HEADER RECOMBINATION 20-NOV-13 2MHC TITLE NMR STRUCTURE OF THE CATALYTIC DOMAIN OF THE LARGE SERINE RESOLVASE TITLE 2 TNPX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNPX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-120; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: TN4451, TNPX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX4T2 KEYWDS SERINE RESOLVASE, RECOMBINATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.J.HEADEY,A.SIVAKUMARAN,V.ADAMS,A.J.W.RODGERS,J.I.ROOD,M.J.SCANLON, AUTHOR 2 M.C.J.WILCE REVDAT 2 14-JUN-23 2MHC 1 REMARK SEQADV REVDAT 1 26-NOV-14 2MHC 0 JRNL AUTH S.J.HEADEY,A.SIVAKUMARAN,V.ADAMS,A.J.W.RODGERS,J.I.SCANLON, JRNL AUTH 2 M.C.J.WILCE JRNL TITL SOLUTION STRUCTURE AND DNA BINDING OF THE CATALYTIC OF THE JRNL TITL 2 LARGE SERINE RESOLVASE TNPX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNSSOLVE 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FROM EXTENDED CONFORMER, FROM FOLDED REMARK 3 CONFORMER, IN TIP3 WATER REMARK 4 REMARK 4 2MHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000103616. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.4MM [U-99% 13C; U-99% 15N] REMARK 210 TNPX-1, 10% D2O-2, 150MM SODIUM REMARK 210 CHLORIDE-3, 20MM SODIUM REMARK 210 PHOSPHATE-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CA)CO REMARK 210 3D CBCA(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 2D (HB)CB(CGCD)HD; REMARK 210 3D (H)CCH-TOCSY 2D (HB)CB(CGCDCE) REMARK 210 HE; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-1 NOESY; 2D 1H-15N REMARK 210 NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.4, TOPSPIN, VNMRJ REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENER REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 97 H PHE A 102 1.59 REMARK 500 O ALA A 9 H ILE A 80 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -61.27 -122.23 REMARK 500 1 ARG A 6 -151.39 -81.50 REMARK 500 1 LEU A 20 -70.76 -56.17 REMARK 500 1 THR A 21 94.97 62.20 REMARK 500 1 GLU A 23 -62.35 -90.51 REMARK 500 1 SER A 24 4.02 -67.32 REMARK 500 1 ASN A 25 44.85 -90.05 REMARK 500 1 SER A 26 -98.10 -156.59 REMARK 500 1 ILE A 27 -69.45 -172.41 REMARK 500 1 ASN A 45 29.78 48.68 REMARK 500 1 ILE A 46 100.66 -52.86 REMARK 500 1 ASP A 52 108.87 -163.83 REMARK 500 1 ASN A 58 -100.93 -179.59 REMARK 500 1 PHE A 59 -162.59 -116.76 REMARK 500 1 ASN A 60 76.13 68.94 REMARK 500 1 PRO A 62 -73.62 -56.15 REMARK 500 1 ASN A 75 -52.39 -123.50 REMARK 500 1 VAL A 76 89.81 -57.53 REMARK 500 1 ASN A 90 79.88 -63.45 REMARK 500 1 ASN A 106 87.73 59.36 REMARK 500 1 ASN A 113 35.89 -94.96 REMARK 500 1 ASN A 114 146.14 175.14 REMARK 500 1 ASP A 117 30.14 -169.47 REMARK 500 2 SER A 2 -80.02 -160.20 REMARK 500 2 THR A 4 137.40 69.31 REMARK 500 2 SER A 5 142.97 67.01 REMARK 500 2 ARG A 6 -141.41 -108.56 REMARK 500 2 SER A 26 23.26 -164.06 REMARK 500 2 ILE A 27 -82.66 61.23 REMARK 500 2 ILE A 46 99.17 -57.54 REMARK 500 2 ASN A 58 -112.25 169.76 REMARK 500 2 ASN A 60 78.11 83.31 REMARK 500 2 PRO A 62 -72.01 -55.61 REMARK 500 2 ASN A 90 90.39 -59.29 REMARK 500 2 ASN A 106 103.58 64.73 REMARK 500 2 ASP A 117 -41.07 -175.68 REMARK 500 2 ASN A 119 -159.09 -165.92 REMARK 500 3 SER A 2 110.71 70.82 REMARK 500 3 ARG A 3 -63.70 -171.13 REMARK 500 3 THR A 4 -60.35 -127.06 REMARK 500 3 SER A 5 95.33 65.39 REMARK 500 3 ARG A 6 -152.37 -71.23 REMARK 500 3 ASP A 18 50.95 30.22 REMARK 500 3 LEU A 20 -44.98 -134.72 REMARK 500 3 THR A 21 145.19 66.45 REMARK 500 3 SER A 26 126.03 -173.21 REMARK 500 3 ILE A 46 96.71 -50.98 REMARK 500 3 ASP A 52 109.28 -160.73 REMARK 500 3 ASN A 58 125.64 153.36 REMARK 500 3 PHE A 59 -159.15 39.76 REMARK 500 REMARK 500 THIS ENTRY HAS 184 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19625 RELATED DB: BMRB DBREF 2MHC A 2 120 UNP O05415 O05415_CLOPF 2 120 SEQADV 2MHC GLY A 1 UNP O05415 EXPRESSION TAG SEQRES 1 A 120 GLY SER ARG THR SER ARG ILE THR ALA LEU TYR GLU ARG SEQRES 2 A 120 LEU SER ARG ASP ASP ASP LEU THR GLY GLU SER ASN SER SEQRES 3 A 120 ILE THR ASN GLN LYS LYS TYR LEU GLU ASP TYR ALA ARG SEQRES 4 A 120 ARG ASN GLY PHE GLU ASN ILE ARG HIS PHE THR ASP ASP SEQRES 5 A 120 GLY PHE SER GLY VAL ASN PHE ASN ARG PRO GLY PHE GLN SEQRES 6 A 120 SER LEU ILE LYS GLU VAL GLU ALA GLY ASN VAL GLU THR SEQRES 7 A 120 LEU ILE VAL LYS ASP MET SER ARG LEU GLY ARG ASN TYR SEQRES 8 A 120 LEU GLN VAL GLY PHE TYR THR GLU VAL LEU PHE PRO GLN SEQRES 9 A 120 LYS ASN VAL ARG PHE LEU ALA ILE ASN ASN SER ILE ASP SEQRES 10 A 120 SER ASN ASN HELIX 1 1 ILE A 27 GLY A 42 1 16 HELIX 2 2 ARG A 61 GLY A 74 1 14 HELIX 3 3 ASN A 90 VAL A 100 1 11 HELIX 4 4 LEU A 101 ASN A 106 5 6 SHEET 1 A 4 ILE A 46 PHE A 49 0 SHEET 2 A 4 ILE A 7 TYR A 11 1 N LEU A 10 O PHE A 49 SHEET 3 A 4 VAL A 76 VAL A 81 1 O ILE A 80 N ALA A 9 SHEET 4 A 4 PHE A 109 ALA A 111 1 O LEU A 110 N LEU A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1