HEADER VIRAL PROTEIN 21-DEC-13 2MIZ TITLE STRUCTURE OF THE M04/GP34 MOUSE CYTOMEGALOVIRUS IMMUNOEVASIN CORE TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: M04 IMMUNOEVASIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE CYTOMEGALOVIRUS; SOURCE 3 ORGANISM_COMMON: MUHV-1; SOURCE 4 ORGANISM_TAXID: 69156; SOURCE 5 STRAIN: K181; SOURCE 6 GENE: M04; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PLASMID KEYWDS MHC CLASS-I REGULATION, IMMUNOGLOBULIN-LIKE FOLD, NATURAL KILLER KEYWDS 2 DECOY, MISSING-SELF, ROSETTA MODELLING, ILV LABELLING, RESIDUAL KEYWDS 3 DIPOLAR COUPLINGS, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR N.G.SGOURAKIS,K.NATARAJAN,D.H.MARGULIES,A.BAX REVDAT 2 22-OCT-14 2MIZ 1 JRNL REVDAT 1 16-JUL-14 2MIZ 0 JRNL AUTH N.G.SGOURAKIS,K.NATARAJAN,J.YING,B.VOGELI,L.F.BOYD, JRNL AUTH 2 D.H.MARGULIES,A.BAX JRNL TITL THE STRUCTURE OF MOUSE CYTOMEGALOVIRUS M04 PROTEIN OBTAINED JRNL TITL 2 FROM SPARSE NMR DATA REVEALS A CONSERVED FOLD OF THE M02-M06 JRNL TITL 3 VIRAL IMMUNE MODULATOR FAMILY. JRNL REF STRUCTURE V. 22 1263 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 25126960 JRNL DOI 10.1016/J.STR.2014.05.018 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE HIGH DEGREE OF ORDER OBTAINED FOR REMARK 3 RESIDUES 21-22 AND 175-176 IN THE DEPOSITED ENSEMBLE IS REMARK 3 INCONSISTENT WITH THE CHEMICAL SHIFT-DERIVED ORDER PARAMETERS (< REMARK 3 0.7) THAT SUGGEST SOME RESIDUAL MOBILITY FOR THESE RESIDUES REMARK 4 REMARK 4 2MIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB103669. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285; 285 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 0.110; 0.260 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM MM SODIUM PHOSPHATE, 5 % [U REMARK 210 -99% 2H] D2O, 50 MM SODIUM REMARK 210 CHLORIDE, 0.2-0.5 MM [U-13C; U- REMARK 210 15N; U-2H] PROTEIN, 95% H2O/5% REMARK 210 D2O; 20MM MM SODIUM PHOSPHATE, 5 REMARK 210 % [U-99% 2H] D2O, 50 MM SODIUM REMARK 210 CHLORIDE, 0.2-0.5 MM [U-13C; U- REMARK 210 15N; U-2H; ILVMETHYL-1H] PROTEIN, REMARK 210 95% H2O/5% D2O; 20MM MM SODIUM REMARK 210 PHOSPHATE, 5 % [U-99% 2H] D2O, 50 REMARK 210 MM SODIUM CHLORIDE, 0.2-0.5 MM [U REMARK 210 -15N; U-2H] PROTEIN, 5.5 % AC/BIS REMARK 210 -AC, 20 % DADMAC, 95% H2O/5% D2O; REMARK 210 20MM MM SODIUM PHOSPHATE, 5 % [U- REMARK 210 99% 2H] D2O, 200 MM SODIUM REMARK 210 CHLORIDE, 0.2-0.5 MM [U-15N; U- REMARK 210 2H] PROTEIN, 7.5 % PF1 PHAGE, 95% REMARK 210 H2O/5% D2O; 20MM MM SODIUM REMARK 210 PHOSPHATE, 5 % [U-99% 2H] D2O, 50 REMARK 210 MM SODIUM CHLORIDE, 0.2-0.5 MM REMARK 210 [ILVMETHYL-13C; U-15N; U-2H; REMARK 210 ILVMETHYL-1H] PROTEIN, 95% H2O/5% REMARK 210 D2O; 20MM MM SODIUM PHOSPHATE, 5 REMARK 210 % [U-99% 2H] D2O, 50 MM SODIUM REMARK 210 CHLORIDE, 0.2-0.5 MM [U-15N; U- REMARK 210 2H] PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N TROSY-HSQC; 3D HNCA; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CA)CO; REMARK 210 2D 1H-15N ARTSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC (HCH); 3D 1H-13C NOESY REMARK 210 ALIPHATIC (CCH); 2D 1H-13C HMQC REMARK 210 METHYL; 3D 1H-15N NOESY (HCH); 3D REMARK 210 1H-15N NOESY (HCN); 3D 1H-15N REMARK 210 NOESY (HNH); 3D 1H-15N NOESY REMARK 210 (NNH); SIM-HMCM(CGCBCA)CO; REMARK 210 HMCM(CG)CBCA REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, TOPSPIN 3.1, CS REMARK 210 -ROSETTA 3.0 REMARK 210 METHOD USED : RASREC REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 ARG A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 5 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 GLU A 8 REMARK 465 LYS A 9 REMARK 465 MET A 10 REMARK 465 GLN A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 TYR A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 16 REMARK 465 LYS A 17 REMARK 465 MET A 18 REMARK 465 LYS A 19 REMARK 465 TYR A 20 REMARK 465 VAL A 177 REMARK 465 PRO A 178 REMARK 465 ASP A 179 REMARK 465 LEU A 180 REMARK 465 THR A 181 REMARK 465 PRO A 182 REMARK 465 PRO A 183 REMARK 465 ARG A 184 REMARK 465 ARG A 185 REMARK 465 ASP A 186 REMARK 465 GLU A 187 REMARK 465 PHE A 188 REMARK 465 TYR A 189 REMARK 465 THR A 190 REMARK 465 LYS A 191 REMARK 465 ASN A 192 REMARK 465 GLU A 193 REMARK 465 SER A 194 REMARK 465 PRO A 195 REMARK 465 ASN A 196 REMARK 465 THR A 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 73 144.20 179.49 REMARK 500 1 ARG A 101 -84.85 -142.25 REMARK 500 1 TYR A 175 112.78 -162.46 REMARK 500 2 VAL A 73 143.24 -179.27 REMARK 500 2 ARG A 101 -84.95 -141.90 REMARK 500 2 TYR A 175 113.79 -162.11 REMARK 500 3 SER A 79 -169.51 -117.57 REMARK 500 4 ARG A 42 148.76 178.53 REMARK 500 4 ASP A 72 45.86 -80.71 REMARK 500 4 HIS A 98 64.38 -102.66 REMARK 500 5 ARG A 42 148.00 179.93 REMARK 500 5 HIS A 98 63.97 -102.37 REMARK 500 6 ARG A 42 147.85 179.75 REMARK 500 6 ASN A 55 83.98 -67.02 REMARK 500 6 LEU A 88 -60.82 -99.90 REMARK 500 7 ARG A 42 148.86 178.59 REMARK 500 7 ASN A 55 83.45 -68.16 REMARK 500 7 VAL A 73 144.14 178.59 REMARK 500 7 HIS A 98 64.57 -102.09 REMARK 500 8 VAL A 73 143.58 179.55 REMARK 500 8 ARG A 101 -84.94 -142.23 REMARK 500 8 TYR A 175 113.43 -162.14 REMARK 500 9 VAL A 73 144.04 177.52 REMARK 500 9 ARG A 101 -80.59 -104.04 REMARK 500 9 TYR A 175 113.61 -162.16 REMARK 500 10 ARG A 42 148.95 178.70 REMARK 500 10 ASN A 55 82.72 -66.41 REMARK 500 10 VAL A 73 143.95 178.25 REMARK 500 10 HIS A 98 63.51 -102.45 REMARK 500 10 TYR A 175 113.43 -162.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19699 RELATED DB: BMRB DBREF 2MIZ A 1 197 UNP A2Q6L0 A2Q6L0_MUHVK 23 219 SEQADV 2MIZ MET A -2 UNP A2Q6L0 EXPRESSION TAG SEQADV 2MIZ ALA A -1 UNP A2Q6L0 EXPRESSION TAG SEQADV 2MIZ SER A 0 UNP A2Q6L0 EXPRESSION TAG SEQADV 2MIZ SER A 7 UNP A2Q6L0 CYS 29 ENGINEERED MUTATION SEQADV 2MIZ VAL A 44 UNP A2Q6L0 ILE 66 ENGINEERED MUTATION SEQRES 1 A 200 MET ALA SER SER ARG ASN ASP ASN GLU SER GLU LYS MET SEQRES 2 A 200 GLN LYS GLU TYR LYS GLU LYS MET LYS TYR ARG HIS SER SEQRES 3 A 200 LEU GLY CYS TYR PHE LYS GLY ILE ASN PRO THR LYS VAL SEQRES 4 A 200 PRO SER SER ASP PRO ARG THR VAL LEU LYS CYS THR LEU SEQRES 5 A 200 PRO ASP VAL LYS VAL ASN ALA SER TRP THR LEU GLU TRP SEQRES 6 A 200 VAL VAL VAL ASN LEU HIS THR SER VAL ASP VAL THR SER SEQRES 7 A 200 TYR TYR GLU SER SER PRO ASN SER GLU PRO ARG PHE LEU SEQRES 8 A 200 ARG ALA ILE LEU ASN PHE THR PRO MET HIS GLY LEU ARG SEQRES 9 A 200 THR LYS ASN LEU LEU LYS VAL LYS ASP GLY PHE GLN VAL SEQRES 10 A 200 ASP ASN SER THR ASP ASN GLY ASN GLY GLY ASN LEU TYR SEQRES 11 A 200 VAL TYR PRO ASN ALA THR THR GLY SER ALA ASP SER VAL SEQRES 12 A 200 ARG CYS ARG LEU ARG MET CYS PRO TRP THR SER ASN SER SEQRES 13 A 200 LYS MET THR ALA PRO ASP GLU GLU MET LEU ARG LYS MET SEQRES 14 A 200 SER GLU VAL LEU ASN LEU PRO ASN TYR GLY VAL PRO ASP SEQRES 15 A 200 LEU THR PRO PRO ARG ARG ASP GLU PHE TYR THR LYS ASN SEQRES 16 A 200 GLU SER PRO ASN THR HELIX 1 1 LYS A 107 ASP A 110 5 4 HELIX 2 2 THR A 133 ASP A 138 1 6 HELIX 3 3 ASP A 159 MET A 166 1 8 HELIX 4 4 MET A 166 ASN A 171 1 6 SHEET 1 C 4 LEU A 106 VAL A 108 0 SSBOND 1 CYS A 26 CYS A 147 1555 1555 2.08 SSBOND 2 CYS A 47 CYS A 142 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1