data_2MFD # _entry.id 2MFD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MFD pdb_00002mfd 10.2210/pdb2mfd/pdb RCSB RCSB103561 ? ? BMRB 19545 ? ? WWPDB D_1000103561 ? ? # _pdbx_database_related.db_id 19545 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MFD _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-11 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ihle, Y.' 1 'Zell, R.' 2 'Gorlach, M.' 3 # _citation.id primary _citation.title 'The Solution Structure of a cGCUUAg RNA Pentaloop from Bovine Enterovirus Vir 404/03' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ihle, Y.' 1 ? primary 'Zell, R.' 2 ? primary 'Gorlach, M.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(P*GP*GP*CP*GP*UP*UP*CP*GP*CP*UP*UP*AP*GP*AP*AP*CP*GP*UP*C)-3'" _entity.formula_weight 6070.633 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details BEVSLD5 # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGUUCGCUUAGAACGUC _entity_poly.pdbx_seq_one_letter_code_can GGCGUUCGCUUAGAACGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 U n 1 7 C n 1 8 G n 1 9 C n 1 10 U n 1 11 U n 1 12 A n 1 13 G n 1 14 A n 1 15 A n 1 16 C n 1 17 G n 1 18 U n 1 19 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Bovine enterovirus type 1' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1248331 _pdbx_entity_src_syn.details 'RNA was prepared by in vitro transcription with T7 RNA polymerase' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2MFD _struct_ref.pdbx_db_accession 2MFD _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 55 _struct_ref.pdbx_seq_one_letter_code GGCGUUCGCUUAGAACGUC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MFD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2MFD _struct_ref_seq.db_align_beg 55 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 73 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 55 _struct_ref_seq.pdbx_auth_seq_align_end 73 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-13C HSQC aliphatic' 1 2 1 '2D 1H-13C HSQC aromatic' 1 3 1 '2D 1H-1H COSY' 1 4 1 '2D 1H-1H NOESY' 1 5 1 '2D DQF-COSY' 1 6 1 '2D 1H-1H TOCSY' 1 7 2 '2D HcncH + 2D HccH-COSY' 1 8 2 '2D HcnH + 2D HccH-TOCSY' 1 9 2 '3D HCCH-COSY' 1 10 2 '3D 1H-13C NOESY aliphatic' 1 11 2 '3D 1H-13C NOESY aromatic' 2 12 1 '2D 1H-1H NOESY' 2 13 2 '2D 1H-13C HSQC aliphatic' 2 14 2 '2D 1H-13C HSQC aromatic' 2 15 1 '2D 1H-1H TOCSY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 50 6.2 ambient ? 293 K 2 50 6.2 ambient ? 278 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1.1 mM BEVSLD5, 10 mM potassium phosphate, 40 mM potassium chloride, 0.2 mM EDTA, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.9 mM [U-100% 13C; U-100% 15N] BEVSLD5, 10 mM potassium phosphate, 40 mM potassium chloride, 0.2 mM EDTA, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 750 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MFD _pdbx_nmr_refine.method 'simulated annealing, distance geometry' _pdbx_nmr_refine.details 'refinement in water based on ARIA scripts' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MFD _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MFD _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 2.1 1 'Bruker Biospin' processing TopSpin 2.1 2 'Rochus Keller' 'chemical shift assignment' CARA 1.5.5 3 'Rochus Keller' 'peak picking' CARA 1.5.5 4 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 1.1 5 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.3 6 'Guntert, Mumenthaler and Wuthrich' refinement CYANA ? 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MFD _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MFD _struct.title 'The Solution Structure of a cGCUUAg RNA Pentaloop from Bovine Enterovirus Vir404/03' _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MFD _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;5'-NTR, cloverleaf, RNA ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 19 N3 ? ? A G 55 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 19 O2 ? ? A G 55 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 19 N4 ? ? A G 55 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 18 O2 ? ? A G 56 A U 72 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 18 N3 ? ? A G 56 A U 72 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 17 N1 ? ? A C 57 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 17 O6 ? ? A C 57 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 17 N2 ? ? A C 57 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 58 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 58 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 58 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 15 N1 ? ? A U 59 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 15 N6 ? ? A U 59 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 14 N1 ? ? A U 60 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 14 N6 ? ? A U 60 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 13 N1 ? ? A C 61 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 13 O6 ? ? A C 61 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 13 N2 ? ? A C 61 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 12 N1 ? ? A G 62 A A 66 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog20 hydrog ? ? A C 9 O2 ? ? ? 1_555 A A 12 N6 ? ? A C 63 A A 66 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2MFD _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 55 55 G G A . n A 1 2 G 2 56 56 G G A . n A 1 3 C 3 57 57 C C A . n A 1 4 G 4 58 58 G G A . n A 1 5 U 5 59 59 U U A . n A 1 6 U 6 60 60 U U A . n A 1 7 C 7 61 61 C C A . n A 1 8 G 8 62 62 G G A . n A 1 9 C 9 63 63 C C A . n A 1 10 U 10 64 64 U U A . n A 1 11 U 11 65 65 U U A . n A 1 12 A 12 66 66 A A A . n A 1 13 G 13 67 67 G G A . n A 1 14 A 14 68 68 A A A . n A 1 15 A 15 69 69 A A A . n A 1 16 C 16 70 70 C C A . n A 1 17 G 17 71 71 G G A . n A 1 18 U 18 72 72 U U A . n A 1 19 C 19 73 73 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-15 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id BEVSLD5-1 1.1 ? mM ? 1 'potassium phosphate-2' 10 ? mM ? 1 'potassium chloride-3' 40 ? mM ? 1 EDTA-4 0.2 ? mM ? 1 BEVSLD5-5 0.9 ? mM '[U-100% 13C; U-100% 15N]' 2 'potassium phosphate-6' 10 ? mM ? 2 'potassium chloride-7' 40 ? mM ? 2 EDTA-8 0.2 ? mM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MFD _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 36 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count 18 _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count 18 _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count 19 _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count 19 _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count 18 _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count 19 _pdbx_nmr_constraints.NA_other-angle_constraints_total_count 18 _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count 19 _pdbx_nmr_constraints.NOE_constraints_total 587 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 268 _pdbx_nmr_constraints.NOE_long_range_total_count 59 _pdbx_nmr_constraints.NOE_medium_range_total_count 17 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 243 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 6 _pdbx_validate_close_contact.auth_atom_id_1 "H4'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 U _pdbx_validate_close_contact.auth_seq_id_1 64 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 H6 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 U _pdbx_validate_close_contact.auth_seq_id_2 65 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.34 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MFD 'double helix' 2MFD 'a-form double helix' 2MFD 'hairpin loop' 2MFD 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 19 1_555 -0.643 -0.287 -0.293 4.775 9.271 -0.734 1 A_G55:C73_A A 55 ? A 73 ? 19 1 1 A G 2 1_555 A U 18 1_555 -2.110 -0.482 0.451 17.783 -9.228 -3.017 2 A_G56:U72_A A 56 ? A 72 ? 28 1 1 A C 3 1_555 A G 17 1_555 0.171 -0.182 0.014 4.159 -5.473 -1.624 3 A_C57:G71_A A 57 ? A 71 ? 19 1 1 A G 4 1_555 A C 16 1_555 0.047 -0.176 0.644 7.207 -11.786 -1.843 4 A_G58:C70_A A 58 ? A 70 ? 19 1 1 A U 5 1_555 A A 15 1_555 -0.097 -0.124 0.253 -8.476 -21.078 -7.992 5 A_U59:A69_A A 59 ? A 69 ? 20 1 1 A U 6 1_555 A A 14 1_555 0.053 -0.312 0.745 -2.374 -16.229 0.614 6 A_U60:A68_A A 60 ? A 68 ? 20 1 1 A C 7 1_555 A G 13 1_555 -0.307 -0.226 0.627 -4.081 -25.546 -6.038 7 A_C61:G67_A A 61 ? A 67 ? 19 1 1 A G 8 1_555 A A 12 1_555 4.249 2.517 -1.098 0.681 19.646 54.626 8 A_G62:A66_A A 62 ? A 66 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 19 1_555 A G 2 1_555 A U 18 1_555 0.591 -1.643 2.946 -8.053 6.168 29.764 -3.996 -2.345 2.331 11.591 15.135 31.408 1 AA_G55G56:U72C73_AA A 55 ? A 73 ? A 56 ? A 72 ? 1 A G 2 1_555 A U 18 1_555 A C 3 1_555 A G 17 1_555 -0.240 -1.328 3.647 -0.292 -0.789 50.918 -1.483 0.256 3.667 -0.917 0.340 50.924 2 AA_G56C57:G71U72_AA A 56 ? A 72 ? A 57 ? A 71 ? 1 A C 3 1_555 A G 17 1_555 A G 4 1_555 A C 16 1_555 0.022 -1.712 3.269 -3.059 -1.970 25.595 -3.270 -0.916 3.363 -4.417 6.861 25.848 3 AA_C57G58:C70G71_AA A 57 ? A 71 ? A 58 ? A 70 ? 1 A G 4 1_555 A C 16 1_555 A U 5 1_555 A A 15 1_555 -0.623 -1.709 3.974 5.713 -12.958 36.789 -0.550 1.802 4.183 -19.661 -8.667 39.333 4 AA_G58U59:A69C70_AA A 58 ? A 70 ? A 59 ? A 69 ? 1 A U 5 1_555 A A 15 1_555 A U 6 1_555 A A 14 1_555 0.689 -1.423 3.231 -3.083 -10.106 27.865 -0.542 -2.021 3.432 -20.094 6.129 29.764 5 AA_U59U60:A68A69_AA A 59 ? A 69 ? A 60 ? A 68 ? 1 A U 6 1_555 A A 14 1_555 A C 7 1_555 A G 13 1_555 -0.341 -1.054 3.423 1.118 -13.431 37.936 0.149 0.636 3.569 -19.909 -1.657 40.176 6 AA_U60C61:G67A68_AA A 60 ? A 68 ? A 61 ? A 67 ? 1 A C 7 1_555 A G 13 1_555 A G 8 1_555 A A 12 1_555 2.766 -1.049 4.805 -2.718 -40.485 35.082 3.101 -3.378 3.873 -50.696 3.403 53.151 7 AA_C61G62:A66G67_AA A 61 ? A 67 ? A 62 ? A 66 ? #