HEADER PROTEIN BINDING 26-NOV-13 2MHK TITLE E. COLI LPOA N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN ACTIVATOR LPOA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 28-256); COMPND 5 SYNONYM: PBP ACTIVATOR LPOA, LIPOPROTEIN ACTIVATOR OF PBP FROM THE COMPND 6 OUTER MEMBRANE A; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B3147, JW3116, LPOA, YRAM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS LPOA, TPR-LIKE FOLD, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.L.JEAN,C.BOUGAULT,A.LODGE,A.DEROUAUX,G.CALLENS,A.EGAN,R.J.LEWIS, AUTHOR 2 W.VOLLMER,J.SIMORRE REVDAT 5 15-MAY-24 2MHK 1 REMARK REVDAT 4 14-JUN-23 2MHK 1 REMARK SEQADV REVDAT 3 23-JUL-14 2MHK 1 JRNL REVDAT 2 16-JUL-14 2MHK 1 JRNL REVDAT 1 25-JUN-14 2MHK 0 JRNL AUTH N.L.JEAN,C.M.BOUGAULT,A.LODGE,A.DEROUAUX,G.CALLENS,A.J.EGAN, JRNL AUTH 2 I.AYALA,R.J.LEWIS,W.VOLLMER,J.P.SIMORRE JRNL TITL ELONGATED STRUCTURE OF THE OUTER-MEMBRANE ACTIVATOR OF JRNL TITL 2 PEPTIDOGLYCAN SYNTHESIS LPOA: IMPLICATIONS FOR PBP1A JRNL TITL 3 STIMULATION. JRNL REF STRUCTURE V. 22 1047 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24954617 JRNL DOI 10.1016/J.STR.2014.04.017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.L.JEAN,C.BOUGAULT,A.LODGE,A.DEROUAUX,G.CALLENS,A.EGAN, REMARK 1 AUTH 2 R.J.LEWIS,W.VOLLMER,J.SIMORRE REMARK 1 TITL BACKBONE AND SIDE-CHAIN 1H, 13C, 15N NMR ASSIGNMENT OF THE REMARK 1 TITL 2 N-TERMINAL DOMAIN OF ESCHERICHIA COLI LPOA REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 2.2, CNS 1.2 REMARK 3 AUTHORS : CCPN (CCPNMR ANALYSIS), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000103624. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 323 REMARK 210 PH : 4.500 REMARK 210 IONIC STRENGTH : 0.100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.0 MM [U-100% 13C; U-100% 15N] REMARK 210 LPOA_N-TER, 100.0 MM CH3COOH/ REMARK 210 CH3COONA BUFFER, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D HN(COCA)CB; 3D HN(CA) REMARK 210 CO; 3D C(CO)NH; 3D H(CCO)NH; 2D REMARK 210 1H-13C HSQC ALIPHATIC; 3D HCCH- REMARK 210 TOCSY; 2D 1H-13C HSQC AROMATIC; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D METHYL 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS; US2 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRPIPE, TALOS+, REMARK 210 UNIO'10 2.0.2, CNS 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 700 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 174 H MET A 178 1.54 REMARK 500 O GLN A 202 H PHE A 206 1.54 REMARK 500 O ASN A 167 HG1 THR A 171 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 PHE A 80 CZ PHE A 80 CE2 0.148 REMARK 500 3 TYR A 44 CE1 TYR A 44 CZ 0.086 REMARK 500 3 TYR A 44 CZ TYR A 44 CE2 -0.094 REMARK 500 6 PHE A 80 CZ PHE A 80 CE2 0.156 REMARK 500 7 TYR A 44 CE1 TYR A 44 CZ 0.078 REMARK 500 7 TYR A 44 CZ TYR A 44 CE2 -0.087 REMARK 500 7 PHE A 80 CZ PHE A 80 CE2 0.133 REMARK 500 9 PHE A 206 CE1 PHE A 206 CZ 0.126 REMARK 500 12 PHE A 245 CZ PHE A 245 CE2 0.121 REMARK 500 15 PHE A 80 CZ PHE A 80 CE2 0.154 REMARK 500 16 PHE A 245 CZ PHE A 245 CE2 0.138 REMARK 500 18 TYR A 44 CE1 TYR A 44 CZ 0.117 REMARK 500 18 TYR A 44 CZ TYR A 44 CE2 -0.115 REMARK 500 19 TYR A 44 CE1 TYR A 44 CZ 0.105 REMARK 500 19 TYR A 44 CZ TYR A 44 CE2 -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 10 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 4 -85.36 -79.23 REMARK 500 1 HIS A 5 46.00 -153.50 REMARK 500 1 MET A 21 131.15 65.22 REMARK 500 1 ASP A 53 -70.86 -25.82 REMARK 500 1 ASP A 108 39.37 -96.87 REMARK 500 1 LEU A 124 -152.73 -72.92 REMARK 500 1 SER A 140 55.87 -111.03 REMARK 500 1 GLN A 141 4.18 -45.02 REMARK 500 1 PRO A 144 82.99 -58.91 REMARK 500 1 ASP A 147 -18.59 -49.89 REMARK 500 1 LEU A 159 -146.27 -89.58 REMARK 500 1 ALA A 174 -62.18 -91.75 REMARK 500 1 ASN A 189 -153.67 -80.23 REMARK 500 1 ASN A 193 -63.46 -99.62 REMARK 500 1 LEU A 195 -74.11 -67.61 REMARK 500 1 LYS A 246 -162.29 -49.08 REMARK 500 1 SER A 249 -31.44 72.16 REMARK 500 2 HIS A 8 -86.00 -144.80 REMARK 500 2 HIS A 9 38.95 -164.42 REMARK 500 2 HIS A 10 -71.40 -131.26 REMARK 500 2 ARG A 17 89.54 -47.71 REMARK 500 2 HIS A 20 33.78 -75.51 REMARK 500 2 THR A 23 -67.04 -96.20 REMARK 500 2 ASP A 53 -71.04 -27.01 REMARK 500 2 ASP A 108 42.01 -97.83 REMARK 500 2 LEU A 124 -155.89 -66.37 REMARK 500 2 SER A 140 53.98 -109.73 REMARK 500 2 GLN A 141 6.71 -49.62 REMARK 500 2 PRO A 144 87.07 -53.91 REMARK 500 2 ASP A 147 -17.17 -47.10 REMARK 500 2 LEU A 159 -145.97 -91.17 REMARK 500 2 ASN A 189 -151.90 -69.24 REMARK 500 2 LEU A 195 -72.17 -67.45 REMARK 500 2 ASN A 241 3.24 -68.45 REMARK 500 2 PHE A 245 167.20 -49.14 REMARK 500 2 LYS A 246 -159.66 -47.06 REMARK 500 2 SER A 249 32.86 -88.65 REMARK 500 3 SER A 3 -163.80 62.35 REMARK 500 3 HIS A 10 -152.95 59.11 REMARK 500 3 MET A 21 126.30 64.15 REMARK 500 3 SER A 51 -167.83 -104.10 REMARK 500 3 ASP A 53 -70.65 -27.51 REMARK 500 3 ASP A 108 41.00 -98.87 REMARK 500 3 LEU A 124 -154.33 -66.66 REMARK 500 3 SER A 140 55.24 -112.95 REMARK 500 3 GLN A 141 5.03 -43.42 REMARK 500 3 PRO A 144 88.44 -54.65 REMARK 500 3 LEU A 159 -143.00 -87.63 REMARK 500 3 ALA A 174 -62.62 -92.03 REMARK 500 3 ALA A 183 -39.22 -38.58 REMARK 500 REMARK 500 THIS ENTRY HAS 364 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 12 PHE A 245 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18853 RELATED DB: BMRB REMARK 900 BACKBONE AND SIDE-CHAIN 1H, 13C, 15N NMR ASSIGNMENT OF THE N- REMARK 900 TERMINAL DOMAIN OF ESCHERICHIA COLI LPOA REMARK 900 RELATED ID: 3CKM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE YRAM (LPOA) C-TERMINAL DOMAIN DBREF 2MHK A 22 250 UNP P45464 LPOA_ECOLI 28 256 SEQADV 2MHK MET A 1 UNP P45464 EXPRESSION TAG SEQADV 2MHK GLY A 2 UNP P45464 EXPRESSION TAG SEQADV 2MHK SER A 3 UNP P45464 EXPRESSION TAG SEQADV 2MHK SER A 4 UNP P45464 EXPRESSION TAG SEQADV 2MHK HIS A 5 UNP P45464 EXPRESSION TAG SEQADV 2MHK HIS A 6 UNP P45464 EXPRESSION TAG SEQADV 2MHK HIS A 7 UNP P45464 EXPRESSION TAG SEQADV 2MHK HIS A 8 UNP P45464 EXPRESSION TAG SEQADV 2MHK HIS A 9 UNP P45464 EXPRESSION TAG SEQADV 2MHK HIS A 10 UNP P45464 EXPRESSION TAG SEQADV 2MHK SER A 11 UNP P45464 EXPRESSION TAG SEQADV 2MHK SER A 12 UNP P45464 EXPRESSION TAG SEQADV 2MHK GLY A 13 UNP P45464 EXPRESSION TAG SEQADV 2MHK LEU A 14 UNP P45464 EXPRESSION TAG SEQADV 2MHK VAL A 15 UNP P45464 EXPRESSION TAG SEQADV 2MHK PRO A 16 UNP P45464 EXPRESSION TAG SEQADV 2MHK ARG A 17 UNP P45464 EXPRESSION TAG SEQADV 2MHK GLY A 18 UNP P45464 EXPRESSION TAG SEQADV 2MHK SER A 19 UNP P45464 EXPRESSION TAG SEQADV 2MHK HIS A 20 UNP P45464 EXPRESSION TAG SEQADV 2MHK MET A 21 UNP P45464 EXPRESSION TAG SEQRES 1 A 250 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 250 LEU VAL PRO ARG GLY SER HIS MET GLY THR HIS THR PRO SEQRES 3 A 250 ASP GLN SER THR ALA TYR MET GLN GLY THR ALA GLN ALA SEQRES 4 A 250 ASP SER ALA PHE TYR LEU GLN GLN MET GLN GLN SER SER SEQRES 5 A 250 ASP ASP THR ARG ILE ASN TRP GLN LEU LEU ALA ILE ARG SEQRES 6 A 250 ALA LEU VAL LYS GLU GLY LYS THR GLY GLN ALA VAL GLU SEQRES 7 A 250 LEU PHE ASN GLN LEU PRO GLN GLU LEU ASN ASP ALA GLN SEQRES 8 A 250 ARG ARG GLU LYS THR LEU LEU ALA VAL GLU ILE LYS LEU SEQRES 9 A 250 ALA GLN LYS ASP PHE ALA GLY ALA GLN ASN LEU LEU ALA SEQRES 10 A 250 LYS ILE THR PRO ALA ASP LEU GLU GLN ASN GLN GLN ALA SEQRES 11 A 250 ARG TYR TRP GLN ALA LYS ILE ASP ALA SER GLN GLY ARG SEQRES 12 A 250 PRO SER ILE ASP LEU LEU ARG ALA LEU ILE ALA GLN GLU SEQRES 13 A 250 PRO LEU LEU GLY ALA LYS GLU LYS GLN GLN ASN ILE ASP SEQRES 14 A 250 ALA THR TRP GLN ALA LEU SER SER MET THR GLN GLU GLN SEQRES 15 A 250 ALA ASN THR LEU VAL ILE ASN ALA ASP GLU ASN ILE LEU SEQRES 16 A 250 GLN GLY TRP LEU ASP LEU GLN ARG VAL TRP PHE ASP ASN SEQRES 17 A 250 ARG ASN ASP PRO ASP MET MET LYS ALA GLY ILE ALA ASP SEQRES 18 A 250 TRP GLN LYS ARG TYR PRO ASN ASN PRO GLY ALA LYS MET SEQRES 19 A 250 LEU PRO THR GLN LEU VAL ASN VAL LYS ALA PHE LYS PRO SEQRES 20 A 250 ALA SER THR HELIX 1 1 THR A 30 GLY A 35 1 6 HELIX 2 2 ASP A 40 GLN A 49 1 10 HELIX 3 3 SER A 52 GLY A 71 1 20 HELIX 4 4 THR A 73 ASN A 81 1 9 HELIX 5 5 ASN A 88 LEU A 104 1 17 HELIX 6 6 ASP A 108 ALA A 117 1 10 HELIX 7 7 GLU A 125 GLN A 134 1 10 HELIX 8 8 ALA A 135 SER A 140 1 6 HELIX 9 9 SER A 145 GLU A 156 1 12 HELIX 10 10 GLY A 160 SER A 176 1 17 HELIX 11 11 THR A 179 ASN A 184 1 6 HELIX 12 12 ASN A 193 ARG A 209 1 17 HELIX 13 13 ASP A 211 TYR A 226 1 16 HELIX 14 14 ASN A 229 LYS A 233 5 5 HELIX 15 15 LEU A 239 LYS A 243 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1