HEADER ANTIMICROBIAL PROTEIN 13-DEC-13 2MIJ TITLE NMR STRUCTURE OF THE S-LINKED GLYCOPEPTIDE SUBLANCIN 168 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPBC2 PROPHAGE-DERIVED BACTERIOCIN SUBLANCIN-168; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168 KEYWDS GLYCOPEPTIDE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR C.V.GARCIA DE GONZALO,L.ZHU,T.J.OMAN,W.A.VAN DER DONK REVDAT 5 20-NOV-24 2MIJ 1 REMARK REVDAT 4 14-JUN-23 2MIJ 1 HETSYN REVDAT 3 29-JUL-20 2MIJ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 02-APR-14 2MIJ 1 JRNL REVDAT 1 12-MAR-14 2MIJ 0 JRNL AUTH C.V.GARCIA DE GONZALO,L.ZHU,T.J.OMAN,W.A.VAN DER DONK JRNL TITL NMR STRUCTURE OF THE S-LINKED GLYCOPEPTIDE SUBLANCIN 168. JRNL REF ACS CHEM.BIOL. V. 9 796 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24405370 JRNL DOI 10.1021/CB4008106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.34 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000103655. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-98% 13C; U-98% 15N] REMARK 210 13C,15N-LABELED SUBLANCIN, 90% REMARK 210 H2O/10% D2O; 2 MM SUBLANCIN, 90% REMARK 210 H2O/10% D2O; 2 MM [U-100% 15N] REMARK 210 15N-LABELED SUBLANCIN, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY; 3D CBCA(CO)NH; 3D REMARK 210 HNCA; 3D HNHA; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS A 22 H1 BGC A 101 1.52 REMARK 500 SG CYS A 22 O5 BGC A 101 1.97 REMARK 500 SG CYS A 22 C2 BGC A 101 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 3.83 56.68 REMARK 500 1 ALA A 5 -19.67 66.32 REMARK 500 1 CYS A 22 100.95 47.63 REMARK 500 2 LEU A 2 0.91 58.31 REMARK 500 2 ALA A 5 -20.32 68.26 REMARK 500 2 CYS A 14 -6.65 -56.58 REMARK 500 2 CYS A 22 107.19 52.73 REMARK 500 3 LEU A 2 0.83 57.95 REMARK 500 3 ALA A 5 -20.92 68.87 REMARK 500 3 CYS A 22 90.10 46.42 REMARK 500 4 LEU A 2 102.96 49.37 REMARK 500 4 ALA A 5 -20.61 67.08 REMARK 500 4 CYS A 14 0.25 -63.48 REMARK 500 4 CYS A 22 110.78 54.32 REMARK 500 5 LEU A 2 1.32 58.06 REMARK 500 5 ALA A 5 -19.70 66.82 REMARK 500 5 CYS A 14 -9.57 -58.10 REMARK 500 5 THR A 19 -155.51 -151.34 REMARK 500 5 CYS A 22 93.01 38.14 REMARK 500 6 LEU A 2 0.38 57.73 REMARK 500 6 ALA A 5 -19.34 65.94 REMARK 500 6 CYS A 22 94.39 44.26 REMARK 500 7 LEU A 2 1.10 58.24 REMARK 500 7 ALA A 5 -20.02 68.34 REMARK 500 7 CYS A 22 90.19 44.47 REMARK 500 8 LEU A 2 4.10 59.42 REMARK 500 8 ALA A 5 -16.81 67.25 REMARK 500 8 THR A 19 -113.27 -86.20 REMARK 500 8 CYS A 22 169.33 49.07 REMARK 500 9 ALA A 5 -20.77 65.85 REMARK 500 9 CYS A 14 -3.82 -58.00 REMARK 500 9 CYS A 22 113.22 53.15 REMARK 500 10 LEU A 2 18.31 44.75 REMARK 500 10 ALA A 5 -18.51 67.31 REMARK 500 10 CYS A 22 106.89 51.59 REMARK 500 11 LEU A 2 0.38 57.88 REMARK 500 11 ALA A 5 -22.11 67.65 REMARK 500 11 ILE A 20 -22.97 62.85 REMARK 500 11 CYS A 22 101.00 45.89 REMARK 500 12 LEU A 2 -0.09 58.33 REMARK 500 12 ALA A 5 -20.46 67.87 REMARK 500 12 CYS A 22 120.36 56.26 REMARK 500 13 LEU A 2 158.54 55.59 REMARK 500 13 ALA A 5 -20.72 67.50 REMARK 500 13 CYS A 22 157.66 57.35 REMARK 500 14 LEU A 2 0.32 58.25 REMARK 500 14 ALA A 5 -19.72 66.88 REMARK 500 14 CYS A 14 -5.03 -57.86 REMARK 500 14 CYS A 22 92.91 42.43 REMARK 500 15 LEU A 2 103.16 49.47 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19683 RELATED DB: BMRB DBREF 2MIJ A 1 37 UNP P68577 SUNA_BACSU 20 56 SEQRES 1 A 37 GLY LEU GLY LYS ALA GLN CYS ALA ALA LEU TRP LEU GLN SEQRES 2 A 37 CYS ALA SER GLY GLY THR ILE GLY CYS GLY GLY GLY ALA SEQRES 3 A 37 VAL ALA CYS GLN ASN TYR ARG GLN PHE CYS ARG HET BGC A 101 22 HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 BGC C6 H12 O6 HELIX 1 1 ALA A 5 CYS A 14 1 10 HELIX 2 2 VAL A 27 CYS A 36 1 10 SSBOND 1 CYS A 7 CYS A 36 1555 1555 2.26 SSBOND 2 CYS A 14 CYS A 29 1555 1555 2.25 LINK SG CYS A 22 C1 BGC A 101 1555 1555 0.96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1