HEADER TRANSCRIPTION 02-DEC-13 2MHN TITLE NMR STRUCTURE OF THE FIRST RRM DOMAIN OF THE PROTEIN RBM39 FROM HOMO TITLE 2 SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 39; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM 1 DOMAIN RESIDUES 144-234; COMPND 5 SYNONYM: HEPATOCELLULAR CARCINOMA PROTEIN 1, RNA-BINDING MOTIF COMPND 6 PROTEIN 39, RNA-BINDING REGION-CONTAINING PROTEIN 2, SPLICING FACTOR COMPND 7 HCC1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM39, HCC1, RNPC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PSPEEDET KEYWDS T-CELL, PSI-BIOLOGY, RNA BINDING PROTEIN, TRANSCRIPTION, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PARTNERSHIP KEYWDS 3 FOR T-CELL BIOLOGY, TCELL EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.SERRANO,M.GERALT,S.K.DUTTA,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG),PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) REVDAT 2 14-JUN-23 2MHN 1 REMARK SEQADV REVDAT 1 01-JAN-14 2MHN 0 JRNL AUTH P.SERRANO,K.WUTHRICH,M.GERALT,S.K.DUTTA JRNL TITL NMR STRUCTURE OF THE FIRST RRM DOMAIN OF THE PROTEIN RBM39 JRNL TITL 2 FROM HOMO SAPIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, OPALP REMARK 3 AUTHORS : GUNTERT P. (CYANA), LUGINBUHL, GUNTERT, BILLETER REMARK 3 AND WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000103627. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0.220 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 100 MM SODIUM CHLORIDE, REMARK 210 10 MM [U-99% 2H] SODIUM ACETATE, REMARK 210 5 MM SODIUM AZIDE, 2 MM DTT, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 4D REMARK 210 APSY HACANH; 5D APSY CBCACONH; REMARK 210 5D APSY HACACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 -62.80 -123.97 REMARK 500 1 ARG A 43 51.88 -115.05 REMARK 500 1 ARG A 51 -5.45 -149.52 REMARK 500 1 ARG A 77 82.04 -162.59 REMARK 500 1 VAL A 85 4.99 -60.04 REMARK 500 1 ALA A 87 173.63 58.77 REMARK 500 1 SER A 88 50.53 -115.11 REMARK 500 1 GLU A 91 49.20 -81.57 REMARK 500 2 MET A 3 158.79 61.52 REMARK 500 2 GLN A 19 15.31 -153.86 REMARK 500 2 VAL A 36 15.16 -142.75 REMARK 500 2 SER A 50 -70.87 -157.43 REMARK 500 2 LYS A 54 11.01 56.49 REMARK 500 2 SER A 88 74.98 43.65 REMARK 500 2 GLN A 89 155.94 -45.58 REMARK 500 2 ASN A 93 101.58 64.67 REMARK 500 3 HIS A 2 -27.44 -146.42 REMARK 500 3 MET A 3 -62.05 -148.70 REMARK 500 3 ARG A 51 52.33 -159.68 REMARK 500 3 SER A 53 39.90 -75.98 REMARK 500 3 VAL A 78 93.99 -61.46 REMARK 500 3 PRO A 82 -179.44 -67.70 REMARK 500 3 VAL A 85 3.75 -66.52 REMARK 500 3 ALA A 87 163.27 58.58 REMARK 500 3 ALA A 90 157.77 69.56 REMARK 500 3 GLU A 91 32.86 -78.33 REMARK 500 4 HIS A 2 91.69 43.65 REMARK 500 4 MET A 3 -5.81 54.45 REMARK 500 4 ASN A 4 154.71 75.91 REMARK 500 4 ARG A 13 0.37 57.94 REMARK 500 4 MET A 18 41.37 -91.21 REMARK 500 4 GLN A 19 27.25 -154.39 REMARK 500 4 LYS A 38 53.91 -91.74 REMARK 500 4 ARG A 48 -45.68 -170.84 REMARK 500 4 ASN A 49 -71.08 59.91 REMARK 500 4 SER A 88 -154.39 53.55 REMARK 500 5 HIS A 2 -71.84 63.11 REMARK 500 5 ASN A 4 -166.31 -166.20 REMARK 500 5 ARG A 13 1.42 -61.28 REMARK 500 5 PRO A 26 0.90 -69.37 REMARK 500 5 ASP A 47 24.85 -67.58 REMARK 500 5 ARG A 48 -73.07 64.66 REMARK 500 5 ASN A 49 18.73 47.27 REMARK 500 5 SER A 50 28.26 44.55 REMARK 500 5 ARG A 51 -39.18 -143.03 REMARK 500 5 ARG A 52 -173.51 64.43 REMARK 500 5 VAL A 85 10.38 -62.15 REMARK 500 5 ALA A 87 164.03 58.83 REMARK 500 5 ALA A 90 -178.56 48.80 REMARK 500 5 LYS A 92 -153.42 -95.15 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 36 GLY A 37 4 149.39 REMARK 500 SER A 53 LYS A 54 18 -148.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 40 0.09 SIDE CHAIN REMARK 500 3 ARG A 10 0.10 SIDE CHAIN REMARK 500 3 TYR A 58 0.08 SIDE CHAIN REMARK 500 5 ARG A 23 0.09 SIDE CHAIN REMARK 500 5 ARG A 48 0.10 SIDE CHAIN REMARK 500 5 ARG A 51 0.08 SIDE CHAIN REMARK 500 5 ARG A 52 0.08 SIDE CHAIN REMARK 500 5 ARG A 94 0.08 SIDE CHAIN REMARK 500 6 ARG A 94 0.09 SIDE CHAIN REMARK 500 7 ARG A 43 0.10 SIDE CHAIN REMARK 500 7 ARG A 52 0.09 SIDE CHAIN REMARK 500 9 ARG A 43 0.10 SIDE CHAIN REMARK 500 11 ARG A 13 0.12 SIDE CHAIN REMARK 500 11 ARG A 43 0.16 SIDE CHAIN REMARK 500 11 TYR A 58 0.08 SIDE CHAIN REMARK 500 12 ARG A 43 0.16 SIDE CHAIN REMARK 500 13 ARG A 52 0.09 SIDE CHAIN REMARK 500 14 ARG A 10 0.14 SIDE CHAIN REMARK 500 14 ARG A 40 0.10 SIDE CHAIN REMARK 500 16 ARG A 13 0.17 SIDE CHAIN REMARK 500 17 ARG A 40 0.09 SIDE CHAIN REMARK 500 18 ARG A 77 0.10 SIDE CHAIN REMARK 500 20 ARG A 52 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19642 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-424737 RELATED DB: TARGETTRACK DBREF 2MHN A 4 94 UNP Q14498 RBM39_HUMAN 144 234 SEQADV 2MHN GLY A 1 UNP Q14498 EXPRESSION TAG SEQADV 2MHN HIS A 2 UNP Q14498 EXPRESSION TAG SEQADV 2MHN MET A 3 UNP Q14498 EXPRESSION TAG SEQRES 1 A 94 GLY HIS MET ASN LEU THR PRO GLU GLU ARG ASP ALA ARG SEQRES 2 A 94 THR VAL PHE CYS MET GLN LEU ALA ALA ARG ILE ARG PRO SEQRES 3 A 94 ARG ASP LEU GLU GLU PHE PHE SER THR VAL GLY LYS VAL SEQRES 4 A 94 ARG ASP VAL ARG MET ILE SER ASP ARG ASN SER ARG ARG SEQRES 5 A 94 SER LYS GLY ILE ALA TYR VAL GLU PHE VAL ASP VAL SER SEQRES 6 A 94 SER VAL PRO LEU ALA ILE GLY LEU THR GLY GLN ARG VAL SEQRES 7 A 94 LEU GLY VAL PRO ILE ILE VAL GLN ALA SER GLN ALA GLU SEQRES 8 A 94 LYS ASN ARG HELIX 1 1 THR A 6 ALA A 12 1 7 HELIX 2 2 PRO A 26 THR A 35 1 10 HELIX 3 3 SER A 65 GLY A 72 1 8 HELIX 4 4 ARG A 77 VAL A 81 5 5 SHEET 1 A 3 THR A 14 MET A 18 0 SHEET 2 A 3 ILE A 56 PHE A 61 -1 O ALA A 57 N CYS A 17 SHEET 3 A 3 VAL A 39 VAL A 42 -1 N ARG A 40 O GLU A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1