HEADER IMMUNE SYSTEM 15-DEC-13 2MIM TITLE NMR STRUCTURE OF THE CHICKEN CD3 EPSILON DELTA/GAMMA HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD3 EPSILON PROTEIN,CD3 GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CHICKEN CD3 EPSILON DOMAIN (UNP RESIDUES 24-91),CHICKEN CD3 COMPND 5 GAMMA-DELTA DOMAIN (UNP RESIDUES 18-97); COMPND 6 SYNONYM: CD3E PROTEIN,CD3D ANTIGEN DELTA,CD3G/D PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CHIMERA OF CD3 EPSILON PROTEIN, LINKER, CD3 COMPND 9 GLYCOPROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: CD3 EPSILON, CD3E, CD3G, CD3D, D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS IMMUNE SIGNALLING SUBUNIT, CD3, TCR, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.HEADEY,R.BERRY,J.ROSSJOHN REVDAT 4 23-JAN-19 2MIM 1 COMPND SOURCE DBREF SEQADV REVDAT 3 22-OCT-14 2MIM 1 JRNL REVDAT 2 26-FEB-14 2MIM 1 TITLE REVDAT 1 12-FEB-14 2MIM 0 JRNL AUTH R.BERRY,S.J.HEADEY,M.J.CALL,J.MCCLUSKEY,C.A.TREGASKES, JRNL AUTH 2 J.KAUFMAN,R.KOH,M.J.SCANLON,M.E.CALL,J.ROSSJOHN JRNL TITL STRUCTURE OF THE CHICKEN CD3 EPSILON DELTA / GAMMA JRNL TITL 2 HETERODIMER AND ITS ASSEMBLY WITH THE ALPHA BETA T CELL JRNL TITL 3 RECEPTOR JRNL REF J.BIOL.CHEM. V. 289 8240 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24488493 JRNL DOI 10.1074/JBC.M113.544965 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000103658. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.6 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN-1, 90% H2O/10% D2O; 0.5 REMARK 210 MM [U-100% 13C; U-100% 15N; U-80% REMARK 210 2H] PROTEIN-2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HN(COCA)CB; REMARK 210 3D HNCACB; 3D H(CCO)NH; 3D HNCO; REMARK 210 3D HN(CO)CA; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, XEASY, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 114 H LYS A 117 1.60 REMARK 500 O LEU A 53 H LEU A 68 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 4 157.76 61.21 REMARK 500 1 GLN A 6 -46.74 -177.31 REMARK 500 1 ALA A 10 93.75 43.78 REMARK 500 1 SER A 25 -83.77 179.79 REMARK 500 1 ASP A 27 -43.96 -136.55 REMARK 500 1 ASP A 28 66.17 -159.96 REMARK 500 1 LYS A 32 -66.79 -135.44 REMARK 500 1 PRO A 33 -39.76 -31.09 REMARK 500 1 ASP A 34 92.11 -169.52 REMARK 500 1 SER A 50 93.01 -54.69 REMARK 500 1 LEU A 53 148.10 178.29 REMARK 500 1 ALA A 75 -75.61 -151.51 REMARK 500 1 ALA A 78 -64.83 -109.77 REMARK 500 1 LYS A 79 73.56 -152.02 REMARK 500 1 ASP A 81 -47.69 -147.26 REMARK 500 1 ASP A 86 110.73 60.58 REMARK 500 1 ALA A 88 84.03 -68.73 REMARK 500 1 LYS A 89 93.01 60.62 REMARK 500 1 ASP A 91 115.01 61.69 REMARK 500 1 ASP A 92 -44.74 -162.59 REMARK 500 1 ALA A 93 -79.98 63.11 REMARK 500 1 LYS A 94 144.22 -172.12 REMARK 500 1 ASP A 96 -67.10 -131.17 REMARK 500 1 VAL A 99 53.40 -146.47 REMARK 500 1 ALA A 100 -167.43 61.21 REMARK 500 1 LYS A 101 33.15 71.35 REMARK 500 1 VAL A 104 -39.04 -178.30 REMARK 500 1 SER A 115 85.53 -31.10 REMARK 500 1 LYS A 126 -169.83 -103.57 REMARK 500 1 LEU A 128 -65.45 -170.98 REMARK 500 1 THR A 130 90.47 -59.78 REMARK 500 1 TYR A 132 104.18 59.48 REMARK 500 1 GLU A 140 -130.61 -67.11 REMARK 500 1 ASP A 154 63.37 -101.55 REMARK 500 1 ASP A 155 152.80 -33.49 REMARK 500 1 ARG A 164 35.76 -80.76 REMARK 500 1 VAL A 168 146.13 -20.72 REMARK 500 1 HIS A 175 96.67 -178.80 REMARK 500 2 SER A 2 -46.08 -130.62 REMARK 500 2 ALA A 10 112.25 58.80 REMARK 500 2 THR A 16 18.77 54.70 REMARK 500 2 SER A 25 -81.00 179.87 REMARK 500 2 ASP A 27 -58.73 179.69 REMARK 500 2 ASP A 28 59.60 -145.72 REMARK 500 2 LYS A 32 -65.26 -143.39 REMARK 500 2 ASP A 34 90.40 -161.40 REMARK 500 2 ASN A 40 -80.06 -33.65 REMARK 500 2 SER A 50 94.52 -55.27 REMARK 500 2 LEU A 53 147.80 -179.56 REMARK 500 2 SER A 74 74.61 -113.44 REMARK 500 REMARK 500 THIS ENTRY HAS 340 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19687 RELATED DB: BMRB DBREF 2MIM A 5 72 UNP P70069 P70069_CHICK 24 91 DBREF 2MIM A 99 178 UNP Q90768 Q90768_CHICK 18 97 SEQADV 2MIM GLY A 1 UNP P70069 EXPRESSION TAG SEQADV 2MIM SER A 2 UNP P70069 EXPRESSION TAG SEQADV 2MIM HIS A 3 UNP P70069 EXPRESSION TAG SEQADV 2MIM MET A 4 UNP P70069 EXPRESSION TAG SEQADV 2MIM GLY A 73 UNP P70069 LINKER SEQADV 2MIM SER A 74 UNP P70069 LINKER SEQADV 2MIM ALA A 75 UNP P70069 LINKER SEQADV 2MIM ASP A 76 UNP P70069 LINKER SEQADV 2MIM ASP A 77 UNP P70069 LINKER SEQADV 2MIM ALA A 78 UNP P70069 LINKER SEQADV 2MIM LYS A 79 UNP P70069 LINKER SEQADV 2MIM LYS A 80 UNP P70069 LINKER SEQADV 2MIM ASP A 81 UNP P70069 LINKER SEQADV 2MIM ALA A 82 UNP P70069 LINKER SEQADV 2MIM ALA A 83 UNP P70069 LINKER SEQADV 2MIM LYS A 84 UNP P70069 LINKER SEQADV 2MIM LYS A 85 UNP P70069 LINKER SEQADV 2MIM ASP A 86 UNP P70069 LINKER SEQADV 2MIM ASP A 87 UNP P70069 LINKER SEQADV 2MIM ALA A 88 UNP P70069 LINKER SEQADV 2MIM LYS A 89 UNP P70069 LINKER SEQADV 2MIM LYS A 90 UNP P70069 LINKER SEQADV 2MIM ASP A 91 UNP P70069 LINKER SEQADV 2MIM ASP A 92 UNP P70069 LINKER SEQADV 2MIM ALA A 93 UNP P70069 LINKER SEQADV 2MIM LYS A 94 UNP P70069 LINKER SEQADV 2MIM LYS A 95 UNP P70069 LINKER SEQADV 2MIM ASP A 96 UNP P70069 LINKER SEQADV 2MIM GLY A 97 UNP P70069 LINKER SEQADV 2MIM SER A 98 UNP P70069 LINKER SEQRES 1 A 178 GLY SER HIS MET GLY GLN GLU GLU PHE ALA VAL GLU ILE SEQRES 2 A 178 SER GLY THR THR VAL THR ILE THR CYS PRO SER SER GLY SEQRES 3 A 178 ASP ASP ILE LYS TRP LYS PRO ASP PRO ALA LEU GLY ASP SEQRES 4 A 178 ASN ASN LYS TYR ILE ILE GLN ASN HIS ASP SER SER PRO SEQRES 5 A 178 LEU THR VAL SER CYS THR ALA GLY ASP GLN GLU HIS THR SEQRES 6 A 178 MET TYR LEU ASN ALA LYS VAL GLY SER ALA ASP ASP ALA SEQRES 7 A 178 LYS LYS ASP ALA ALA LYS LYS ASP ASP ALA LYS LYS ASP SEQRES 8 A 178 ASP ALA LYS LYS ASP GLY SER VAL ALA LYS LEU GLY VAL SEQRES 9 A 178 HIS GLY LEU SER MET SER VAL LYS GLU VAL SER GLY LYS SEQRES 10 A 178 VAL PHE LEU GLN CYS GLN GLU SER LYS ASP LEU ASN THR SEQRES 11 A 178 ASN TYR LEU TRP LYS LYS GLY LYS GLU GLU LEU GLY ASN SEQRES 12 A 178 MET ARG GLN LEU ASP LEU GLY ALA ILE TYR ASP ASP PRO SEQRES 13 A 178 ARG GLY THR TYR THR CYS GLN ARG ASP GLU ASN VAL ASN SEQRES 14 A 178 SER THR LEU HIS VAL HIS TYR ARG MET HELIX 1 1 ASP A 34 GLY A 38 5 5 SHEET 1 A 3 VAL A 11 SER A 14 0 SHEET 2 A 3 THR A 17 THR A 21 -1 O THR A 19 N GLU A 12 SHEET 3 A 3 LYS A 42 GLN A 46 -1 O ILE A 45 N VAL A 18 SHEET 1 B 5 THR A 54 ALA A 59 0 SHEET 2 B 5 GLN A 62 TYR A 67 -1 O HIS A 64 N CYS A 57 SHEET 3 B 5 THR A 171 HIS A 173 1 O THR A 171 N THR A 65 SHEET 4 B 5 TYR A 160 THR A 161 -1 N TYR A 160 O LEU A 172 SHEET 5 B 5 LYS A 135 LYS A 136 -1 N LYS A 135 O THR A 161 SHEET 1 C 2 VAL A 111 VAL A 114 0 SHEET 2 C 2 LYS A 117 LEU A 120 -1 O LYS A 117 N VAL A 114 SSBOND 1 CYS A 22 CYS A 57 1555 1555 2.03 SSBOND 2 CYS A 122 CYS A 162 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1