HEADER TRANSPORT PROTEIN 26-DEC-13 2MJ7 TITLE SOLUTION NMR STRUCTURE OF BETA-ADAPTIN APPENDAGE DOMAIN OF HUMAN TITLE 2 ADAPTOR PROTEIN COMPLEX 4 SUBUNIT BETA, NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM (NESG) TARGET HR8998C COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-4 COMPLEX SUBUNIT BETA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 610-739; COMPND 5 SYNONYM: AP-4 ADAPTER COMPLEX SUBUNIT BETA, ADAPTER-RELATED PROTEIN COMPND 6 COMPLEX 4 SUBUNIT BETA-1, BETA SUBUNIT OF AP-4, BETA4-ADAPTIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AP4B1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,D.J.ROTSHTEYN,K.PEDERSON,R.SHASTRY,M.MAGLAQUI,H.JANJUA, AUTHOR 2 R.XIAO,J.K.EVERETT,G.T.MONTELIONE,J.H.PRESTEGARD,T.SZYPERSKI, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2MJ7 1 REMARK SEQADV REVDAT 1 29-JAN-14 2MJ7 0 JRNL AUTH A.ELETSKY,D.J.ROTSHTEYN,K.PEDERSON,R.SHASTRY,M.MAGLAQUI, JRNL AUTH 2 H.JANJUA,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,J.H.PRESTEGARD, JRNL AUTH 3 T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF BETA-ADAPTIN APPENDAGE DOMAIN OF JRNL TITL 2 HUMAN ADAPTOR PROTEIN COMPLEX 4 SUBUNIT BETA, NORTHEAST JRNL TITL 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HR8998C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3, CYANA 3.0, AS-DP 1.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE (AS-DP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 BY RUNNING CYANA AND ASDP IN PARALLEL USING NOE-BASED REMARK 3 CONSTRAINTS. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED REMARK 3 IN ITERATIVE REFINEMENT WITH CYANA, WITH PHI, PSI AND CHI1 REMARK 3 DIHEDRAL ANGLE CONSTRAINTS FROM TALOSN, AS WELL AS RDC REMARK 3 CONSTRAINTS FROM TWO ALIGNMENT MEDIA ADDED AT LATER STAGES. THE REMARK 3 20 CONFORMERS OUT OF 100 WITH THE LOWEST TARGET FUNCTION WERE REMARK 3 FURTHER REFINED BY SIMULATED ANNEALING IN EXPLICIT WATER BATH REMARK 3 USING THE PROGRAM CNS WITH PARAM19 FORCE FIELD. REMARK 4 REMARK 4 2MJ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000103677. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM HR8998C NC5, 90% H2O/10% REMARK 210 D2O; 0.2 MM HR8998C NC5, 4% PEG/ REMARK 210 HEXANOL, 80% H2O/20% D2O; 0.2 MM REMARK 210 HR8998C NC5, PF1 PHAGE, 80% H2O/ REMARK 210 20% D2O; 0.2 MM HR8998C NC, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D HN(CA)CO; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 HBHA(CO)NH; 3D HA(CO)NH; 3D (H) REMARK 210 CCH-TOCSY ALIPHATIC; 3D (H)CCH- REMARK 210 COSY ALIPHATIC; 3D (H)CCH-COSY REMARK 210 AROMATIC; 2D 1H-15N LONG-RANGE REMARK 210 HSQC; 2D 1H-15N J-MODULATED HSQC; REMARK 210 2D 1H-13C CT-HSQC METHYL REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DD2 REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.3, CYANA 3.0, AS-DP 1.0, REMARK 210 AUTOASSIGN 2.3.0, NMRPIPE, XEASY, REMARK 210 PROSA 6.4, VNMRJ, SPARKY, REMARK 210 TALOSN, CARA 1.8.4, PSVS 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 97.68 -69.52 REMARK 500 1 GLN A 12 106.59 -160.92 REMARK 500 1 ASN A 25 -92.17 60.45 REMARK 500 1 PRO A 103 -76.19 -46.56 REMARK 500 1 LYS A 140 -53.10 -171.25 REMARK 500 2 HIS A 4 93.39 -166.10 REMARK 500 2 HIS A 10 89.48 -162.74 REMARK 500 2 MET A 11 19.48 -152.13 REMARK 500 2 ASN A 25 -88.86 60.47 REMARK 500 2 LYS A 140 -68.82 -166.90 REMARK 500 3 HIS A 7 65.12 -154.79 REMARK 500 3 LEU A 20 97.07 -67.42 REMARK 500 3 PRO A 24 77.37 -64.43 REMARK 500 3 GLU A 53 67.40 63.59 REMARK 500 3 GLU A 138 13.88 -172.48 REMARK 500 3 ILE A 139 95.02 56.15 REMARK 500 3 LYS A 140 -78.74 -73.68 REMARK 500 4 HIS A 3 80.15 -68.92 REMARK 500 4 HIS A 4 30.16 -85.72 REMARK 500 4 PRO A 15 97.23 -59.72 REMARK 500 4 SER A 17 119.46 -163.00 REMARK 500 4 ALA A 19 -169.99 -164.94 REMARK 500 4 PRO A 24 81.13 -63.96 REMARK 500 4 GLU A 138 92.27 52.84 REMARK 500 4 ILE A 139 100.70 -58.15 REMARK 500 4 LYS A 140 76.80 -167.92 REMARK 500 5 HIS A 3 70.22 57.35 REMARK 500 5 HIS A 5 56.13 -109.44 REMARK 500 5 SER A 9 100.56 -59.90 REMARK 500 5 GLN A 12 114.77 -164.57 REMARK 500 5 GLU A 13 99.77 -166.33 REMARK 500 5 GLN A 27 99.12 -62.65 REMARK 500 5 SER A 106 92.48 -63.76 REMARK 500 5 GLU A 138 179.12 71.38 REMARK 500 6 HIS A 5 63.48 -150.77 REMARK 500 6 HIS A 7 106.07 -169.98 REMARK 500 6 PRO A 15 93.68 -62.70 REMARK 500 6 ASP A 16 108.39 -59.65 REMARK 500 7 HIS A 3 -35.53 -144.80 REMARK 500 7 HIS A 4 100.37 62.79 REMARK 500 7 HIS A 6 90.92 -67.72 REMARK 500 7 HIS A 7 118.95 -171.01 REMARK 500 7 SER A 9 98.12 -60.84 REMARK 500 7 PRO A 15 97.77 -65.80 REMARK 500 7 ASN A 25 -76.53 -78.88 REMARK 500 7 SER A 106 91.20 -67.18 REMARK 500 8 HIS A 6 91.09 -68.41 REMARK 500 8 HIS A 8 87.55 -68.28 REMARK 500 8 SER A 9 119.42 -175.54 REMARK 500 8 GLN A 12 115.63 -160.04 REMARK 500 REMARK 500 THIS ENTRY HAS 124 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NESG-HR8998C RELATED DB: TARGETDB REMARK 900 RELATED ID: 19709 RELATED DB: BMRB DBREF 2MJ7 A 12 141 UNP Q9Y6B7 AP4B1_HUMAN 610 739 SEQADV 2MJ7 MET A 1 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 GLY A 2 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 HIS A 3 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 HIS A 4 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 HIS A 5 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 HIS A 6 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 HIS A 7 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 HIS A 8 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 SER A 9 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 HIS A 10 UNP Q9Y6B7 EXPRESSION TAG SEQADV 2MJ7 MET A 11 UNP Q9Y6B7 EXPRESSION TAG SEQRES 1 A 141 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET GLN GLU SEQRES 2 A 141 LEU PRO ASP SER GLY ALA LEU MET LEU VAL PRO ASN ARG SEQRES 3 A 141 GLN LEU THR ALA ASP TYR PHE GLU LYS THR TRP LEU SER SEQRES 4 A 141 LEU LYS VAL ALA HIS GLN GLN VAL LEU PRO TRP ARG GLY SEQRES 5 A 141 GLU PHE HIS PRO ASP THR LEU GLN MET ALA LEU GLN VAL SEQRES 6 A 141 VAL ASN ILE GLN THR ILE ALA MET SER ARG ALA GLY SER SEQRES 7 A 141 ARG PRO TRP LYS ALA TYR LEU SER ALA GLN ASP ASP THR SEQRES 8 A 141 GLY CYS LEU PHE LEU THR GLU LEU LEU LEU GLU PRO GLY SEQRES 9 A 141 ASN SER GLU MET GLN ILE SER VAL LYS GLN ASN GLU ALA SEQRES 10 A 141 ARG THR GLU THR LEU ASN SER PHE ILE SER VAL LEU GLU SEQRES 11 A 141 THR VAL ILE GLY THR ILE GLU GLU ILE LYS SER HELIX 1 1 THR A 29 LEU A 40 1 12 HELIX 2 2 HIS A 55 VAL A 66 1 12 HELIX 3 3 ARG A 118 GLU A 138 1 21 SHEET 1 A 5 LEU A 22 VAL A 23 0 SHEET 2 A 5 TRP A 81 ASP A 89 -1 O GLN A 88 N VAL A 23 SHEET 3 A 5 LEU A 94 LEU A 101 -1 O PHE A 95 N ALA A 87 SHEET 4 A 5 GLU A 107 GLN A 114 -1 O LYS A 113 N LEU A 96 SHEET 5 A 5 HIS A 44 PRO A 49 -1 N LEU A 48 O MET A 108 SHEET 1 B 3 LEU A 22 VAL A 23 0 SHEET 2 B 3 TRP A 81 ASP A 89 -1 O GLN A 88 N VAL A 23 SHEET 3 B 3 GLN A 69 MET A 73 -1 N ILE A 71 O TYR A 84 CISPEP 1 ARG A 79 PRO A 80 1 -1.36 CISPEP 2 ARG A 79 PRO A 80 2 1.50 CISPEP 3 ARG A 79 PRO A 80 3 8.10 CISPEP 4 ARG A 79 PRO A 80 4 6.24 CISPEP 5 ARG A 79 PRO A 80 5 2.29 CISPEP 6 ARG A 79 PRO A 80 6 -2.20 CISPEP 7 ARG A 79 PRO A 80 7 -0.36 CISPEP 8 ARG A 79 PRO A 80 8 2.85 CISPEP 9 ARG A 79 PRO A 80 9 1.42 CISPEP 10 ARG A 79 PRO A 80 10 -1.87 CISPEP 11 ARG A 79 PRO A 80 11 3.55 CISPEP 12 ARG A 79 PRO A 80 12 1.83 CISPEP 13 ARG A 79 PRO A 80 13 -0.66 CISPEP 14 ARG A 79 PRO A 80 14 3.68 CISPEP 15 ARG A 79 PRO A 80 15 5.86 CISPEP 16 ARG A 79 PRO A 80 16 -0.81 CISPEP 17 ARG A 79 PRO A 80 17 -2.34 CISPEP 18 ARG A 79 PRO A 80 18 5.90 CISPEP 19 ARG A 79 PRO A 80 19 -1.33 CISPEP 20 ARG A 79 PRO A 80 20 10.84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1