data_2MJH # _entry.id 2MJH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MJH pdb_00002mjh 10.2210/pdb2mjh/pdb RCSB RCSB103687 ? ? BMRB 19726 ? ? WWPDB D_1000103687 ? ? # _pdbx_database_related.db_id 19726 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MJH _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2014-01-09 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Daubner, G.M.' 1 'Allain, F.H.-T.' 2 # _citation.id primary _citation.title 'Structural and functional implications of the QUA2 domain on RNA recognition by GLD-1.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 8092 _citation.page_last 8105 _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24838563 _citation.pdbx_database_id_DOI 10.1093/nar/gku445 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Daubner, G.M.' 1 ? primary 'Brummer, A.' 2 ? primary 'Tocchini, C.' 3 ? primary 'Gerhardy, S.' 4 ? primary 'Ciosk, R.' 5 ? primary 'Zavolan, M.' 6 ? primary 'Allain, F.H.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Female germline-specific tumor suppressor gld-1' 16075.546 1 ? ? 'KH-QUA2 domain of GLD-1, UNP residues 195-336' ? 2 polymer syn "5'-CUACUCAUAU-3'" 3082.868 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Defective in germ line development protein 1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDL HVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSPNPA ; ;LPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDL HVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSPNPA ; A ? 2 polyribonucleotide no no CUACUCAUAU CUACUCAUAU B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 PRO n 1 3 GLU n 1 4 PRO n 1 5 ALA n 1 6 GLY n 1 7 ASP n 1 8 MET n 1 9 ILE n 1 10 SER n 1 11 ILE n 1 12 THR n 1 13 GLU n 1 14 LYS n 1 15 ILE n 1 16 TYR n 1 17 VAL n 1 18 PRO n 1 19 LYS n 1 20 ASN n 1 21 GLU n 1 22 TYR n 1 23 PRO n 1 24 ASP n 1 25 TYR n 1 26 ASN n 1 27 PHE n 1 28 VAL n 1 29 GLY n 1 30 ARG n 1 31 ILE n 1 32 LEU n 1 33 GLY n 1 34 PRO n 1 35 ARG n 1 36 GLY n 1 37 MET n 1 38 THR n 1 39 ALA n 1 40 LYS n 1 41 GLN n 1 42 LEU n 1 43 GLU n 1 44 GLN n 1 45 ASP n 1 46 THR n 1 47 GLY n 1 48 CYS n 1 49 LYS n 1 50 ILE n 1 51 MET n 1 52 VAL n 1 53 ARG n 1 54 GLY n 1 55 LYS n 1 56 GLY n 1 57 SER n 1 58 MET n 1 59 ARG n 1 60 ASP n 1 61 LYS n 1 62 SER n 1 63 LYS n 1 64 GLU n 1 65 SER n 1 66 ALA n 1 67 HIS n 1 68 ARG n 1 69 GLY n 1 70 LYS n 1 71 ALA n 1 72 ASN n 1 73 TRP n 1 74 GLU n 1 75 HIS n 1 76 LEU n 1 77 GLU n 1 78 ASP n 1 79 ASP n 1 80 LEU n 1 81 HIS n 1 82 VAL n 1 83 LEU n 1 84 VAL n 1 85 GLN n 1 86 CYS n 1 87 GLU n 1 88 ASP n 1 89 THR n 1 90 GLU n 1 91 ASN n 1 92 ARG n 1 93 VAL n 1 94 HIS n 1 95 ILE n 1 96 LYS n 1 97 LEU n 1 98 GLN n 1 99 ALA n 1 100 ALA n 1 101 LEU n 1 102 GLU n 1 103 GLN n 1 104 VAL n 1 105 LYS n 1 106 LYS n 1 107 LEU n 1 108 LEU n 1 109 ILE n 1 110 PRO n 1 111 ALA n 1 112 PRO n 1 113 GLU n 1 114 GLY n 1 115 THR n 1 116 ASP n 1 117 GLU n 1 118 LEU n 1 119 LYS n 1 120 ARG n 1 121 LYS n 1 122 GLN n 1 123 LEU n 1 124 MET n 1 125 GLU n 1 126 LEU n 1 127 ALA n 1 128 ILE n 1 129 ILE n 1 130 ASN n 1 131 GLY n 1 132 THR n 1 133 TYR n 1 134 ARG n 1 135 PRO n 1 136 MET n 1 137 LYS n 1 138 SER n 1 139 PRO n 1 140 ASN n 1 141 PRO n 1 142 ALA n 2 1 C n 2 2 U n 2 3 A n 2 4 C n 2 5 U n 2 6 C n 2 7 A n 2 8 U n 2 9 A n 2 10 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name nematode _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'gld-1, T23G11.3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caenorhabditis elegans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6239 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pTYB1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Purification via the IMPACT system (NEB) that results in the protein without any additional residues' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GLD1_CAEEL Q17339 1 ;LPEPAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDL HVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAIINGTYRPMKSPNPA ; 195 ? 2 PDB 2MJH 2MJH 2 CUACUCAUAU ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MJH A 1 ? 142 ? Q17339 195 ? 336 ? 195 336 2 2 2MJH B 1 ? 10 ? 2MJH 16 ? 25 ? 16 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 4 '2D 1H-13C HSQC' 1 3 2 '3D HNCA' 1 4 2 '3D HN(CO)CA' 1 5 2 '3D HNCO' 1 6 2 '3D HN(CA)CO' 1 7 2 '3D CBCA(CO)NH' 1 8 2 '3D HCCH-TOCSY' 1 9 1 '3D 1H-15N NOESY' 1 10 2 '3D 1H-13C NOESY' 1 11 3 '2D 1H-1H TOCSY' 1 12 3 '2D 1H-1H NOESY' 1 13 3 '2D F1f F2f 1H-1H NOESY' 1 14 1 '2D 1H-13C HSQC' 1 15 4 '2D F2f 1H-1H NOESY' 1 16 4 '3D F1f F2e 1H-1H NOESY' 1 17 1 'Long-range 1H-15N HSQC' 1 18 1 '3D HNHA' 1 19 6 '2D 1H-15N IPAP HSQC' 1 20 5 '2D 1H-13C HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.17 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.45 mM [U-15N] GLD-1 (aa 195-336), 0.45 mM 5'-CUACUCAUAU-3', 50 mM sodium chloride, 20 mM sodium phosphate, 3 mM DTT, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.45 mM [U-13C; U-15N] GLD-1 (aa 195-336), 0.45 mM 5'-CUACUCAUAU-3', 50 mM sodium chloride, 20 mM sodium phosphate, 3 mM DTT, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;0.45 mM [U-15N] GLD-1 (aa 195-336), 0.45 mM 5'-CUACUCAUAU-3', 50 mM sodium chloride, 20 mM sodium phosphate, 3 mM DTT, 100% D2O ; 3 '100% D2O' ;0.45 mM [U-13C; U-15N] GLD-1 (aa 195-336), 0.45 mM 5'-CUACUCAUAU-3', 50 mM sodium chloride, 20 mM sodium phosphate, 3 mM DTT, 100% D2O ; 4 '100% D2O' ;0.45 mM [U-10% 13C; U-100% 15N] GLD-1 (aa 195-336), 0.45 mM 5'-CUACUCAUAU-3', 50 mM sodium chloride, 20 mM sodium phosphate, 3 mM DTT, 90% H2O/10% D2O ; 5 '90% H2O/10% D2O' ;0.45 mM [U-15N] GLD-1 (aa 195-336), 0.45 mM 5'-CUACUCAUAU-3', 50 mM sodium chloride, 20 mM sodium phosphate, 3 mM DTT, 14 mg/mL Pf1 phage, 90% H2O/10% D2O ; 6 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker AVANCE 1 'Bruker Avance' 600 Bruker AVANCE 2 'Bruker Avance' 700 Bruker AVANCE 3 'Bruker Avance' 750 Bruker AVANCE 4 'Bruker Avance' 900 Bruker AVANCE 5 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MJH _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'ff99SB force-field/ implicit water' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'Lowest energy and NOE violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 250 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MJH _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MJH _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement Amber 9 1 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0 2 Goddard 'chemical shift assignment' Sparky 3.114 3 'Bruker Biospin' collection TopSpin 3.0 4 'Cornilescu, Delaglio and Bax' collection TALOS + 5 'Laskowski and MacArthur' 'data analysis' ProcheckNMR 3.5.4 6 'Herrmann, Guntert and Wuthrich' 'peak picking' ATNOSCANDID 2.1 7 'Zweckstetter, Hummer and Bax' 'data analysis' PALES 2.1 8 Vriend 'data analysis' 'WHAT IF' 10.1.1 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MJH _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MJH _struct.title 'Solution structure of the GLD-1 RNA-binding domain in complex with RNA' _struct.pdbx_model_details 'closest to the average, model15' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MJH _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text 'GLD-1, KH-QUA2 domain, STAR protein family, RNA regulation, tra-2, RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 26 ? GLY A 33 ? ASN A 220 GLY A 227 1 ? 8 HELX_P HELX_P2 2 GLY A 36 ? THR A 46 ? GLY A 230 THR A 240 1 ? 11 HELX_P HELX_P3 3 GLY A 54 ? MET A 58 ? GLY A 248 MET A 252 5 ? 5 HELX_P HELX_P4 4 ARG A 92 ? LEU A 108 ? ARG A 286 LEU A 302 1 ? 17 HELX_P HELX_P5 5 ASP A 116 ? ASN A 130 ? ASP A 310 ASN A 324 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id hydrog1 _struct_conn.conn_type_id hydrog _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id U _struct_conn.ptnr1_label_seq_id 2 _struct_conn.ptnr1_label_atom_id O2 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id C _struct_conn.ptnr2_label_seq_id 4 _struct_conn.ptnr2_label_atom_id N4 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id U _struct_conn.ptnr1_auth_seq_id 17 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id C _struct_conn.ptnr2_auth_seq_id 19 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details 'U-C MISPAIR' _struct_conn.pdbx_dist_value ? _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 8 ? TYR A 16 ? MET A 202 TYR A 210 A 2 HIS A 81 ? THR A 89 ? HIS A 275 THR A 283 A 3 LYS A 49 ? ARG A 53 ? LYS A 243 ARG A 247 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 11 ? N ILE A 205 O CYS A 86 ? O CYS A 280 A 2 3 O LEU A 83 ? O LEU A 277 N MET A 51 ? N MET A 245 # _atom_sites.entry_id 2MJH _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 195 195 LEU LEU A . n A 1 2 PRO 2 196 196 PRO PRO A . n A 1 3 GLU 3 197 197 GLU GLU A . n A 1 4 PRO 4 198 198 PRO PRO A . n A 1 5 ALA 5 199 199 ALA ALA A . n A 1 6 GLY 6 200 200 GLY GLY A . n A 1 7 ASP 7 201 201 ASP ASP A . n A 1 8 MET 8 202 202 MET MET A . n A 1 9 ILE 9 203 203 ILE ILE A . n A 1 10 SER 10 204 204 SER SER A . n A 1 11 ILE 11 205 205 ILE ILE A . n A 1 12 THR 12 206 206 THR THR A . n A 1 13 GLU 13 207 207 GLU GLU A . n A 1 14 LYS 14 208 208 LYS LYS A . n A 1 15 ILE 15 209 209 ILE ILE A . n A 1 16 TYR 16 210 210 TYR TYR A . n A 1 17 VAL 17 211 211 VAL VAL A . n A 1 18 PRO 18 212 212 PRO PRO A . n A 1 19 LYS 19 213 213 LYS LYS A . n A 1 20 ASN 20 214 214 ASN ASN A . n A 1 21 GLU 21 215 215 GLU GLU A . n A 1 22 TYR 22 216 216 TYR TYR A . n A 1 23 PRO 23 217 217 PRO PRO A . n A 1 24 ASP 24 218 218 ASP ASP A . n A 1 25 TYR 25 219 219 TYR TYR A . n A 1 26 ASN 26 220 220 ASN ASN A . n A 1 27 PHE 27 221 221 PHE PHE A . n A 1 28 VAL 28 222 222 VAL VAL A . n A 1 29 GLY 29 223 223 GLY GLY A . n A 1 30 ARG 30 224 224 ARG ARG A . n A 1 31 ILE 31 225 225 ILE ILE A . n A 1 32 LEU 32 226 226 LEU LEU A . n A 1 33 GLY 33 227 227 GLY GLY A . n A 1 34 PRO 34 228 228 PRO PRO A . n A 1 35 ARG 35 229 229 ARG ARG A . n A 1 36 GLY 36 230 230 GLY GLY A . n A 1 37 MET 37 231 231 MET MET A . n A 1 38 THR 38 232 232 THR THR A . n A 1 39 ALA 39 233 233 ALA ALA A . n A 1 40 LYS 40 234 234 LYS LYS A . n A 1 41 GLN 41 235 235 GLN GLN A . n A 1 42 LEU 42 236 236 LEU LEU A . n A 1 43 GLU 43 237 237 GLU GLU A . n A 1 44 GLN 44 238 238 GLN GLN A . n A 1 45 ASP 45 239 239 ASP ASP A . n A 1 46 THR 46 240 240 THR THR A . n A 1 47 GLY 47 241 241 GLY GLY A . n A 1 48 CYS 48 242 242 CYS CYS A . n A 1 49 LYS 49 243 243 LYS LYS A . n A 1 50 ILE 50 244 244 ILE ILE A . n A 1 51 MET 51 245 245 MET MET A . n A 1 52 VAL 52 246 246 VAL VAL A . n A 1 53 ARG 53 247 247 ARG ARG A . n A 1 54 GLY 54 248 248 GLY GLY A . n A 1 55 LYS 55 249 249 LYS LYS A . n A 1 56 GLY 56 250 250 GLY GLY A . n A 1 57 SER 57 251 251 SER SER A . n A 1 58 MET 58 252 252 MET MET A . n A 1 59 ARG 59 253 253 ARG ARG A . n A 1 60 ASP 60 254 254 ASP ASP A . n A 1 61 LYS 61 255 255 LYS LYS A . n A 1 62 SER 62 256 256 SER SER A . n A 1 63 LYS 63 257 257 LYS LYS A . n A 1 64 GLU 64 258 258 GLU GLU A . n A 1 65 SER 65 259 259 SER SER A . n A 1 66 ALA 66 260 260 ALA ALA A . n A 1 67 HIS 67 261 261 HIS HIS A . n A 1 68 ARG 68 262 262 ARG ARG A . n A 1 69 GLY 69 263 263 GLY GLY A . n A 1 70 LYS 70 264 264 LYS LYS A . n A 1 71 ALA 71 265 265 ALA ALA A . n A 1 72 ASN 72 266 266 ASN ASN A . n A 1 73 TRP 73 267 267 TRP TRP A . n A 1 74 GLU 74 268 268 GLU GLU A . n A 1 75 HIS 75 269 269 HIS HIS A . n A 1 76 LEU 76 270 270 LEU LEU A . n A 1 77 GLU 77 271 271 GLU GLU A . n A 1 78 ASP 78 272 272 ASP ASP A . n A 1 79 ASP 79 273 273 ASP ASP A . n A 1 80 LEU 80 274 274 LEU LEU A . n A 1 81 HIS 81 275 275 HIS HIS A . n A 1 82 VAL 82 276 276 VAL VAL A . n A 1 83 LEU 83 277 277 LEU LEU A . n A 1 84 VAL 84 278 278 VAL VAL A . n A 1 85 GLN 85 279 279 GLN GLN A . n A 1 86 CYS 86 280 280 CYS CYS A . n A 1 87 GLU 87 281 281 GLU GLU A . n A 1 88 ASP 88 282 282 ASP ASP A . n A 1 89 THR 89 283 283 THR THR A . n A 1 90 GLU 90 284 284 GLU GLU A . n A 1 91 ASN 91 285 285 ASN ASN A . n A 1 92 ARG 92 286 286 ARG ARG A . n A 1 93 VAL 93 287 287 VAL VAL A . n A 1 94 HIS 94 288 288 HIS HIS A . n A 1 95 ILE 95 289 289 ILE ILE A . n A 1 96 LYS 96 290 290 LYS LYS A . n A 1 97 LEU 97 291 291 LEU LEU A . n A 1 98 GLN 98 292 292 GLN GLN A . n A 1 99 ALA 99 293 293 ALA ALA A . n A 1 100 ALA 100 294 294 ALA ALA A . n A 1 101 LEU 101 295 295 LEU LEU A . n A 1 102 GLU 102 296 296 GLU GLU A . n A 1 103 GLN 103 297 297 GLN GLN A . n A 1 104 VAL 104 298 298 VAL VAL A . n A 1 105 LYS 105 299 299 LYS LYS A . n A 1 106 LYS 106 300 300 LYS LYS A . n A 1 107 LEU 107 301 301 LEU LEU A . n A 1 108 LEU 108 302 302 LEU LEU A . n A 1 109 ILE 109 303 303 ILE ILE A . n A 1 110 PRO 110 304 304 PRO PRO A . n A 1 111 ALA 111 305 305 ALA ALA A . n A 1 112 PRO 112 306 306 PRO PRO A . n A 1 113 GLU 113 307 307 GLU GLU A . n A 1 114 GLY 114 308 308 GLY GLY A . n A 1 115 THR 115 309 309 THR THR A . n A 1 116 ASP 116 310 310 ASP ASP A . n A 1 117 GLU 117 311 311 GLU GLU A . n A 1 118 LEU 118 312 312 LEU LEU A . n A 1 119 LYS 119 313 313 LYS LYS A . n A 1 120 ARG 120 314 314 ARG ARG A . n A 1 121 LYS 121 315 315 LYS LYS A . n A 1 122 GLN 122 316 316 GLN GLN A . n A 1 123 LEU 123 317 317 LEU LEU A . n A 1 124 MET 124 318 318 MET MET A . n A 1 125 GLU 125 319 319 GLU GLU A . n A 1 126 LEU 126 320 320 LEU LEU A . n A 1 127 ALA 127 321 321 ALA ALA A . n A 1 128 ILE 128 322 322 ILE ILE A . n A 1 129 ILE 129 323 323 ILE ILE A . n A 1 130 ASN 130 324 324 ASN ASN A . n A 1 131 GLY 131 325 325 GLY GLY A . n A 1 132 THR 132 326 326 THR THR A . n A 1 133 TYR 133 327 327 TYR TYR A . n A 1 134 ARG 134 328 328 ARG ARG A . n A 1 135 PRO 135 329 329 PRO PRO A . n A 1 136 MET 136 330 330 MET MET A . n A 1 137 LYS 137 331 331 LYS LYS A . n A 1 138 SER 138 332 332 SER SER A . n A 1 139 PRO 139 333 333 PRO PRO A . n A 1 140 ASN 140 334 334 ASN ASN A . n A 1 141 PRO 141 335 335 PRO PRO A . n A 1 142 ALA 142 336 336 ALA ALA A . n B 2 1 C 1 16 16 C C B . n B 2 2 U 2 17 17 U U B . n B 2 3 A 3 18 18 A A B . n B 2 4 C 4 19 19 C C B . n B 2 5 U 5 20 20 U U B . n B 2 6 C 6 21 21 C C B . n B 2 7 A 7 22 22 A A B . n B 2 8 U 8 23 23 U U B . n B 2 9 A 9 24 24 A A B . n B 2 10 U 10 25 25 U U B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2830 ? 1 MORE -21 ? 1 'SSA (A^2)' 10370 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-05-28 2 'Structure model' 1 1 2014-07-02 3 'Structure model' 1 2 2014-07-30 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' audit_author 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_database_status 4 5 'Structure model' pdbx_nmr_software 5 5 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 5 5 'Structure model' '_pdbx_nmr_software.name' 6 5 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'GLD-1 (aa 195-336)-1' 0.45 ? mM '[U-15N]' 1 "5'-CUACUCAUAU-3'-2" 0.45 ? mM ? 1 'sodium chloride-3' 50 ? mM ? 1 'sodium phosphate-4' 20 ? mM ? 1 DTT-5 3 ? mM ? 1 'GLD-1 (aa 195-336)-6' 0.45 ? mM '[U-13C; U-15N]' 2 "5'-CUACUCAUAU-3'-7" 0.45 ? mM ? 2 'sodium chloride-8' 50 ? mM ? 2 'sodium phosphate-9' 20 ? mM ? 2 DTT-10 3 ? mM ? 2 'GLD-1 (aa 195-336)-11' 0.45 ? mM '[U-15N]' 3 "5'-CUACUCAUAU-3'-12" 0.45 ? mM ? 3 'sodium chloride-13' 50 ? mM ? 3 'sodium phosphate-14' 20 ? mM ? 3 DTT-15 3 ? mM ? 3 'GLD-1 (aa 195-336)-16' 0.45 ? mM '[U-13C; U-15N]' 4 "5'-CUACUCAUAU-3'-17" 0.45 ? mM ? 4 'sodium chloride-18' 50 ? mM ? 4 'sodium phosphate-19' 20 ? mM ? 4 DTT-20 3 ? mM ? 4 'GLD-1 (aa 195-336)-21' 0.45 ? mM '[U-10% 13C; U-100% 15N]' 5 "5'-CUACUCAUAU-3'-22" 0.45 ? mM ? 5 'sodium chloride-23' 50 ? mM ? 5 'sodium phosphate-24' 20 ? mM ? 5 DTT-25 3 ? mM ? 5 'GLD-1 (aa 195-336)-26' 0.45 ? mM '[U-15N]' 6 "5'-CUACUCAUAU-3'-27" 0.45 ? mM ? 6 'sodium chloride-28' 50 ? mM ? 6 'sodium phosphate-29' 20 ? mM ? 6 DTT-30 3 ? mM ? 6 'Pf1 phage-31' 14 ? mg/mL ? 6 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2MJH _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 2899 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 669 _pdbx_nmr_constraints.NOE_long_range_total_count 609 _pdbx_nmr_constraints.NOE_medium_range_total_count 628 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 841 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 5 "HO2'" B A 24 ? ? "O5'" B U 25 ? ? 1.60 2 13 "HO2'" B A 18 ? ? OP1 B C 19 ? ? 1.55 3 20 "HO2'" B A 24 ? ? "O5'" B U 25 ? ? 1.59 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 114.46 108.50 5.96 0.70 N 2 3 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 112.91 108.50 4.41 0.70 N 3 5 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 112.74 108.50 4.24 0.70 N 4 6 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.10 108.50 4.60 0.70 N 5 7 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.12 108.50 4.62 0.70 N 6 8 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 114.51 108.50 6.01 0.70 N 7 11 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.16 108.50 4.66 0.70 N 8 12 "C5'" B U 17 ? ? "C4'" B U 17 ? ? "C3'" B U 17 ? ? 106.68 115.20 -8.52 1.40 N 9 15 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.62 108.50 5.12 0.70 N 10 17 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.56 108.50 5.06 0.70 N 11 18 "O4'" B C 21 ? ? "C1'" B C 21 ? ? N1 B C 21 ? ? 113.15 108.50 4.65 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 199 ? ? -97.69 -158.63 2 1 PRO A 212 ? ? -75.28 32.95 3 1 ARG A 229 ? ? 47.95 25.61 4 1 SER A 256 ? ? 64.09 -3.30 5 1 ALA A 260 ? ? 52.41 15.09 6 1 ARG A 262 ? ? 55.49 87.98 7 1 TRP A 267 ? ? -80.59 35.49 8 1 GLU A 268 ? ? 54.07 -143.76 9 1 GLU A 284 ? ? -59.74 -8.66 10 1 MET A 330 ? ? 53.51 179.85 11 2 PRO A 212 ? ? -75.02 32.50 12 2 LYS A 213 ? ? -59.08 -8.23 13 2 ARG A 229 ? ? 49.13 23.33 14 2 ARG A 253 ? ? -145.06 -21.54 15 2 ASP A 254 ? ? -152.33 9.58 16 2 ARG A 262 ? ? -145.80 28.42 17 2 GLU A 268 ? ? -148.57 -23.01 18 2 LEU A 270 ? ? -68.46 2.33 19 2 PRO A 306 ? ? -56.40 170.92 20 2 THR A 309 ? ? -141.88 11.14 21 3 PRO A 212 ? ? -67.46 31.05 22 3 LYS A 213 ? ? -59.51 -5.42 23 3 ARG A 229 ? ? 49.35 21.37 24 3 ARG A 253 ? ? -143.19 11.15 25 3 LYS A 255 ? ? -147.82 -149.92 26 3 LYS A 257 ? ? -149.61 15.19 27 3 TRP A 267 ? ? -142.65 22.92 28 3 ASP A 282 ? ? -172.75 -170.51 29 4 PRO A 212 ? ? -76.76 34.74 30 4 ARG A 229 ? ? 47.82 27.38 31 4 ASP A 254 ? ? 54.45 13.74 32 4 ARG A 262 ? ? 56.98 13.44 33 4 TRP A 267 ? ? -141.99 17.68 34 4 PRO A 306 ? ? -56.03 171.79 35 4 THR A 309 ? ? -143.22 19.95 36 4 MET A 330 ? ? 46.57 29.40 37 4 SER A 332 ? ? 60.56 158.01 38 5 PRO A 212 ? ? -82.55 43.24 39 5 ARG A 229 ? ? 49.54 22.80 40 5 TRP A 267 ? ? -145.96 43.89 41 5 LEU A 270 ? ? -75.05 37.71 42 5 THR A 309 ? ? -141.32 -1.88 43 6 PRO A 212 ? ? -75.33 33.07 44 6 ARG A 229 ? ? 49.32 23.64 45 6 SER A 251 ? ? -89.68 32.21 46 6 ALA A 260 ? ? 54.56 15.00 47 6 THR A 309 ? ? -146.66 20.45 48 6 SER A 332 ? ? 62.49 139.93 49 7 ALA A 199 ? ? -127.36 -142.43 50 7 ASP A 201 ? ? 63.93 -177.10 51 7 PRO A 212 ? ? -78.22 32.21 52 7 LYS A 249 ? ? -70.05 27.41 53 7 ASP A 254 ? ? -152.38 -6.75 54 7 SER A 256 ? ? -148.89 33.39 55 7 ALA A 265 ? ? -134.50 -157.63 56 7 ASN A 266 ? ? -59.40 -3.47 57 7 HIS A 269 ? ? -96.54 30.81 58 7 LEU A 270 ? ? -74.69 25.22 59 7 ASP A 282 ? ? -170.53 -173.53 60 7 ASP A 310 ? ? -102.34 79.84 61 8 PRO A 212 ? ? -75.15 32.49 62 8 ARG A 229 ? ? 48.28 24.99 63 8 LYS A 257 ? ? -145.20 16.68 64 8 GLU A 268 ? ? -145.54 -4.21 65 8 HIS A 269 ? ? -141.37 23.17 66 8 MET A 330 ? ? 48.68 94.29 67 9 PRO A 212 ? ? -68.40 33.42 68 9 ARG A 229 ? ? 48.83 26.15 69 9 ASP A 254 ? ? 62.64 -24.52 70 9 SER A 259 ? ? 49.85 28.05 71 9 GLU A 284 ? ? -59.44 -8.54 72 10 PRO A 212 ? ? -75.65 33.33 73 10 ARG A 229 ? ? 48.28 23.71 74 10 ARG A 253 ? ? -68.08 4.60 75 10 ASP A 254 ? ? -95.59 30.88 76 10 TRP A 267 ? ? -146.54 -0.17 77 10 GLU A 271 ? ? 49.70 24.76 78 10 ASP A 282 ? ? -170.15 -171.03 79 10 ASP A 310 ? ? -105.53 79.31 80 10 PRO A 329 ? ? -78.04 42.93 81 11 PRO A 212 ? ? -78.57 38.10 82 11 ARG A 229 ? ? 49.84 22.69 83 11 SER A 256 ? ? 61.60 74.40 84 11 SER A 259 ? ? -156.76 -14.13 85 11 ALA A 265 ? ? -94.24 -155.99 86 11 ASP A 310 ? ? -116.78 79.48 87 12 PRO A 212 ? ? -74.99 31.47 88 12 LYS A 213 ? ? -59.23 -7.72 89 12 ARG A 229 ? ? 49.48 22.59 90 12 ARG A 253 ? ? 49.21 19.07 91 12 LYS A 255 ? ? 52.71 18.11 92 12 SER A 256 ? ? 60.88 -4.43 93 12 LYS A 257 ? ? -157.14 -3.88 94 12 ALA A 260 ? ? -156.04 4.27 95 12 GLU A 271 ? ? 52.65 17.35 96 12 ASP A 282 ? ? -172.99 -170.86 97 12 PRO A 306 ? ? -54.35 171.04 98 13 ALA A 199 ? ? -93.69 -156.52 99 13 PRO A 212 ? ? -68.71 31.34 100 13 ARG A 229 ? ? 49.94 24.43 101 13 SER A 256 ? ? -77.21 49.94 102 13 ALA A 260 ? ? 58.10 19.57 103 13 ALA A 265 ? ? 48.35 -148.00 104 13 GLU A 284 ? ? -59.62 -8.34 105 14 PRO A 212 ? ? -71.28 37.93 106 14 ARG A 229 ? ? 48.35 26.23 107 14 ARG A 253 ? ? -148.51 18.71 108 14 LYS A 255 ? ? -140.95 12.71 109 14 LYS A 257 ? ? -145.47 18.59 110 14 ALA A 260 ? ? 53.27 -156.64 111 14 TRP A 267 ? ? -142.29 14.61 112 14 THR A 309 ? ? -144.49 16.15 113 14 PRO A 329 ? ? -80.94 37.28 114 14 LYS A 331 ? ? 46.84 -165.52 115 14 SER A 332 ? ? 63.05 153.10 116 15 ALA A 199 ? ? -100.44 -157.94 117 15 PRO A 212 ? ? -75.14 32.80 118 15 LYS A 213 ? ? -59.34 -8.78 119 15 ARG A 253 ? ? -75.38 28.76 120 15 HIS A 261 ? ? 55.75 15.49 121 15 GLU A 284 ? ? -59.96 -9.94 122 15 MET A 330 ? ? -78.87 41.73 123 15 SER A 332 ? ? 55.97 152.10 124 16 PRO A 212 ? ? -81.56 36.98 125 16 ARG A 229 ? ? 49.27 23.04 126 16 LYS A 257 ? ? -142.84 27.78 127 16 GLU A 268 ? ? 64.11 -36.72 128 16 GLU A 271 ? ? 54.28 10.45 129 16 MET A 330 ? ? 49.38 27.75 130 16 PRO A 335 ? ? -58.32 -6.19 131 17 PRO A 212 ? ? -74.83 31.71 132 17 ARG A 229 ? ? 47.36 24.91 133 17 ARG A 253 ? ? -154.15 11.65 134 17 LYS A 255 ? ? -147.65 29.15 135 17 TRP A 267 ? ? -145.11 34.59 136 17 GLU A 268 ? ? -65.18 -167.01 137 17 HIS A 269 ? ? -69.11 16.67 138 17 ASP A 282 ? ? -172.77 -170.76 139 17 PRO A 306 ? ? -54.58 171.83 140 18 PRO A 212 ? ? -82.32 40.20 141 18 ARG A 253 ? ? 47.75 13.64 142 18 LYS A 255 ? ? 50.00 19.47 143 18 ALA A 260 ? ? 53.52 11.59 144 18 HIS A 261 ? ? -144.09 14.85 145 18 GLU A 271 ? ? 48.81 29.84 146 18 THR A 309 ? ? -143.16 21.03 147 18 ASN A 334 ? ? -147.02 47.67 148 19 PRO A 212 ? ? -74.97 32.37 149 19 ARG A 229 ? ? 48.56 26.07 150 19 GLU A 258 ? ? 46.51 164.86 151 19 ARG A 262 ? ? -95.45 -117.35 152 19 TRP A 267 ? ? -139.82 -155.96 153 19 GLU A 268 ? ? 63.72 158.68 154 19 PRO A 306 ? ? -56.11 170.52 155 19 MET A 330 ? ? 48.09 29.35 156 20 ALA A 199 ? ? -87.74 -158.88 157 20 PRO A 212 ? ? -76.18 33.30 158 20 LYS A 213 ? ? -58.43 -9.19 159 20 ASN A 220 ? ? -115.67 79.75 160 20 ARG A 229 ? ? 49.43 24.41 161 20 MET A 252 ? ? -78.26 -158.35 162 20 ARG A 253 ? ? 52.28 15.85 163 20 SER A 256 ? ? -147.77 -17.70 164 20 ALA A 260 ? ? 55.14 -176.40 165 20 PRO A 306 ? ? -56.10 170.83 166 20 PRO A 329 ? ? -75.89 20.76 167 20 MET A 330 ? ? -57.29 106.69 # _ndb_struct_conf_na.entry_id 2MJH _ndb_struct_conf_na.feature 'double helix' # _ndb_struct_na_base_pair.model_number 1 _ndb_struct_na_base_pair.i_label_asym_id B _ndb_struct_na_base_pair.i_label_comp_id U _ndb_struct_na_base_pair.i_label_seq_id 2 _ndb_struct_na_base_pair.i_symmetry 1_555 _ndb_struct_na_base_pair.j_label_asym_id B _ndb_struct_na_base_pair.j_label_comp_id C _ndb_struct_na_base_pair.j_label_seq_id 4 _ndb_struct_na_base_pair.j_symmetry 1_555 _ndb_struct_na_base_pair.shear 1.631 _ndb_struct_na_base_pair.stretch -3.397 _ndb_struct_na_base_pair.stagger -1.298 _ndb_struct_na_base_pair.buckle -7.087 _ndb_struct_na_base_pair.propeller 38.809 _ndb_struct_na_base_pair.opening -73.256 _ndb_struct_na_base_pair.pair_number 1 _ndb_struct_na_base_pair.pair_name B_U17:C19_B _ndb_struct_na_base_pair.i_auth_asym_id B _ndb_struct_na_base_pair.i_auth_seq_id 17 _ndb_struct_na_base_pair.i_PDB_ins_code ? _ndb_struct_na_base_pair.j_auth_asym_id B _ndb_struct_na_base_pair.j_auth_seq_id 19 _ndb_struct_na_base_pair.j_PDB_ins_code ? _ndb_struct_na_base_pair.hbond_type_28 ? _ndb_struct_na_base_pair.hbond_type_12 6 #