HEADER MEMBRANE PROTEIN 03-NOV-13 2MGP TITLE STRUCTURE OF PLASMODIUM YOELII MEROZOITE SURFACE PROTEIN 1 - C- TITLE 2 TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEROZOITE SURFACE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 1656-1754; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM YOELII YOELII; SOURCE 3 ORGANISM_TAXID: 73239; SOURCE 4 GENE: MSP-1; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPIC9K KEYWDS MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.D.CURD,B.BIRDSALL,M.KADEKOPPALA,S.OGUN,G.KELLY,A.A.HOLDER REVDAT 2 14-JUN-23 2MGP 1 REMARK SEQADV REVDAT 1 12-FEB-14 2MGP 0 JRNL AUTH R.D.CURD,B.BIRDSALL,M.KADEKOPPALA,S.A.OGUN,G.KELLY, JRNL AUTH 2 A.A.HOLDER JRNL TITL THE STRUCTURE OF PLASMODIUM YOELII MEROZOITE SURFACE PROTEIN JRNL TITL 2 119, ANTIBODY SPECIFICITY AND IMPLICATIONS FOR MALARIA JRNL TITL 3 VACCINE DESIGN JRNL REF OPEN BIOLOGY V. 4 30091 2014 JRNL REFN ESSN 2046-2441 JRNL PMID 24403012 JRNL DOI 10.1098/RSOB.130091 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 7.3, ARIA/CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STANDARD SA PROTOCOL USING ARIA WITH REMARK 3 FINAL WATER REFINEMENT REMARK 4 REMARK 4 2MGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000103595. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 75 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 MSP1_19-1, 25 MM POTASSIUM REMARK 210 PHOSPHATE-2, 50 MM POTASSIUM REMARK 210 CHLORIDE-3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3, ARIA/CNS 2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 ASP A 60 HA PHE A 94 1.17 REMARK 500 HB2 CYS A 8 HA PHE A 21 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 -2.47 -40.79 REMARK 500 1 LYS A 5 16.78 -64.95 REMARK 500 1 VAL A 7 -160.16 49.81 REMARK 500 1 THR A 11 110.40 30.34 REMARK 500 1 ARG A 12 -67.95 -7.56 REMARK 500 1 GLU A 40 50.41 -93.25 REMARK 500 1 ASN A 48 -8.66 64.91 REMARK 500 1 ASP A 53 -51.56 146.62 REMARK 500 1 TYR A 90 -115.43 66.58 REMARK 500 1 SER A 97 78.41 -107.04 REMARK 500 1 SER A 98 25.60 -170.97 REMARK 500 2 PRO A 4 -17.72 -42.91 REMARK 500 2 HIS A 6 21.73 -73.75 REMARK 500 2 VAL A 7 -154.22 45.10 REMARK 500 2 THR A 11 157.45 55.39 REMARK 500 2 ASN A 48 -4.47 63.26 REMARK 500 2 ASP A 53 -58.49 148.29 REMARK 500 2 TYR A 90 -131.51 68.36 REMARK 500 2 SER A 98 41.06 -155.94 REMARK 500 3 VAL A 2 -177.14 175.85 REMARK 500 3 ASP A 3 109.02 -47.13 REMARK 500 3 PRO A 4 -1.45 -51.28 REMARK 500 3 VAL A 7 158.77 53.09 REMARK 500 3 THR A 11 168.63 63.84 REMARK 500 3 ASN A 42 42.21 -104.90 REMARK 500 3 ASN A 48 -18.95 72.27 REMARK 500 3 ASP A 53 -48.17 146.32 REMARK 500 3 TYR A 90 -118.88 68.82 REMARK 500 3 SER A 98 47.44 166.95 REMARK 500 4 PRO A 4 -1.32 -36.82 REMARK 500 4 LYS A 5 13.33 -69.25 REMARK 500 4 VAL A 7 -152.37 44.94 REMARK 500 4 THR A 11 164.81 56.62 REMARK 500 4 ASN A 42 55.81 -104.57 REMARK 500 4 ASN A 48 -10.89 66.68 REMARK 500 4 ASP A 53 -52.07 149.49 REMARK 500 4 ASN A 55 -54.63 70.58 REMARK 500 4 ASN A 56 45.17 162.83 REMARK 500 4 TYR A 90 -118.52 67.93 REMARK 500 5 VAL A 2 -178.60 -177.46 REMARK 500 5 PRO A 4 -15.30 -46.45 REMARK 500 5 VAL A 7 -156.58 47.95 REMARK 500 5 THR A 11 114.68 30.57 REMARK 500 5 ARG A 12 -34.37 -39.46 REMARK 500 5 ASP A 53 -48.84 144.97 REMARK 500 5 TYR A 90 -128.34 66.55 REMARK 500 5 SER A 98 58.07 73.23 REMARK 500 6 VAL A 2 -170.88 -179.44 REMARK 500 6 PRO A 4 -4.62 -51.80 REMARK 500 6 VAL A 7 -160.44 50.37 REMARK 500 REMARK 500 THIS ENTRY HAS 204 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19233 RELATED DB: BMRB REMARK 900 RELATED ID: 2MGR RELATED DB: PDB DBREF 2MGP A 1 99 UNP P13828 MSP1_PLAYO 1656 1754 SEQADV 2MGP ASP A 25 UNP P13828 ASN 1680 ENGINEERED MUTATION SEQRES 1 A 99 GLY VAL ASP PRO LYS HIS VAL CYS VAL ASP THR ARG ASP SEQRES 2 A 99 ILE PRO LYS ASN ALA GLY CYS PHE ARG ASP ASP ASP GLY SEQRES 3 A 99 THR GLU GLU TRP ARG CYS LEU LEU GLY TYR LYS LYS GLY SEQRES 4 A 99 GLU GLY ASN THR CYS VAL GLU ASN ASN ASN PRO THR CYS SEQRES 5 A 99 ASP ILE ASN ASN GLY GLY CYS ASP PRO THR ALA SER CYS SEQRES 6 A 99 GLN ASN ALA GLU SER THR GLU ASN SER LYS LYS ILE ILE SEQRES 7 A 99 CYS THR CYS LYS GLU PRO THR PRO ASN ALA TYR TYR GLU SEQRES 8 A 99 GLY VAL PHE CYS SER SER SER SER HELIX 1 1 ILE A 54 CYS A 59 1 6 SHEET 1 A 2 ALA A 18 ARG A 22 0 SHEET 2 A 2 GLU A 28 CYS A 32 -1 O GLU A 29 N PHE A 21 SHEET 1 B 2 TYR A 36 LYS A 38 0 SHEET 2 B 2 CYS A 44 GLU A 46 -1 O VAL A 45 N LYS A 37 SHEET 1 C 2 ALA A 63 ASN A 67 0 SHEET 2 C 2 ILE A 77 CYS A 81 -1 O THR A 80 N SER A 64 SHEET 1 D 2 ALA A 88 TYR A 89 0 SHEET 2 D 2 PHE A 94 CYS A 95 -1 O PHE A 94 N TYR A 89 SSBOND 1 CYS A 8 CYS A 20 1555 1555 2.04 SSBOND 2 CYS A 32 CYS A 44 1555 1555 2.02 SSBOND 3 CYS A 52 CYS A 65 1555 1555 2.03 SSBOND 4 CYS A 59 CYS A 79 1555 1555 2.03 SSBOND 5 CYS A 81 CYS A 95 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1