HEADER ALLERGEN 15-OCT-13 2MFK TITLE NMR SOLUTION STRUCTURE OF CHITIN-BINDING DOMAIN FROM DUST MITE GROUP TITLE 2 XII ALLERGEN BLO T 12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLO 1 12; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CHITIN-BINDING DOMAIN (CBD); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLOMIA TROPICALIS; SOURCE 3 ORGANISM_TAXID: 40697; SOURCE 4 GENE: BLO T 12.0102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX6P-3 KEYWDS ALLERGEN, CHITIN-BINDING DOMAIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.T.NAIK,C.C.-H.KUNG,T.HUANG REVDAT 2 14-JUN-23 2MFK 1 REMARK REVDAT 1 19-NOV-14 2MFK 0 JRNL AUTH M.T.NAIK,C.C.-H.KUNG,T.HUANG JRNL TITL SOLUTION STRUCTURE OF BLO 1 12 CBD DOMAIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0, X-PLOR NIH 2.34, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: INITIAL STRUCTURE ENSEMBLE WAS REMARK 3 CALCULATED BY SEMI-AUTOMATED NOESY ASSIGNMENT BY CYANA. THE REMARK 3 ASSIGNMENTS WERE MANUALLY VERIFIED IN SPARKY AND FINAL STRUCTURE REMARK 3 ANNEALING WAS PERFORMED IN CYANA. STRUCTURE AND RESTRAINTS FROM REMARK 3 CYANA WERE IMPORTED IN XPLOR-NIH FOR EXPLICIT WATER REFINEMENT. REMARK 4 REMARK 4 2MFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000103568. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 BLO T 12 CBD-1, 50 MM POTASSIUM REMARK 210 PHOSPHATE-2, 100 MM SODIUM REMARK 210 CHLORIDE-3, 90% H2O/10% D2O; 1 REMARK 210 MM [U-100% 15N] BLO T 12 CBD-4, REMARK 210 50 MM POTASSIUM PHOSPHATE-5, 100 REMARK 210 MM SODIUM CHLORIDE-6, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 15N] BLO T 12 REMARK 210 CBD-7, 50 MM POTASSIUM PHOSPHATE- REMARK 210 8, 100 MM SODIUM CHLORIDE-9, 11 REMARK 210 MG/ML PF1 PHAGE-10, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 CCCONH; 3D HCCH-COSY; 3D HBHA(CO) REMARK 210 NH; 2D-HBCBCGCDHD; 3D 1H-13C REMARK 210 NOESYHSQC; 3D 1H-15N NOESYHSQC; REMARK 210 2D 1H-15N IPAP HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, SPARKY, CYANA 3.9, REMARK 210 PSVS 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, DGSA REMARK 210 -DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NMR DATA WAS ACQUIRED AT 295K USING SHIGEMI NMR TUBES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 PRO A 76 99.83 -65.62 REMARK 500 2 ASP A 80 104.80 -160.14 REMARK 500 3 ASP A 80 94.57 -161.80 REMARK 500 3 ARG A 137 51.02 70.73 REMARK 500 4 LEU A 77 136.73 -173.04 REMARK 500 4 ASN A 105 102.04 -167.32 REMARK 500 5 PRO A 76 34.57 -76.51 REMARK 500 5 LEU A 77 33.99 -88.52 REMARK 500 5 SER A 115 79.81 -108.23 REMARK 500 5 ARG A 137 41.91 74.62 REMARK 500 7 SER A 115 77.98 -102.15 REMARK 500 8 ASN A 105 105.31 -167.63 REMARK 500 8 ARG A 137 48.60 72.25 REMARK 500 9 ARG A 137 46.21 71.31 REMARK 500 10 ASN A 105 117.70 -168.88 REMARK 500 10 ARG A 137 41.52 73.11 REMARK 500 11 ARG A 137 48.83 71.21 REMARK 500 12 ASN A 105 87.30 -163.84 REMARK 500 12 ARG A 137 41.57 70.76 REMARK 500 14 ASN A 105 106.89 -167.40 REMARK 500 15 PRO A 76 44.11 -78.46 REMARK 500 15 ASN A 105 104.21 -169.23 REMARK 500 16 ASN A 105 97.47 -168.07 REMARK 500 17 ASN A 105 101.86 -168.24 REMARK 500 18 ASP A 80 113.21 -164.44 REMARK 500 18 ARG A 137 43.22 70.33 REMARK 500 19 ASN A 105 109.85 -169.15 REMARK 500 19 ARG A 137 62.87 66.81 REMARK 500 20 ARG A 137 62.02 66.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19553 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST FIVE RESIDUES (GPLGS) ARE EXPRESSION TAGS DBREF 2MFK A 75 143 PDB 2MFK 2MFK 75 143 SEQRES 1 A 69 GLY PRO LEU GLY SER ASP LEU ILE VAL HIS GLU GLY GLY SEQRES 2 A 69 LYS THR TYR HIS VAL VAL CYS HIS GLU GLU GLY PRO ILE SEQRES 3 A 69 PRO HIS PRO GLY ASN VAL HIS LYS TYR ILE ILE CYS SER SEQRES 4 A 69 LYS SER GLY SER LEU TRP TYR ILE THR VAL MET PRO CYS SEQRES 5 A 69 SER ILE GLY THR LYS PHE ASP PRO ILE SER ARG ASN CYS SEQRES 6 A 69 VAL LEU ASP ASN SHEET 1 A 2 ASP A 80 GLU A 85 0 SHEET 2 A 2 LYS A 88 VAL A 93 -1 O LYS A 88 N GLU A 85 SHEET 1 B 3 GLY A 98 PRO A 101 0 SHEET 2 B 3 LYS A 108 SER A 115 -1 O ILE A 110 N ILE A 100 SHEET 3 B 3 LEU A 118 PRO A 125 -1 O MET A 124 N TYR A 109 SHEET 1 C 2 THR A 130 ASP A 133 0 SHEET 2 C 2 ASN A 138 LEU A 141 -1 O VAL A 140 N LYS A 131 SSBOND 1 CYS A 94 CYS A 112 1555 1555 2.03 SSBOND 2 CYS A 126 CYS A 139 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1