HEADER ELECTRON TRANSPORT 26-NOV-13 2MHM TITLE SOLUTION STRUCTURE OF CYTOCHROME C Y67H COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: CYC1, J1653, YJR048W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PBTR2 KEYWDS Y67H, HYDROGEN-BOND, H2O2, GUAIACOL, PEROXIDATION, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.X.LAN,Z.H.WANG,Z.Z.YANG,T.L.YING,H.M.WU,X.S.TAN,C.Y.CAO,Z.X.HUANG REVDAT 2 20-NOV-24 2MHM 1 REMARK SEQADV LINK REVDAT 1 29-OCT-14 2MHM 0 JRNL AUTH W.X.LAN,Z.H.WANG,Z.Z.YANG,T.L.YING,X.ZHANG,X.S.TAN,M.LIU, JRNL AUTH 2 C.Y.CAO,Z.X.HUANG JRNL TITL STRUCTURAL BASIS FOR CYTOCHROME C Y67H MUTANT TO FUNCTION AS JRNL TITL 2 A PEROXIDASE JRNL REF PLOS ONE V. 9 07305 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25210769 JRNL DOI 10.1371/JOURNAL.PONE.0107305 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, X-PLOR REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. (CNS), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000103626. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM CYTC C Y67H-1, 90% H2O, 10% REMARK 210 D2O; 1 MM CYTC C Y67H-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, TOCSY ,DQCOSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : NMR REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 38 HE21 GLN A 42 1.22 REMARK 500 HD1 HIS A 18 O PRO A 30 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A -1 96.43 -62.88 REMARK 500 1 ARG A 13 59.38 -150.28 REMARK 500 1 CYS A 14 -51.98 -171.18 REMARK 500 1 VAL A 20 -0.23 54.32 REMARK 500 1 VAL A 28 -84.77 53.73 REMARK 500 1 HIS A 33 95.24 -166.56 REMARK 500 1 GLU A 44 17.31 43.32 REMARK 500 1 ASN A 56 118.72 50.91 REMARK 500 1 ASN A 70 68.73 -152.87 REMARK 500 1 ALA A 72 -78.87 -70.91 REMARK 500 2 ALA A -1 -22.58 -39.95 REMARK 500 2 ALA A 3 -128.23 -80.77 REMARK 500 2 LYS A 4 -84.19 57.64 REMARK 500 2 ARG A 13 28.71 -147.02 REMARK 500 2 CYS A 14 -24.08 -171.08 REMARK 500 2 PRO A 25 -156.04 -74.26 REMARK 500 2 LYS A 27 -125.07 -103.78 REMARK 500 2 HIS A 33 90.80 -172.19 REMARK 500 2 ALA A 51 -70.32 -50.25 REMARK 500 3 ALA A -1 98.73 -42.02 REMARK 500 3 ALA A 3 -141.58 51.31 REMARK 500 3 LYS A 4 -80.50 55.61 REMARK 500 3 ARG A 13 59.30 -150.62 REMARK 500 3 CYS A 14 -50.29 -171.17 REMARK 500 3 VAL A 20 -0.75 64.02 REMARK 500 3 PRO A 25 -159.95 -73.78 REMARK 500 3 LYS A 27 -125.94 -101.37 REMARK 500 3 HIS A 33 98.26 -171.71 REMARK 500 3 GLU A 44 94.25 38.05 REMARK 500 3 ASN A 70 69.04 -167.56 REMARK 500 4 ALA A -1 95.64 -63.06 REMARK 500 4 ARG A 13 55.96 -148.32 REMARK 500 4 CYS A 14 -52.91 -173.90 REMARK 500 4 VAL A 20 21.48 39.70 REMARK 500 4 PRO A 25 -153.77 -77.16 REMARK 500 4 LYS A 27 -130.09 -106.48 REMARK 500 4 HIS A 33 97.25 -174.84 REMARK 500 4 GLU A 44 -16.73 57.12 REMARK 500 4 ALA A 51 -75.96 -52.33 REMARK 500 4 ASN A 70 67.99 -152.92 REMARK 500 4 ALA A 72 -78.75 -71.03 REMARK 500 4 ALA A 101 66.62 154.01 REMARK 500 4 THR A 102 -2.23 61.32 REMARK 500 5 ALA A 3 -165.84 173.90 REMARK 500 5 ARG A 13 61.97 -153.80 REMARK 500 5 CYS A 14 -45.23 -171.48 REMARK 500 5 VAL A 28 -76.44 -146.31 REMARK 500 5 PRO A 30 1.69 -58.20 REMARK 500 5 ASN A 31 122.09 66.56 REMARK 500 5 HIS A 33 94.61 -167.32 REMARK 500 REMARK 500 THIS ENTRY HAS 217 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 90.8 REMARK 620 3 HEC A 201 NB 89.2 90.0 REMARK 620 4 HEC A 201 NC 89.2 179.8 90.2 REMARK 620 5 HEC A 201 ND 90.8 89.9 179.8 90.0 REMARK 620 6 MET A 80 SD 178.3 90.8 90.2 89.3 89.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19638 RELATED DB: BMRB DBREF 2MHM A -5 103 UNP P00044 CYC1_YEAST 2 109 SEQADV 2MHM HIS A 67 UNP P00044 TYR 73 ENGINEERED MUTATION SEQADV 2MHM ALA A 72 UNP P00044 LYS 78 CONFLICT SEQADV 2MHM THR A 102 UNP P00044 CYS 108 CONFLICT SEQRES 1 A 108 THR GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR SEQRES 2 A 108 LEU PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU SEQRES 3 A 108 LYS GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY SEQRES 4 A 108 ILE PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER SEQRES 5 A 108 TYR THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP SEQRES 6 A 108 GLU ASN ASN MET SER GLU HIS LEU THR ASN PRO ALA LYS SEQRES 7 A 108 TYR ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS SEQRES 8 A 108 LYS GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS SEQRES 9 A 108 LYS ALA THR GLU HET HEC A 201 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 HELIX 1 1 SER A 2 CYS A 14 1 13 HELIX 2 2 THR A 49 ASN A 56 1 8 HELIX 3 3 ASP A 60 ASN A 70 1 11 HELIX 4 4 ASN A 70 ILE A 75 1 6 HELIX 5 5 LYS A 87 GLU A 103 1 17 SHEET 1 A 2 ARG A 38 HIS A 39 0 SHEET 2 A 2 LEU A 58 TRP A 59 -1 O TRP A 59 N ARG A 38 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.81 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.81 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.10 LINK SD MET A 80 FE HEC A 201 1555 1555 2.43 SITE 1 AC1 17 PHE A 10 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 17 VAL A 28 GLY A 29 PRO A 30 ILE A 35 SITE 3 AC1 17 SER A 40 SER A 47 TYR A 48 THR A 49 SITE 4 AC1 17 TRP A 59 LEU A 68 LYS A 79 MET A 80 SITE 5 AC1 17 LEU A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 291 1710 CONECT 337 1718 CONECT 351 1688 CONECT 1295 1688 CONECT 1688 351 1295 1693 1704 CONECT 1688 1712 1720 CONECT 1689 1694 1724 1731 CONECT 1690 1697 1705 1732 CONECT 1691 1708 1713 1733 CONECT 1692 1716 1721 1734 CONECT 1693 1688 1694 1697 CONECT 1694 1689 1693 1695 CONECT 1695 1694 1696 1699 CONECT 1696 1695 1697 1698 CONECT 1697 1690 1693 1696 CONECT 1698 1696 1735 1736 1737 CONECT 1699 1695 1700 1738 1739 CONECT 1700 1699 1701 1740 1741 CONECT 1701 1700 1702 1703 CONECT 1702 1701 CONECT 1703 1701 CONECT 1704 1688 1705 1708 CONECT 1705 1690 1704 1706 CONECT 1706 1705 1707 1709 CONECT 1707 1706 1708 1710 CONECT 1708 1691 1704 1707 CONECT 1709 1706 1742 1743 1744 CONECT 1710 291 1707 1711 1745 CONECT 1711 1710 1746 1747 1748 CONECT 1712 1688 1713 1716 CONECT 1713 1691 1712 1714 CONECT 1714 1713 1715 1717 CONECT 1715 1714 1716 1718 CONECT 1716 1692 1712 1715 CONECT 1717 1714 1749 1750 1751 CONECT 1718 337 1715 1719 1752 CONECT 1719 1718 1753 1754 1755 CONECT 1720 1688 1721 1724 CONECT 1721 1692 1720 1722 CONECT 1722 1721 1723 1725 CONECT 1723 1722 1724 1726 CONECT 1724 1689 1720 1723 CONECT 1725 1722 1756 1757 1758 CONECT 1726 1723 1727 1759 1760 CONECT 1727 1726 1728 1761 1762 CONECT 1728 1727 1729 1730 CONECT 1729 1728 CONECT 1730 1728 CONECT 1731 1689 CONECT 1732 1690 CONECT 1733 1691 CONECT 1734 1692 CONECT 1735 1698 CONECT 1736 1698 CONECT 1737 1698 CONECT 1738 1699 CONECT 1739 1699 CONECT 1740 1700 CONECT 1741 1700 CONECT 1742 1709 CONECT 1743 1709 CONECT 1744 1709 CONECT 1745 1710 CONECT 1746 1711 CONECT 1747 1711 CONECT 1748 1711 CONECT 1749 1717 CONECT 1750 1717 CONECT 1751 1717 CONECT 1752 1718 CONECT 1753 1719 CONECT 1754 1719 CONECT 1755 1719 CONECT 1756 1725 CONECT 1757 1725 CONECT 1758 1725 CONECT 1759 1726 CONECT 1760 1726 CONECT 1761 1727 CONECT 1762 1727 MASTER 168 0 1 5 2 0 5 6 884 1 80 9 END