HEADER HISTOCOMPATIBILITY ANTIGEN 21-JUL-93 2MHA TITLE CRYSTAL STRUCTURE OF THE MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I H- TITLE 2 2KB MOLECULE CONTAINING A SINGLE VIRAL PEPTIDE: IMPLICATIONS FOR TITLE 3 PEPTIDE BINDING AND T-CELL RECEPTOR RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS I HISTOCOMPATIBILITY ANTIGEN (H-2KB) (ALPHA CHAIN); COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA 2-MICROGLOBULIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VIRAL OCTAPEPTIDE ARG-GLY-TYR-VAL-TYR-GLN-GLY-LEU; COMPND 11 CHAIN: E, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: UNIDENTIFIED; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: VESICULAR STOMATITIS VIRUS; SOURCE 15 ORGANISM_TAXID: 11276 KEYWDS HISTOCOMPATIBILITY ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHANG,A.C.M.YOUNG,M.IMARAI,S.G.NATHENSON,J.C.SACCHETTINI REVDAT 5 14-AUG-19 2MHA 1 REMARK REVDAT 4 17-JUL-19 2MHA 1 REMARK REVDAT 3 24-FEB-09 2MHA 1 VERSN REVDAT 2 01-APR-03 2MHA 1 JRNL REVDAT 1 31-OCT-93 2MHA 0 JRNL AUTH W.ZHANG,A.C.YOUNG,M.IMARAI,S.G.NATHENSON,J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURE OF THE MAJOR HISTOCOMPATIBILITY COMPLEX JRNL TITL 2 CLASS I H-2KB MOLECULE CONTAINING A SINGLE VIRAL PEPTIDE: JRNL TITL 3 IMPLICATIONS FOR PEPTIDE BINDING AND T-CELL RECEPTOR JRNL TITL 4 RECOGNITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 89 8403 1992 JRNL REFN ISSN 0027-8424 JRNL PMID 1325657 JRNL DOI 10.1073/PNAS.89.17.8403 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MHA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.10000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 32 CD GLU A 32 OE1 0.068 REMARK 500 GLU A 41 CD GLU A 41 OE1 0.070 REMARK 500 GLU A 222 CD GLU A 222 OE2 0.075 REMARK 500 GLU A 229 CD GLU A 229 OE1 0.069 REMARK 500 GLU A 232 CA GLU A 232 CB 0.404 REMARK 500 GLU A 254 CD GLU A 254 OE1 0.069 REMARK 500 CYS A 259 CA CYS A 259 CB -0.078 REMARK 500 CYS A 259 CB CYS A 259 SG -0.104 REMARK 500 GLU B 36 CD GLU B 36 OE2 0.068 REMARK 500 GLU B 69 CD GLU B 69 OE2 0.071 REMARK 500 GLU C 19 CD GLU C 19 OE2 0.073 REMARK 500 GLU C 46 CD GLU C 46 OE2 0.068 REMARK 500 GLU C 53 CD GLU C 53 OE1 0.076 REMARK 500 GLU C 55 CD GLU C 55 OE1 0.071 REMARK 500 GLU C 58 CD GLU C 58 OE1 0.070 REMARK 500 GLU C 102 CD GLU C 102 OE2 0.069 REMARK 500 GLU C 232 CD GLU C 232 OE1 0.066 REMARK 500 LEU C 270 CA LEU C 270 C 0.160 REMARK 500 GLU D 50 CD GLU D 50 OE2 0.067 REMARK 500 GLY F 7 N GLY F 7 CA -0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 PRO A 15 C - N - CD ANGL. DEV. = -13.0 DEGREES REMARK 500 ASP A 106 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 106 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 122 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 137 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 THR A 143 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 CYS A 203 CA - CB - SG ANGL. DEV. = -12.1 DEGREES REMARK 500 GLU A 232 C - N - CA ANGL. DEV. = -27.2 DEGREES REMARK 500 GLU A 232 N - CA - CB ANGL. DEV. = -14.1 DEGREES REMARK 500 GLU A 232 CA - CB - CG ANGL. DEV. = 23.4 DEGREES REMARK 500 ASP A 238 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 238 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 CYS A 259 CA - CB - SG ANGL. DEV. = -19.9 DEGREES REMARK 500 PRO B 14 C - N - CD ANGL. DEV. = -23.1 DEGREES REMARK 500 ASP B 53 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 59 N - CA - CB ANGL. DEV. = 11.1 DEGREES REMARK 500 ASP B 59 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B 59 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG C 14 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR C 45 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG C 62 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 62 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP C 119 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP C 119 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ASP C 122 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 122 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP C 129 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 137 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP C 137 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 GLY C 151 C - N - CA ANGL. DEV. = -18.8 DEGREES REMARK 500 ASP C 183 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 183 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 PRO C 195 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO C 195 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 THR C 216 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 ASN D 17 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 TRP D 60 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP D 85 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 TYR D 94 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 TYR D 94 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG E 1 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLN F 6 CA - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 5 67.92 -159.31 REMARK 500 ARG A 14 63.63 -113.20 REMARK 500 PRO A 20 137.80 -32.84 REMARK 500 ASP A 29 -111.03 70.73 REMARK 500 ASP A 37 101.96 -167.52 REMARK 500 SER A 38 3.78 -55.59 REMARK 500 ASP A 39 53.06 -109.61 REMARK 500 GLU A 41 -61.57 -22.32 REMARK 500 PRO A 43 88.73 -63.99 REMARK 500 TYR A 45 79.59 -118.47 REMARK 500 PRO A 47 -172.98 -48.28 REMARK 500 ARG A 48 140.55 165.81 REMARK 500 ALA A 49 133.72 62.86 REMARK 500 GLU A 53 13.17 -65.18 REMARK 500 PRO A 57 -17.36 -48.82 REMARK 500 ARG A 75 -6.02 -47.12 REMARK 500 SER A 105 18.48 -64.87 REMARK 500 ASP A 106 -10.54 -150.56 REMARK 500 ARG A 108 -158.41 -148.09 REMARK 500 GLN A 114 96.57 -166.86 REMARK 500 ASP A 119 72.96 56.74 REMARK 500 CYS A 121 138.21 153.50 REMARK 500 TYR A 123 -77.37 -110.69 REMARK 500 GLU A 128 -53.93 16.18 REMARK 500 ASP A 129 60.55 -64.77 REMARK 500 LEU A 130 59.54 -28.94 REMARK 500 LYS A 131 -34.86 -158.27 REMARK 500 MET A 138 -28.86 -33.76 REMARK 500 HIS A 145 22.19 -68.41 REMARK 500 LYS A 146 -44.32 -141.93 REMARK 500 LEU A 160 -73.47 -67.42 REMARK 500 VAL A 165 -62.95 -98.54 REMARK 500 LEU A 168 -38.18 -38.22 REMARK 500 LYS A 173 -39.80 -173.88 REMARK 500 ASN A 176 -83.07 -60.81 REMARK 500 THR A 178 -53.44 -155.27 REMARK 500 LEU A 179 17.80 -62.75 REMARK 500 LEU A 180 172.29 177.97 REMARK 500 ARG A 181 89.27 112.15 REMARK 500 ARG A 194 70.90 -155.09 REMARK 500 GLU A 196 2.45 53.64 REMARK 500 PRO A 210 173.43 -56.28 REMARK 500 ASN A 220 68.20 24.57 REMARK 500 ILE A 225 -106.65 -125.16 REMARK 500 GLN A 226 73.87 -33.87 REMARK 500 ASP A 227 -9.83 168.13 REMARK 500 VAL A 248 73.36 -101.48 REMARK 500 LYS A 253 47.78 -74.75 REMARK 500 TYR A 256 1.59 -62.96 REMARK 500 GLN A 264 -1.22 -43.25 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 194 PRO A 195 -46.30 REMARK 500 GLU A 232 THR A 233 -142.13 REMARK 500 PRO C 195 GLU C 196 116.48 REMARK 500 TYR C 209 PRO C 210 41.91 REMARK 500 HIS D 31 PRO D 32 30.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 157 0.09 SIDE CHAIN REMARK 500 PHE B 56 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 4 -10.73 REMARK 500 ARG A 194 -10.65 REMARK 500 ASP A 197 -11.79 REMARK 500 CYS A 203 -11.98 REMARK 500 GLU A 232 23.96 REMARK 500 PRO A 235 -12.48 REMARK 500 ASN C 42 10.07 REMARK 500 LEU C 82 -11.37 REMARK 500 GLU C 102 10.51 REMARK 500 PRO C 195 13.11 REMARK 500 ASP C 197 -11.04 REMARK 500 TYR C 209 14.07 REMARK 500 HIS D 31 10.11 REMARK 500 REMARK 500 REMARK: NULL DBREF 2MHA A 1 270 UNP P01901 HA1B_MOUSE 22 291 DBREF 2MHA B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 2MHA C 1 270 UNP P01901 HA1B_MOUSE 22 291 DBREF 2MHA D 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 2MHA E 1 8 UNP P11212 NCAP_VSVIG 52 59 DBREF 2MHA F 1 8 UNP P11212 NCAP_VSVIG 52 59 SEQRES 1 A 270 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 A 270 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 A 270 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 270 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 A 270 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 A 270 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 A 270 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 A 270 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 A 270 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 A 270 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 270 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 A 270 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 A 270 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 270 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 A 270 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 A 270 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 270 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 A 270 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 270 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 A 270 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 A 270 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 270 GLY PRO HIS SER LEU ARG TYR PHE VAL THR ALA VAL SER SEQRES 2 C 270 ARG PRO GLY LEU GLY GLU PRO ARG TYR MET GLU VAL GLY SEQRES 3 C 270 TYR VAL ASP ASP THR GLU PHE VAL ARG PHE ASP SER ASP SEQRES 4 C 270 ALA GLU ASN PRO ARG TYR GLU PRO ARG ALA ARG TRP MET SEQRES 5 C 270 GLU GLN GLU GLY PRO GLU TYR TRP GLU ARG GLU THR GLN SEQRES 6 C 270 LYS ALA LYS GLY ASN GLU GLN SER PHE ARG VAL ASP LEU SEQRES 7 C 270 ARG THR LEU LEU GLY TYR TYR ASN GLN SER LYS GLY GLY SEQRES 8 C 270 SER HIS THR ILE GLN VAL ILE SER GLY CYS GLU VAL GLY SEQRES 9 C 270 SER ASP GLY ARG LEU LEU ARG GLY TYR GLN GLN TYR ALA SEQRES 10 C 270 TYR ASP GLY CYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 C 270 LYS THR TRP THR ALA ALA ASP MET ALA ALA LEU ILE THR SEQRES 12 C 270 LYS HIS LYS TRP GLU GLN ALA GLY GLU ALA GLU ARG LEU SEQRES 13 C 270 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 C 270 ARG TYR LEU LYS ASN GLY ASN ALA THR LEU LEU ARG THR SEQRES 15 C 270 ASP SER PRO LYS ALA HIS VAL THR HIS HIS SER ARG PRO SEQRES 16 C 270 GLU ASP LYS VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 C 270 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LEU ASN GLY SEQRES 18 C 270 GLU GLU LEU ILE GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 C 270 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA SER VAL SEQRES 20 C 270 VAL VAL PRO LEU GLY LYS GLU GLN TYR TYR THR CYS HIS SEQRES 21 C 270 VAL TYR HIS GLN GLY LEU PRO GLU PRO LEU SEQRES 1 D 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 D 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 D 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 D 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 D 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 D 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 D 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 D 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 E 8 ARG GLY TYR VAL TYR GLN GLY LEU SEQRES 1 F 8 ARG GLY TYR VAL TYR GLN GLY LEU HELIX 1 H1A ARG A 50 GLU A 53 1 4 HELIX 2 H2A PRO A 57 TYR A 84 1 28 HELIX 3 H3A MET A 138 ALA A 150 1 13 HELIX 4 H4A GLU A 152 GLU A 161 1 10 HELIX 5 H5A THR A 163 ASN A 174 1 12 HELIX 6 H6A ASN A 176 LEU A 179 1 4 HELIX 7 H1C ARG C 50 GLU C 53 1 4 HELIX 8 H2C PRO C 57 TYR C 84 1 28 HELIX 9 H3C MET C 138 ALA C 150 1 13 HELIX 10 H4C GLU C 152 GLU C 161 1 10 HELIX 11 H5C THR C 163 ASN C 174 1 12 HELIX 12 H6C ASN C 176 LEU C 179 1 4 SHEET 1 SAA 7 THR A 31 ASP A 37 0 SHEET 2 SAA 7 ARG A 21 VAL A 28 -1 O GLU A 24 N PHE A 36 SHEET 3 SAA 7 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 4 SAA 7 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 5 SAA 7 LEU A 109 TYR A 118 -1 N ARG A 111 O GLU A 102 SHEET 6 SAA 7 CYS A 121 LEU A 126 -1 N LEU A 126 O GLN A 114 SHEET 7 SAA 7 TRP A 133 ALA A 135 -1 N THR A 134 O ALA A 125 SHEET 1 B1A 4 LYS A 186 SER A 193 0 SHEET 2 B1A 4 LYS A 198 PHE A 208 -1 N TRP A 204 O HIS A 188 SHEET 3 B1A 4 PHE A 241 PRO A 250 -1 O LYS A 243 N ALA A 205 SHEET 4 B1A 4 MET A 228 LEU A 230 -1 N GLU A 229 O SER A 246 SHEET 1 B2A 4 LYS A 186 SER A 193 0 SHEET 2 B2A 4 LYS A 198 PHE A 208 -1 N TRP A 204 O HIS A 188 SHEET 3 B2A 4 PHE A 241 PRO A 250 -1 O LYS A 243 N ALA A 205 SHEET 4 B2A 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 SCA 3 GLU A 222 LEU A 224 0 SHEET 2 SCA 3 THR A 214 LEU A 219 -1 O LEU A 219 N GLU A 222 SHEET 3 SCA 3 TYR A 257 TYR A 262 -1 N THR A 258 O GLN A 218 SHEET 1 D1B 4 GLN B 6 SER B 11 0 SHEET 2 D1B 4 ASN B 21 PHE B 30 -1 O THR B 28 N GLN B 6 SHEET 3 D1B 4 PHE B 62 PHE B 70 -1 N PHE B 62 O PHE B 30 SHEET 4 D1B 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 D2B 4 GLN B 6 SER B 11 0 SHEET 2 D2B 4 ASN B 21 PHE B 30 -1 O THR B 28 N GLN B 6 SHEET 3 D2B 4 PHE B 62 PHE B 70 -1 N PHE B 62 O PHE B 30 SHEET 4 D2B 4 SER B 55 PHE B 56 -1 O SER B 55 N TYR B 63 SHEET 1 SEB 4 LYS B 44 LYS B 45 0 SHEET 2 SEB 4 ILE B 35 LYS B 41 -1 O LYS B 41 N LYS B 44 SHEET 3 SEB 4 TYR B 78 HIS B 84 -1 O ALA B 79 N LEU B 40 SHEET 4 SEB 4 LYS B 91 TYR B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 SAC 7 THR C 31 ASP C 37 0 SHEET 2 SAC 7 ARG C 21 VAL C 28 -1 O GLU C 24 N PHE C 36 SHEET 3 SAC 7 HIS C 3 VAL C 12 -1 N PHE C 8 O VAL C 25 SHEET 4 SAC 7 THR C 94 VAL C 103 -1 O VAL C 103 N HIS C 3 SHEET 5 SAC 7 LEU C 109 TYR C 118 -1 N ARG C 111 O GLU C 102 SHEET 6 SAC 7 CYS C 121 LEU C 126 -1 N LEU C 126 O GLN C 114 SHEET 7 SAC 7 TRP C 133 ALA C 135 -1 N THR C 134 O ALA C 125 SHEET 1 B1C 4 LYS C 186 SER C 193 0 SHEET 2 B1C 4 LYS C 198 PHE C 208 -1 N TRP C 204 O HIS C 188 SHEET 3 B1C 4 PHE C 241 PRO C 250 -1 O LYS C 243 N ALA C 205 SHEET 4 B1C 4 MET C 228 LEU C 230 -1 N GLU C 229 O SER C 246 SHEET 1 B2C 4 LYS C 186 SER C 193 0 SHEET 2 B2C 4 LYS C 198 PHE C 208 -1 N TRP C 204 O HIS C 188 SHEET 3 B2C 4 PHE C 241 PRO C 250 -1 O LYS C 243 N ALA C 205 SHEET 4 B2C 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 SCC 3 GLU C 222 LEU C 224 0 SHEET 2 SCC 3 THR C 214 LEU C 219 -1 O LEU C 219 N GLU C 222 SHEET 3 SCC 3 TYR C 257 TYR C 262 -1 N THR C 258 O GLN C 218 SHEET 1 D1D 4 GLN D 6 SER D 11 0 SHEET 2 D1D 4 ASN D 21 PHE D 30 -1 O THR D 28 N GLN D 6 SHEET 3 D1D 4 PHE D 62 PHE D 70 -1 N PHE D 62 O PHE D 30 SHEET 4 D1D 4 GLU D 50 MET D 51 -1 N GLU D 50 O HIS D 67 SHEET 1 D2D 4 GLN D 6 SER D 11 0 SHEET 2 D2D 4 ASN D 21 PHE D 30 -1 O THR D 28 N GLN D 6 SHEET 3 D2D 4 PHE D 62 PHE D 70 -1 N PHE D 62 O PHE D 30 SHEET 4 D2D 4 SER D 55 PHE D 56 -1 O SER D 55 N TYR D 63 SHEET 1 SED 4 LYS D 44 LYS D 45 0 SHEET 2 SED 4 ILE D 35 LYS D 41 -1 O LYS D 41 N LYS D 44 SHEET 3 SED 4 TYR D 78 HIS D 84 -1 O ALA D 79 N LEU D 40 SHEET 4 SED 4 LYS D 91 TYR D 94 -1 O LYS D 91 N VAL D 82 SSBOND 1 CYS A 203 CYS A 259 1555 1555 2.95 CISPEP 1 TYR A 209 PRO A 210 0 -6.99 CISPEP 2 HIS B 31 PRO B 32 0 24.06 CRYST1 90.900 92.200 67.500 90.00 111.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011001 0.000000 0.004276 0.00000 SCALE2 0.000000 0.010846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015895 0.00000