HEADER ALLERGEN 15-OCT-13 2MFJ TITLE SOLUTION STRUCTURE OF BLO T 19, A MINOR DUST MITE ALLERGEN FROM BLOMIA TITLE 2 TROPICALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLO T 19; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLOMIA TROPICALIS; SOURCE 3 ORGANISM_TAXID: 40697; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX4T-1 KEYWDS ALLERGEN, ANTI-MICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.T.NAIK,N.NAIK,T.HUANG REVDAT 2 14-JUN-23 2MFJ 1 REMARK REVDAT 1 19-NOV-14 2MFJ 0 JRNL AUTH M.NAIK,N.NAIK,I.KUO,Y.LIAO,T.HUANG JRNL TITL SOLUTION STRUCTURE OF BLO 1 19 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0, X-PLOR NIH 2.34, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL STRUCTURE ENSEMBLE WAS REMARK 3 CALCULATED BY SEMI-AUTOMATED NOESY ASSIGNMENT BY CYANA. THE REMARK 3 ASSIGNMENTS WERE MANUALLY VERIFIED IN SPARKY AND FINAL STRUCTURE REMARK 3 ANNEALING WAS PERFORMED IN CYANA. STRUCTURE AND RESTRAINTS FROM REMARK 3 CYANA WERE IMPORTED IN XPLOR-NIH FOR EXPLICIT WATER REFINEMENT. REMARK 4 REMARK 4 2MFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000103567. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 BLO T 19-1, 50 MM POTASSIUM REMARK 210 PHOSPHATE-2, 100 MM SODIUM REMARK 210 CHLORIDE-3, 90% H2O/10% D2O; 1 REMARK 210 MM [U-100% 15N] BLO T 19-4, 50 REMARK 210 MM POTASSIUM PHOSPHATE-5, 100 MM REMARK 210 SODIUM CHLORIDE-6, 90% H2O/10% REMARK 210 D2O; 1 MM BLO T 19-7, 50 MM REMARK 210 POTASSIUM PHOSPHATE-8, 100 MM REMARK 210 SODIUM CHLORIDE-9, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 15N] BLO T 19- REMARK 210 10, 50 MM POTASSIUM PHOSPHATE-11, REMARK 210 100 MM SODIUM CHLORIDE-12, 15 REMARK 210 MG/ML PF1 PHAGE-13, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HN(CA)CO; 3D HNCA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNHA; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 2D-HBCBCGCDHD; 2D- REMARK 210 HBCBCGCDCEHE; 2D-TOCSY; 3D 1H- REMARK 210 15N TOCSY; 2D 1H-1H NOESY; 3D 1H- REMARK 210 13C NOESYHSQC; 3D 1H-15N REMARK 210 NOESYHSQC; 2D 1H-15N IPAP HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ; 850 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, SPARKY, CYANA 3.9, REMARK 210 PSVS 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, DGSA REMARK 210 -DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NMR DATA WAS ACQUIRED AT 295K USING SHIGEMI NMR TUBES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 64 87.13 59.36 REMARK 500 2 PRO A 47 98.93 -69.85 REMARK 500 2 ASN A 63 10.56 -145.84 REMARK 500 2 LEU A 64 80.67 62.11 REMARK 500 3 LEU A 64 123.41 68.60 REMARK 500 3 PRO A 65 174.21 -51.02 REMARK 500 3 SER A 66 89.23 -161.12 REMARK 500 4 ASN A 34 46.04 71.26 REMARK 500 4 LEU A 64 92.25 53.52 REMARK 500 5 ASN A 34 32.09 71.23 REMARK 500 5 LEU A 64 98.16 64.27 REMARK 500 5 SER A 66 38.97 -83.46 REMARK 500 6 ASN A 34 48.54 70.75 REMARK 500 6 PRO A 47 97.09 -67.89 REMARK 500 7 ASN A 34 32.77 70.20 REMARK 500 7 TRP A 61 80.03 -154.38 REMARK 500 7 LEU A 64 86.58 71.78 REMARK 500 8 GLU A 60 -22.36 -163.36 REMARK 500 8 LEU A 64 85.85 70.76 REMARK 500 9 ASN A 34 31.71 71.13 REMARK 500 9 LEU A 64 86.52 54.57 REMARK 500 10 ASN A 34 42.19 71.75 REMARK 500 10 ASN A 56 76.95 -100.41 REMARK 500 10 TRP A 61 89.80 -155.73 REMARK 500 10 LEU A 64 93.74 66.79 REMARK 500 11 PRO A 62 87.51 -62.36 REMARK 500 11 LEU A 64 93.56 65.04 REMARK 500 12 SER A 2 27.17 49.37 REMARK 500 12 ASN A 34 36.72 70.21 REMARK 500 12 ASN A 56 78.10 57.82 REMARK 500 12 LEU A 64 86.93 70.27 REMARK 500 13 ASN A 34 42.42 70.16 REMARK 500 13 PRO A 47 97.30 -60.16 REMARK 500 13 LEU A 64 89.91 54.20 REMARK 500 14 ASN A 56 -153.77 -96.70 REMARK 500 14 LEU A 64 80.10 62.60 REMARK 500 14 ARG A 67 -65.88 -94.43 REMARK 500 15 ASN A 34 38.72 70.13 REMARK 500 15 TRP A 61 63.81 -162.18 REMARK 500 15 LEU A 64 107.31 71.73 REMARK 500 16 ASN A 34 49.08 71.08 REMARK 500 16 LEU A 64 71.39 57.84 REMARK 500 17 ASN A 63 13.60 -142.58 REMARK 500 17 LEU A 64 84.53 60.29 REMARK 500 18 ASN A 34 49.36 70.09 REMARK 500 18 LEU A 64 105.57 68.46 REMARK 500 18 PRO A 65 34.44 -76.41 REMARK 500 19 ASN A 56 -53.58 -132.41 REMARK 500 19 LEU A 64 89.04 64.66 REMARK 500 20 ASN A 34 37.63 71.42 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19552 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST TWO RESIDUES (GS) ARE EXPRESSION TAGS. DBREF 2MFJ A 1 68 PDB 2MFJ 2MFJ 1 68 SEQRES 1 A 68 GLY SER ALA LEU ASP PHE THR SER CYS ALA ARG MET ASN SEQRES 2 A 68 ASP GLY ALA LEU GLY ALA LYS VAL ALA GLN ALA ALA CYS SEQRES 3 A 68 ILE SER SER CYS LYS PHE GLN ASN CYS GLY THR GLY HIS SEQRES 4 A 68 CYS GLU ARG ARG GLY GLY ARG PRO THR CYS VAL CYS SER SEQRES 5 A 68 ARG CYS GLY ASN GLY GLY GLY GLU TRP PRO ASN LEU PRO SEQRES 6 A 68 SER ARG GLY HELIX 1 1 CYS A 9 ASN A 13 5 5 HELIX 2 2 ASP A 14 GLN A 33 1 20 SHEET 1 A 2 CYS A 35 ARG A 43 0 SHEET 2 A 2 ARG A 46 CYS A 54 -1 O ARG A 53 N GLY A 36 SSBOND 1 CYS A 9 CYS A 40 1555 1555 2.03 SSBOND 2 CYS A 26 CYS A 49 1555 1555 2.03 SSBOND 3 CYS A 30 CYS A 51 1555 1555 2.03 SSBOND 4 CYS A 35 CYS A 54 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1