HEADER STRUCTURAL PROTEIN 22-JAN-14 2MK0 TITLE STRUCTURE OF THE PSCD4-DOMAIN OF THE CELL WALL PROTEIN PLEURALIN-1 TITLE 2 FROM THE DIATOM CYLINDROTHECA FUSIFORMIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEP200 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PSCD4-DOMAIN, UNP RESIDUES 366-469; COMPND 5 SYNONYM: PLEURALIN-1, FORMERLY HEP200; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYLINDROTHECA FUSIFORMIS; SOURCE 3 ORGANISM_COMMON: MARINE DIATOM; SOURCE 4 ORGANISM_TAXID: 2853; SOURCE 5 GENE: HEPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIATOM CELL WALL PROTEIN, PLEURALIN-1, PSCD4-DOMAIN, CELL KEYWDS 2 SURFACE/CELL WALL, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.DE SANCTIS,M.WENZLER,N.KROEGER,W.M.MALLONI,M.SUMPER,R.DEUTZMANN, AUTHOR 2 P.ZADRAVEC,E.BRUNNER,W.KREMER,S.H.R.KALBITZER REVDAT 3 14-JUN-23 2MK0 1 REMARK SEQADV REVDAT 2 14-DEC-16 2MK0 1 JRNL REVDAT 1 25-FEB-15 2MK0 0 JRNL AUTH S.DE SANCTIS,M.WENZLER,N.KROGER,W.M.MALLONI,M.SUMPER, JRNL AUTH 2 R.DEUTZMANN,P.ZADRAVEC,E.BRUNNER,W.KREMER,H.R.KALBITZER JRNL TITL PSCD DOMAINS OF PLEURALIN-1 FROM THE DIATOM CYLINDROTHECA JRNL TITL 2 FUSIFORMIS: NMR STRUCTURES AND INTERACTIONS WITH OTHER JRNL TITL 3 BIOSILICA-ASSOCIATED PROTEINS. JRNL REF STRUCTURE V. 24 1178 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27320836 JRNL DOI 10.1016/J.STR.2016.04.021 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.WENZLER,E.BRUNNER,N.KROGER,G.LEHMANN,M.SUMPER,H.R.KALBITZE REMARK 1 TITL 1H, 13C AND 15N SEQUENCE-SPECIFIC RESONANCE ASSIGNMENT OF REMARK 1 TITL 2 THE PSCD4 DOMAIN OF DIATOM CELL WALL PROTEIN PLEURALIN-1 REMARK 1 TITL 3 [ETTER]. REMARK 1 REF J.BIOMOL.NMR V. 20 191 2001 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 11495255 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.KROGER,G.LEHMANN,R.RACHEL,M.SUMPER REMARK 1 TITL CHARACTERIZATION OF A 200-KDA DIATOM PROTEIN THAT IS REMARK 1 TITL 2 SPECIFICALLY ASSOCIATED WITH A SILICA-BASED SUBSTRUCTURE OF REMARK 1 TITL 3 THE CELL WALL. REMARK 1 REF EUR.J.BIOCHEM. V. 250 99 1997 REMARK 1 REFN ISSN 0014-2956 REMARK 1 PMID 9431996 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUREMOL 2.4.1 BETA, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (AUREMOL), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE REFINED BY USING DATA REMARK 3 IMPUTATION (. CANO, C., BRUNNER, BASKARAN, K., K. ELSNER, R., REMARK 3 MUNTE, C. E. AND KALBITZER, H. R. (2009) PROTEIN STRUCTURE REMARK 3 CALCULATION WITH DATA IMPUTATION: THE USE OF SUBSTITUTE REMARK 3 RESTRAINTS. J. BIOMOL. NMR 45, 397-411) AND REFINEMENT IN REMARK 3 EXPLICUT WATER (LINGE, J.P., WILLIAMS, M.A., SPRONK, C.A.E.M., REMARK 3 BONVIN, A.M.J.J. AND NILGES, M. (2003). REFINEMENT OF PROTEIN REMARK 3 STRUCTURES IN EXPLICIT SOLVENT. PROTEINS 50, 496-506). REMARK 4 REMARK 4 2MK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000103705. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-97% 15N] PLEURALIN-1, REMARK 210 FORMERLY HEP200-1, 95% H2O/5% REMARK 210 D2O; 0.8 MM [U-97% 13C; U-98% REMARK 210 15N] PLEURALIN-1, FORMERLY REMARK 210 HEP200-2, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; CBCA(CO)NH; 1H-15N-HSQC; REMARK 210 1H-15N-NOESY HSQC; 1H-15N-TOCSY REMARK 210 HSQC; HNCO; HACACO; HCCH-TOCSY; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D HBHA(CO)NH; 2D 1H-13C HSQC; REMARK 210 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUREMOL 2.4.1 BETA, CNS 1.21, REMARK 210 TOPSPIN 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE HAS BEEN DETERMINED COMBINING EXPERIMENTAL REMARK 210 RESTRAINTS (J-COUPLINGS, NOE DISTANCES, HYDROGEN BONDS AND RDCS) REMARK 210 WITH DIHEDRAL ANGLES OBTAINED WITH TALOS AND WITH ADDITIONAL REMARK 210 SUBSTITUTE RESTRAINTS (NOES, HYDROGEN BONDS AND DIHEDRAL ANGLES) REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 SER A 357 REMARK 465 TYR A 358 REMARK 465 TYR A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 THR A 366 REMARK 465 MET A 367 REMARK 465 MET A 368 REMARK 465 PRO A 369 REMARK 465 SER A 370 REMARK 465 PRO A 371 REMARK 465 PRO A 460 REMARK 465 SER A 461 REMARK 465 ALA A 462 REMARK 465 VAL A 463 REMARK 465 THR A 464 REMARK 465 VAL A 465 REMARK 465 PRO A 466 REMARK 465 LEU A 467 REMARK 465 THR A 468 REMARK 465 PRO A 469 REMARK 465 THR A 470 REMARK 465 MET A 471 REMARK 465 LEU A 472 REMARK 465 PRO A 473 REMARK 465 SER A 474 REMARK 465 PRO A 475 REMARK 465 SER A 476 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 376 -63.87 -122.49 REMARK 500 1 PRO A 377 79.99 -66.07 REMARK 500 1 ASP A 379 -72.95 -75.26 REMARK 500 1 CYS A 380 -67.83 179.44 REMARK 500 1 VAL A 383 75.15 -118.76 REMARK 500 1 PRO A 388 -105.17 -53.78 REMARK 500 1 ILE A 389 -178.44 59.02 REMARK 500 1 PHE A 393 89.96 155.80 REMARK 500 1 LEU A 394 162.09 73.46 REMARK 500 1 PRO A 395 47.77 -61.31 REMARK 500 1 LYS A 396 -65.52 32.45 REMARK 500 1 ASP A 398 -78.97 -49.94 REMARK 500 1 SER A 399 45.19 -159.54 REMARK 500 1 ALA A 400 79.47 80.39 REMARK 500 1 PRO A 402 146.86 -37.34 REMARK 500 1 ASP A 404 37.09 -90.41 REMARK 500 1 CYS A 405 -83.45 65.00 REMARK 500 1 ARG A 410 78.61 -101.41 REMARK 500 1 ASN A 420 27.67 47.31 REMARK 500 1 ASN A 421 12.73 -141.66 REMARK 500 1 ILE A 422 -53.73 -147.05 REMARK 500 1 CYS A 424 118.33 -26.63 REMARK 500 1 SER A 426 42.23 104.34 REMARK 500 1 CYS A 427 -168.10 -107.04 REMARK 500 1 PRO A 429 -129.85 -74.50 REMARK 500 1 GLU A 431 -94.85 68.28 REMARK 500 1 CYS A 432 -62.40 68.46 REMARK 500 1 ASP A 435 91.30 63.10 REMARK 500 1 THR A 440 103.07 58.39 REMARK 500 1 PRO A 441 -151.46 -86.64 REMARK 500 1 SER A 442 138.77 83.43 REMARK 500 1 PRO A 447 109.56 -56.77 REMARK 500 1 ASN A 449 179.02 60.50 REMARK 500 1 SER A 451 -58.97 105.13 REMARK 500 1 THR A 453 -26.16 163.36 REMARK 500 1 SER A 457 66.33 -158.72 REMARK 500 2 GLN A 376 -62.08 -148.87 REMARK 500 2 PRO A 377 78.90 -56.79 REMARK 500 2 ASP A 379 -77.79 -68.10 REMARK 500 2 CYS A 380 -56.57 175.55 REMARK 500 2 VAL A 383 62.69 -102.23 REMARK 500 2 PRO A 388 -102.74 -45.67 REMARK 500 2 ILE A 389 179.42 61.43 REMARK 500 2 PHE A 393 86.49 146.09 REMARK 500 2 LEU A 394 152.99 75.86 REMARK 500 2 PRO A 395 55.45 -60.70 REMARK 500 2 LYS A 396 -68.56 34.75 REMARK 500 2 ASP A 398 -77.10 -47.11 REMARK 500 2 SER A 399 37.07 -157.65 REMARK 500 2 ALA A 400 77.78 81.65 REMARK 500 REMARK 500 THIS ENTRY HAS 347 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4958 RELATED DB: BMRB REMARK 900 SHIFTS DBREF 2MK0 A 366 469 UNP O22015 O22015_CYLFU 366 469 SEQADV 2MK0 SER A 357 UNP O22015 EXPRESSION TAG SEQADV 2MK0 TYR A 358 UNP O22015 EXPRESSION TAG SEQADV 2MK0 TYR A 359 UNP O22015 EXPRESSION TAG SEQADV 2MK0 HIS A 360 UNP O22015 EXPRESSION TAG SEQADV 2MK0 HIS A 361 UNP O22015 EXPRESSION TAG SEQADV 2MK0 HIS A 362 UNP O22015 EXPRESSION TAG SEQADV 2MK0 HIS A 363 UNP O22015 EXPRESSION TAG SEQADV 2MK0 HIS A 364 UNP O22015 EXPRESSION TAG SEQADV 2MK0 HIS A 365 UNP O22015 EXPRESSION TAG SEQADV 2MK0 THR A 470 UNP O22015 EXPRESSION TAG SEQADV 2MK0 MET A 471 UNP O22015 EXPRESSION TAG SEQADV 2MK0 LEU A 472 UNP O22015 EXPRESSION TAG SEQADV 2MK0 PRO A 473 UNP O22015 EXPRESSION TAG SEQADV 2MK0 SER A 474 UNP O22015 EXPRESSION TAG SEQADV 2MK0 PRO A 475 UNP O22015 EXPRESSION TAG SEQADV 2MK0 SER A 476 UNP O22015 EXPRESSION TAG SEQRES 1 A 120 SER TYR TYR HIS HIS HIS HIS HIS HIS THR MET MET PRO SEQRES 2 A 120 SER PRO GLU PRO SER SER GLN PRO SER ASP CYS GLY GLU SEQRES 3 A 120 VAL ILE GLU GLU CYS PRO ILE ASP ALA CYS PHE LEU PRO SEQRES 4 A 120 LYS SER ASP SER ALA ARG PRO PRO ASP CYS THR ALA VAL SEQRES 5 A 120 GLY ARG PRO ASP CYS ASN VAL LEU PRO PHE PRO ASN ASN SEQRES 6 A 120 ILE GLY CYS PRO SER CYS CYS PRO PHE GLU CYS SER PRO SEQRES 7 A 120 ASP ASN PRO MET PHE THR PRO SER PRO ASP GLY SER PRO SEQRES 8 A 120 PRO ASN CYS SER PRO THR MET LEU PRO SER PRO SER PRO SEQRES 9 A 120 SER ALA VAL THR VAL PRO LEU THR PRO THR MET LEU PRO SEQRES 10 A 120 SER PRO SER HELIX 1 1 PRO A 388 LEU A 394 1 7 HELIX 2 2 ASP A 404 VAL A 408 5 5 HELIX 3 3 ARG A 410 VAL A 415 5 6 SSBOND 1 CYS A 380 CYS A 450 1555 1555 2.02 SSBOND 2 CYS A 387 CYS A 432 1555 1555 2.01 SSBOND 3 CYS A 392 CYS A 428 1555 1555 2.03 SSBOND 4 CYS A 405 CYS A 427 1555 1555 2.01 SSBOND 5 CYS A 413 CYS A 424 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1