? A CYS 39 ? A CYS 826 ? 1_555 89.7 ? 7 SG ? A CYS 59 ? A CYS 846 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 SG ? A CYS 64 ? A CYS 851 ? 1_555 88.9 ? 8 SG ? A CYS 59 ? A CYS 846 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 NE2 ? A HIS 77 ? A HIS 864 ? 1_555 58.4 ? 9 SG ? A CYS 64 ? A CYS 851 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 NE2 ? A HIS 77 ? A HIS 864 ? 1_555 66.8 ? 10 SG ? A CYS 59 ? A CYS 846 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 SG ? A CYS 83 ? A CYS 870 ? 1_555 107.1 ? 11 SG ? A CYS 64 ? A CYS 851 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 SG ? A CYS 83 ? A CYS 870 ? 1_555 93.5 ? 12 NE2 ? A HIS 77 ? A HIS 864 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 SG ? A CYS 83 ? A CYS 870 ? 1_555 56.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-06 2 'Structure model' 1 1 2013-12-25 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 3 'Structure model' '_struct_ref_seq_dif.details' 25 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_entry_details.entry_id 2MF8 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details 'FOR DOCKING, THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA.' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein-1 ? 0.2-1.0 mM '[U-13C; U-15N]' 1 DNA-2 ? 0.2-1.0 mM ? 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HE A ARG 821 ? ? H61 B DA 7 ? ? 1.16 2 1 "H1'" B DG 8 ? ? "H5'" B DT 9 ? ? 1.25 3 1 HE A ARG 865 ? ? H61 C DA 18 ? ? 1.29 4 1 "H2''" C DG 16 ? ? OP2 C DA 17 ? ? 1.55 5 1 "H2''" B DG 8 ? ? OP2 B DT 9 ? ? 1.58 6 1 HB3 A CYS 851 ? ? ZN A ZN 902 ? ? 1.58 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A LEU 828 ? ? CD1 A LEU 828 ? ? 1.933 1.514 0.419 0.037 N 2 1 CG A LEU 828 ? ? CD2 A LEU 828 ? ? 1.852 1.514 0.338 0.037 N 3 1 CA A ALA 829 ? ? CB A ALA 829 ? ? 1.682 1.520 0.162 0.021 N 4 1 CA A LYS 831 ? ? CB A LYS 831 ? ? 1.674 1.535 0.139 0.022 N 5 1 CB A LYS 831 ? ? CG A LYS 831 ? ? 1.759 1.521 0.238 0.027 N 6 1 CD A LYS 831 ? ? CE A LYS 831 ? ? 1.861 1.508 0.353 0.025 N 7 1 CA A SER 832 ? ? CB A SER 832 ? ? 1.617 1.525 0.092 0.015 N 8 1 CG A LEU 833 ? ? CD1 A LEU 833 ? ? 1.832 1.514 0.318 0.037 N 9 1 C A LEU 833 ? ? O A LEU 833 ? ? 1.399 1.229 0.170 0.019 N 10 1 CB A ARG 834 ? ? CG A ARG 834 ? ? 1.860 1.521 0.339 0.027 N 11 1 NE A ARG 834 ? ? CZ A ARG 834 ? ? 1.246 1.326 -0.080 0.013 N 12 1 C A ASN 835 ? ? O A ASN 835 ? ? 1.080 1.229 -0.149 0.019 N 13 1 CG A LEU 836 ? ? CD2 A LEU 836 ? ? 1.827 1.514 0.313 0.037 N 14 1 C A LEU 836 ? ? O A LEU 836 ? ? 1.358 1.229 0.129 0.019 N 15 1 C A LEU 836 ? ? N A MET 837 ? ? 1.082 1.336 -0.254 0.023 Y 16 1 CA A ALA 838 ? ? CB A ALA 838 ? ? 1.684 1.520 0.164 0.021 N 17 1 CA A ALA 839 ? ? CB A ALA 839 ? ? 1.691 1.520 0.171 0.021 N 18 1 C A ALA 839 ? ? N A HIS 840 ? ? 1.163 1.336 -0.173 0.023 Y 19 1 CA A SER 841 ? ? CB A SER 841 ? ? 1.707 1.525 0.182 0.015 N 20 1 C A ALA 842 ? ? O A ALA 842 ? ? 1.425 1.229 0.196 0.019 N 21 1 C A ALA 842 ? ? N A ASP 843 ? ? 1.035 1.336 -0.301 0.023 Y 22 1 CA A LEU 844 ? ? CB A LEU 844 ? ? 1.708 1.533 0.175 0.023 N 23 1 C A LEU 844 ? ? N A LYS 845 ? ? 0.984 1.336 -0.352 0.023 Y 24 1 CB A ARG 872 ? ? CG A ARG 872 ? ? 1.814 1.521 0.293 0.027 N 25 1 CG A ARG 872 ? ? CD A ARG 872 ? ? 1.693 1.515 0.178 0.025 N 26 1 CD A ARG 872 ? ? NE A ARG 872 ? ? 1.299 1.460 -0.161 0.017 N 27 1 NE A ARG 872 ? ? CZ A ARG 872 ? ? 1.220 1.326 -0.106 0.013 N 28 1 C A ARG 872 ? ? O A ARG 872 ? ? 1.053 1.229 -0.176 0.019 N 29 1 CA A ALA 873 ? ? CB A ALA 873 ? ? 1.686 1.520 0.166 0.021 N 30 1 C A ALA 873 ? ? O A ALA 873 ? ? 1.091 1.229 -0.138 0.019 N 31 1 "O3'" B DA 1 ? ? P B DC 2 ? ? 1.273 1.607 -0.334 0.012 Y 32 1 "O3'" B DC 2 ? ? P B DC 3 ? ? 1.458 1.607 -0.149 0.012 Y 33 1 "O3'" B DC 3 ? ? P B DG 4 ? ? 1.453 1.607 -0.154 0.012 Y 34 1 "O3'" B DG 4 ? ? P B DA 5 ? ? 1.514 1.607 -0.093 0.012 Y 35 1 "O3'" B DC 11 ? ? P B DA 12 ? ? 1.504 1.607 -0.103 0.012 Y 36 1 "O3'" B DA 12 ? ? P B DC 13 ? ? 1.271 1.607 -0.336 0.012 Y 37 1 "O3'" C DG 14 ? ? P C DT 15 ? ? 1.468 1.607 -0.139 0.012 Y 38 1 "O3'" C DT 15 ? ? P C DG 16 ? ? 1.265 1.607 -0.342 0.012 Y 39 1 "O3'" C DT 21 ? ? "C3'" C DT 21 ? ? 1.360 1.419 -0.059 0.006 N 40 1 "O3'" C DT 22 ? ? P C DC 23 ? ? 1.273 1.607 -0.334 0.012 Y 41 1 "O3'" C DC 23 ? ? P C DG 24 ? ? 1.454 1.607 -0.153 0.012 Y 42 1 "O3'" C DG 24 ? ? P C DG 25 ? ? 1.466 1.607 -0.141 0.012 Y 43 1 "O3'" C DG 25 ? ? P C DT 26 ? ? 1.469 1.607 -0.138 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 836 ? ? C A LEU 836 ? ? O A LEU 836 ? ? 107.37 120.10 -12.73 2.10 N 2 1 CA A ALA 842 ? ? C A ALA 842 ? ? O A ALA 842 ? ? 101.98 120.10 -18.12 2.10 N 3 1 "C3'" B DA 1 ? ? "O3'" B DA 1 ? ? P B DC 2 ? ? 98.73 119.70 -20.97 1.20 Y 4 1 "O3'" B DA 1 ? ? P B DC 2 ? ? OP2 B DC 2 ? ? 140.04 110.50 29.54 1.10 Y 5 1 "O3'" B DA 1 ? ? P B DC 2 ? ? OP1 B DC 2 ? ? 65.50 105.20 -39.70 2.20 Y 6 1 "C3'" B DC 2 ? ? "O3'" B DC 2 ? ? P B DC 3 ? ? 100.74 119.70 -18.96 1.20 Y 7 1 "O3'" B DC 2 ? ? P B DC 3 ? ? OP2 B DC 3 ? ? 134.91 110.50 24.41 1.10 Y 8 1 "O3'" B DC 2 ? ? P B DC 3 ? ? OP1 B DC 3 ? ? 65.92 105.20 -39.28 2.20 Y 9 1 "C3'" B DC 3 ? ? "O3'" B DC 3 ? ? P B DG 4 ? ? 101.53 119.70 -18.17 1.20 Y 10 1 "O3'" B DC 3 ? ? P B DG 4 ? ? OP2 B DG 4 ? ? 134.42 110.50 23.92 1.10 Y 11 1 "O3'" B DC 3 ? ? P B DG 4 ? ? OP1 B DG 4 ? ? 66.46 105.20 -38.74 2.20 Y 12 1 "C3'" B DG 4 ? ? "O3'" B DG 4 ? ? P B DA 5 ? ? 109.39 119.70 -10.31 1.20 Y 13 1 "O3'" B DG 4 ? ? P B DA 5 ? ? OP2 B DA 5 ? ? 125.75 110.50 15.25 1.10 Y 14 1 "O3'" B DG 4 ? ? P B DA 5 ? ? OP1 B DA 5 ? ? 77.77 105.20 -27.43 2.20 Y 15 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.21 108.30 1.91 0.30 N 16 1 "O3'" B DT 10 ? ? P B DC 11 ? ? OP2 B DC 11 ? ? 124.19 110.50 13.69 1.10 Y 17 1 "O3'" B DT 10 ? ? P B DC 11 ? ? OP1 B DC 11 ? ? 84.39 105.20 -20.81 2.20 Y 18 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DA 12 ? ? 110.31 119.70 -9.39 1.20 Y 19 1 "O3'" B DC 11 ? ? P B DA 12 ? ? OP2 B DA 12 ? ? 124.87 110.50 14.37 1.10 Y 20 1 "O3'" B DC 11 ? ? P B DA 12 ? ? OP1 B DA 12 ? ? 78.00 105.20 -27.20 2.20 Y 21 1 "C3'" B DA 12 ? ? "O3'" B DA 12 ? ? P B DC 13 ? ? 98.86 119.70 -20.84 1.20 Y 22 1 "O3'" B DA 12 ? ? P B DC 13 ? ? OP2 B DC 13 ? ? 139.92 110.50 29.42 1.10 Y 23 1 "O3'" B DA 12 ? ? P B DC 13 ? ? OP1 B DC 13 ? ? 65.46 105.20 -39.74 2.20 Y 24 1 "C3'" C DG 14 ? ? "O3'" C DG 14 ? ? P C DT 15 ? ? 108.66 119.70 -11.04 1.20 Y 25 1 "O3'" C DG 14 ? ? P C DT 15 ? ? OP2 C DT 15 ? ? 125.80 110.50 15.30 1.10 Y 26 1 "O3'" C DG 14 ? ? P C DT 15 ? ? OP1 C DT 15 ? ? 76.30 105.20 -28.90 2.20 Y 27 1 "C3'" C DT 15 ? ? "O3'" C DT 15 ? ? P C DG 16 ? ? 101.09 119.70 -18.61 1.20 Y 28 1 "O3'" C DT 15 ? ? P C DG 16 ? ? OP2 C DG 16 ? ? 138.34 110.50 27.84 1.10 Y 29 1 "O3'" C DT 15 ? ? P C DG 16 ? ? OP1 C DG 16 ? ? 66.19 105.20 -39.01 2.20 Y 30 1 "O3'" C DT 21 ? ? P C DT 22 ? ? OP2 C DT 22 ? ? 121.59 110.50 11.09 1.10 Y 31 1 "O3'" C DT 21 ? ? P C DT 22 ? ? OP1 C DT 22 ? ? 86.54 105.20 -18.66 2.20 Y 32 1 "C3'" C DT 22 ? ? "O3'" C DT 22 ? ? P C DC 23 ? ? 100.02 119.70 -19.68 1.20 Y 33 1 "O3'" C DT 22 ? ? P C DC 23 ? ? OP2 C DC 23 ? ? 139.03 110.50 28.53 1.10 Y 34 1 "O3'" C DT 22 ? ? P C DC 23 ? ? OP1 C DC 23 ? ? 65.47 105.20 -39.73 2.20 Y 35 1 "C3'" C DC 23 ? ? "O3'" C DC 23 ? ? P C DG 24 ? ? 101.55 119.70 -18.15 1.20 Y 36 1 "O3'" C DC 23 ? ? P C DG 24 ? ? OP2 C DG 24 ? ? 134.45 110.50 23.95 1.10 Y 37 1 "O3'" C DC 23 ? ? P C DG 24 ? ? OP1 C DG 24 ? ? 66.59 105.20 -38.61 2.20 Y 38 1 "C3'" C DG 24 ? ? "O3'" C DG 24 ? ? P C DG 25 ? ? 100.95 119.70 -18.75 1.20 Y 39 1 "O3'" C DG 24 ? ? P C DG 25 ? ? OP2 C DG 25 ? ? 135.30 110.50 24.80 1.10 Y 40 1 "O3'" C DG 24 ? ? P C DG 25 ? ? OP1 C DG 25 ? ? 66.38 105.20 -38.82 2.20 Y 41 1 "C3'" C DG 25 ? ? "O3'" C DG 25 ? ? P C DT 26 ? ? 108.66 119.70 -11.04 1.20 Y 42 1 "O3'" C DG 25 ? ? P C DT 26 ? ? OP2 C DT 26 ? ? 125.79 110.50 15.29 1.10 Y 43 1 "O3'" C DG 25 ? ? P C DT 26 ? ? OP1 C DT 26 ? ? 76.20 105.20 -29.00 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 818 ? ? -141.77 -40.48 2 1 SER A 822 ? ? -142.22 -132.88 3 1 SER A 824 ? ? -104.55 -79.42 4 1 LEU A 828 ? ? -72.51 -76.80 5 1 ASP A 830 ? ? 63.62 -168.53 6 1 LYS A 831 ? ? -143.56 15.44 7 1 SER A 832 ? ? 71.76 99.68 8 1 LEU A 833 ? ? -168.50 90.95 9 1 ARG A 834 ? ? -142.40 -87.14 10 1 ASN A 835 ? ? 45.22 -124.90 11 1 LEU A 836 ? ? -107.71 40.48 12 1 LYS A 845 ? ? -106.83 -162.72 13 1 ALA A 862 ? ? -140.60 -37.03 14 1 SER A 866 ? ? -147.55 -128.06 15 1 LEU A 867 ? ? -90.06 55.30 16 1 SER A 868 ? ? -106.84 -77.05 17 1 PRO A 871 ? ? -82.92 43.02 18 1 ARG A 872 ? ? 176.09 -173.29 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 LEU A 799 ? ? 11.03 2 1 LEU A 828 ? ? 11.26 3 1 ALA A 842 ? ? -17.92 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A LEU 836 ? ? N A MET 837 ? ? 1.08 2 1 C A ALA 839 ? ? N A HIS 840 ? ? 1.16 3 1 C A ALA 842 ? ? N A ASP 843 ? ? 1.03 4 1 C A LEU 844 ? ? N A LYS 845 ? ? 0.98 5 1 "O3'" B DA 1 ? ? P B DC 2 ? ? 1.27 6 1 "O3'" B DA 12 ? ? P B DC 13 ? ? 1.27 7 1 "O3'" C DT 15 ? ? P C DG 16 ? ? 1.26 8 1 "O3'" C DT 22 ? ? P C DC 23 ? ? 1.27 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 788 ? A GLY 1 2 1 Y 1 A PRO 789 ? A PRO 2 3 1 Y 1 A LEU 790 ? A LEU 3 4 1 Y 1 A GLY 791 ? A GLY 4 5 1 Y 1 A SER 792 ? A SER 5 6 1 Y 1 A PHE 793 ? A PHE 6 7 1 Y 1 A ASP 794 ? A ASP 7 8 1 Y 1 A ILE 795 ? A ILE 8 9 1 Y 1 A LYS 796 ? A LYS 9 10 1 Y 1 A LYS 797 ? A LYS 10 11 1 Y 1 A GLU 798 ? A GLU 11 12 1 Y 1 A LYS 874 ? A LYS 87 13 1 Y 1 A LYS 875 ? A LYS 88 14 1 Y 1 A SER 876 ? A SER 89 15 1 Y 1 A GLY 877 ? A GLY 90 16 1 Y 1 A LEU 878 ? A LEU 91 17 1 Y 1 A ARG 879 ? A ARG 92 18 1 Y 1 A VAL 880 ? A VAL 93 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MF8 'double helix' 2MF8 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 13 1_555 0.219 -0.063 0.017 -0.308 -1.830 -5.581 1 B_DA1:DT26_C B 1 ? C 26 ? 20 1 1 B DC 2 1_555 C DG 12 1_555 0.207 -0.174 0.016 -1.209 -1.300 -3.135 2 B_DC2:DG25_C B 2 ? C 25 ? 19 1 1 B DC 3 1_555 C DG 11 1_555 0.166 -0.126 0.018 -1.673 -0.354 -3.035 3 B_DC3:DG24_C B 3 ? C 24 ? 19 1 1 B DG 4 1_555 C DC 10 1_555 0.000 -0.074 0.024 -1.559 0.617 -2.943 4 B_DG4:DC23_C B 4 ? C 23 ? 19 1 1 B DA 5 1_555 C DT 9 1_555 0.250 -0.047 0.015 -0.715 1.420 -5.287 5 B_DA5:DT22_C B 5 ? C 22 ? 20 1 1 B DA 6 1_555 C DT 8 1_555 0.316 0.064 -0.011 0.315 -0.930 2.751 6 B_DA6:DT21_C B 6 ? C 21 ? 20 1 1 B DA 7 1_555 C DT 7 1_555 -0.388 -0.129 -0.113 0.133 1.751 -4.230 7 B_DA7:DT20_C B 7 ? C 20 ? 20 1 1 B DG 8 1_555 C DC 6 1_555 0.380 -0.001 -0.112 -0.956 2.462 -6.697 8 B_DG8:DC19_C B 8 ? C 19 ? 19 1 1 B DT 9 1_555 C DA 5 1_555 -0.333 -0.167 -0.071 0.568 2.438 2.091 9 B_DT9:DA18_C B 9 ? C 18 ? 20 1 1 B DT 10 1_555 C DA 4 1_555 -0.501 0.055 0.039 -0.261 -0.242 8.773 10 B_DT10:DA17_C B 10 ? C 17 ? 20 1 1 B DC 11 1_555 C DG 3 1_555 -0.188 -0.247 0.025 -1.130 1.439 0.071 11 B_DC11:DG16_C B 11 ? C 16 ? 19 1 1 B DA 12 1_555 C DT 2 1_555 -0.141 -0.005 0.043 0.096 1.780 -2.233 12 B_DA12:DT15_C B 12 ? C 15 ? 20 1 1 B DC 13 1_555 C DG 1 1_555 0.129 -0.067 0.042 1.527 1.247 0.098 13 B_DC13:DG14_C B 13 ? C 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 13 1_555 B DC 2 1_555 C DG 12 1_555 0.034 -0.278 3.358 0.619 -3.096 36.624 -0.006 0.033 3.370 -4.916 -0.982 36.755 1 BB_DA1DC2:DG25DT26_CC B 1 ? C 26 ? B 2 ? C 25 ? 1 B DC 2 1_555 C DG 12 1_555 B DC 3 1_555 C DG 11 1_555 -0.019 -0.249 3.371 -0.069 -3.060 35.884 0.047 0.020 3.380 -4.955 0.112 36.010 2 BB_DC2DC3:DG24DG25_CC B 2 ? C 25 ? B 3 ? C 24 ? 1 B DC 3 1_555 C DG 11 1_555 B DG 4 1_555 C DC 10 1_555 -0.001 -0.288 3.384 -0.028 -3.109 34.200 0.017 -0.003 3.396 -5.272 0.048 34.336 3 BB_DC3DG4:DC23DG24_CC B 3 ? C 24 ? B 4 ? C 23 ? 1 B DG 4 1_555 C DC 10 1_555 B DA 5 1_555 C DT 9 1_555 -0.040 -0.253 3.365 -0.550 -3.307 36.771 0.061 -0.014 3.374 -5.228 0.870 36.918 4 BB_DG4DA5:DT22DC23_CC B 4 ? C 23 ? B 5 ? C 22 ? 1 B DA 5 1_555 C DT 9 1_555 B DA 6 1_555 C DT 8 1_555 0.337 -0.120 3.419 1.084 -1.279 35.839 -0.003 -0.385 3.429 -2.077 -1.761 35.877 5 BB_DA5DA6:DT21DT22_CC B 5 ? C 22 ? B 6 ? C 21 ? 1 B DA 6 1_555 C DT 8 1_555 B DA 7 1_555 C DT 7 1_555 -0.912 -0.186 3.872 0.338 -8.321 35.103 1.105 1.531 3.808 -13.562 -0.552 36.047 6 BB_DA6DA7:DT20DT21_CC B 6 ? C 21 ? B 7 ? C 20 ? 1 B DA 7 1_555 C DT 7 1_555 B DG 8 1_555 C DC 6 1_555 0.553 0.252 3.305 -1.958 3.870 32.489 -0.225 -1.320 3.274 6.879 3.481 32.770 7 BB_DA7DG8:DC19DT20_CC B 7 ? C 20 ? B 8 ? C 19 ? 1 B DG 8 1_555 C DC 6 1_555 B DT 9 1_555 C DA 5 1_555 1.126 -1.014 4.114 -2.508 -13.299 31.043 1.077 -2.468 4.096 -23.498 4.431 33.798 8 BB_DG8DT9:DA18DC19_CC B 8 ? C 19 ? B 9 ? C 18 ? 1 B DT 9 1_555 C DA 5 1_555 B DT 10 1_555 C DA 4 1_555 0.550 -0.402 3.672 2.294 -5.389 35.741 0.215 -0.519 3.718 -8.708 -3.708 36.202 9 BB_DT9DT10:DA17DA18_CC B 9 ? C 18 ? B 10 ? C 17 ? 1 B DT 10 1_555 C DA 4 1_555 B DC 11 1_555 C DG 3 1_555 -0.880 0.135 3.473 1.021 -4.460 38.165 0.792 1.471 3.413 -6.791 -1.555 38.428 10 BB_DT10DC11:DG16DA17_CC B 10 ? C 17 ? B 11 ? C 16 ? 1 B DC 11 1_555 C DG 3 1_555 B DA 12 1_555 C DT 2 1_555 -0.057 -0.290 3.380 -0.648 -3.418 35.089 0.047 -0.006 3.393 -5.651 1.071 35.255 11 BB_DC11DA12:DT15DG16_CC B 11 ? C 16 ? B 12 ? C 15 ? 1 B DA 12 1_555 C DT 2 1_555 B DC 13 1_555 C DG 1 1_555 0.036 -0.275 3.353 0.636 -3.091 36.649 -0.003 0.033 3.365 -4.904 -1.010 36.780 12 BB_DA12DC13:DG14DT15_CC B 12 ? C 15 ? B 13 ? C 14 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #