data_2MKE # _entry.id 2MKE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2MKE RCSB RCSB103719 BMRB 19771 WWPDB D_1000103719 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19771 BMRB unspecified . 2MKH PDB unspecified . 2MKI PDB unspecified . 2MKJ PDB unspecified . 2MKK PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MKE _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2014-02-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Afroz, T.' 1 'Skrisovska, L.' 2 'Belloc, E.' 3 'Boixet, J.G.' 4 'Mendez, R.' 5 'Allain, F.H.-T.' 6 # _citation.id primary _citation.title 'A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 28 _citation.page_first 1498 _citation.page_last 1514 _citation.year 2014 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24990967 _citation.pdbx_database_id_DOI 10.1101/gad.241133.114 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Afroz, T.' 1 primary 'Skrisovska, L.' 2 primary 'Belloc, E.' 3 primary 'Guillen-Boixet, J.' 4 primary 'Mendez, R.' 5 primary 'Allain, F.H.-T.' 6 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytoplasmic polyadenylation element-binding protein 1' 7387.414 1 ? ? 'UNP residues 426-486' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CPE-BP1, CPE-binding protein 1, h-CEBP, hCPEB-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code IDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS _entity_poly.pdbx_seq_one_letter_code_can IDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ASP n 1 3 PRO n 1 4 TYR n 1 5 LEU n 1 6 GLU n 1 7 ASP n 1 8 SER n 1 9 LEU n 1 10 CYS n 1 11 HIS n 1 12 ILE n 1 13 CYS n 1 14 SER n 1 15 SER n 1 16 GLN n 1 17 PRO n 1 18 GLY n 1 19 PRO n 1 20 PHE n 1 21 PHE n 1 22 CYS n 1 23 ARG n 1 24 ASP n 1 25 GLN n 1 26 VAL n 1 27 CYS n 1 28 PHE n 1 29 LYS n 1 30 TYR n 1 31 PHE n 1 32 CYS n 1 33 ARG n 1 34 SER n 1 35 CYS n 1 36 TRP n 1 37 HIS n 1 38 TRP n 1 39 ARG n 1 40 HIS n 1 41 SER n 1 42 MET n 1 43 GLU n 1 44 GLY n 1 45 LEU n 1 46 ARG n 1 47 HIS n 1 48 HIS n 1 49 SER n 1 50 PRO n 1 51 LEU n 1 52 MET n 1 53 ARG n 1 54 ASN n 1 55 GLN n 1 56 LYS n 1 57 ASN n 1 58 ARG n 1 59 ASP n 1 60 SER n 1 61 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CPEB1, CPEB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector 'pET28A(+)' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CPEB1_HUMAN _struct_ref.pdbx_db_accession Q9BZB8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS _struct_ref.pdbx_align_begin 426 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2MKE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 61 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BZB8 _struct_ref_seq.db_align_beg 426 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 486 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 426 _struct_ref_seq.pdbx_auth_seq_align_end 486 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-13C HSQC aliphatic' 1 4 1 '2D 1H-13C HSQC aromatic' 1 5 1 '2D 1H-1H TOCSY' 1 6 1 '3D CBCA(CO)NH' 1 7 1 '3D HNCO' 1 8 1 '3D HNCA' 1 9 1 '3D HNCACB' 1 10 1 '3D HCCH-TOCSY' 1 11 1 '3D 1H-15N NOESY' 1 12 1 '3D 1H-13C NOESY aliphatic' 1 13 1 '3D 1H-13C NOESY aromatic' 1 14 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.15 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1ZZ-1, 0.4-0.6 mM [U-100% 15N] CPEB1ZZ-2, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker Avance 1 'Bruker Avance' 700 Bruker Avance 2 'Bruker Avance' 600 Bruker Avance 3 'Bruker Avance' 500 Bruker Avance 4 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MKE _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 26 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MKE _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 2 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MKE _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_software.authors 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name AMBER _pdbx_nmr_software.ordinal 1 _pdbx_nmr_software.version ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MKE _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MKE _struct.title 'Solution structure of CPEB1 ZZ domain in the free state' _struct.pdbx_descriptor 'Cytoplasmic polyadenylation element-binding protein 1' _struct.pdbx_model_details 'closest to the average, model2' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MKE _struct_keywords.pdbx_keywords 'TRANSLATION REGULATOR' _struct_keywords.text 'CPEB1, CPEB4, RRM, Cytoplasmic Polyadenylation Element, Translation regulation, TRANSLATION REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 32 ? HIS A 40 ? CYS A 457 HIS A 465 1 ? 9 HELX_P HELX_P2 2 MET A 42 ? ARG A 46 ? MET A 467 ARG A 471 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 22 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 447 A ZN 502 1_555 ? ? ? ? ? ? ? 1.957 ? metalc2 metalc ? ? A HIS 40 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 465 A ZN 502 1_555 ? ? ? ? ? ? ? 1.972 ? metalc3 metalc ? ? A CYS 27 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 452 A ZN 502 1_555 ? ? ? ? ? ? ? 1.961 ? metalc4 metalc ? ? A HIS 48 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 473 A ZN 502 1_555 ? ? ? ? ? ? ? 1.990 ? metalc5 metalc ? ? A CYS 13 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 438 A ZN 501 1_555 ? ? ? ? ? ? ? 2.007 ? metalc6 metalc ? ? A CYS 35 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 460 A ZN 501 1_555 ? ? ? ? ? ? ? 2.000 ? metalc7 metalc ? ? A CYS 32 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 457 A ZN 501 1_555 ? ? ? ? ? ? ? 1.978 ? metalc8 metalc ? ? A CYS 10 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 435 A ZN 501 1_555 ? ? ? ? ? ? ? 1.997 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 30 ? PHE A 31 ? TYR A 455 PHE A 456 A 2 PHE A 20 ? CYS A 22 ? PHE A 445 CYS A 447 A 3 PRO A 50 ? LEU A 51 ? PRO A 475 LEU A 476 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 31 ? O PHE A 456 N PHE A 20 ? N PHE A 445 A 2 3 N PHE A 21 ? N PHE A 446 O LEU A 51 ? O LEU A 476 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 501' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 10 ? CYS A 435 . ? 1_555 ? 2 AC1 4 CYS A 13 ? CYS A 438 . ? 1_555 ? 3 AC1 4 CYS A 32 ? CYS A 457 . ? 1_555 ? 4 AC1 4 CYS A 35 ? CYS A 460 . ? 1_555 ? 5 AC2 4 CYS A 22 ? CYS A 447 . ? 1_555 ? 6 AC2 4 CYS A 27 ? CYS A 452 . ? 1_555 ? 7 AC2 4 HIS A 40 ? HIS A 465 . ? 1_555 ? 8 AC2 4 HIS A 48 ? HIS A 473 . ? 1_555 ? # _atom_sites.entry_id 2MKE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 426 426 ILE ILE A . n A 1 2 ASP 2 427 427 ASP ASP A . n A 1 3 PRO 3 428 428 PRO PRO A . n A 1 4 TYR 4 429 429 TYR TYR A . n A 1 5 LEU 5 430 430 LEU LEU A . n A 1 6 GLU 6 431 431 GLU GLU A . n A 1 7 ASP 7 432 432 ASP ASP A . n A 1 8 SER 8 433 433 SER SER A . n A 1 9 LEU 9 434 434 LEU LEU A . n A 1 10 CYS 10 435 435 CYS CYS A . n A 1 11 HIS 11 436 436 HIS HIS A . n A 1 12 ILE 12 437 437 ILE ILE A . n A 1 13 CYS 13 438 438 CYS CYS A . n A 1 14 SER 14 439 439 SER SER A . n A 1 15 SER 15 440 440 SER SER A . n A 1 16 GLN 16 441 441 GLN GLN A . n A 1 17 PRO 17 442 442 PRO PRO A . n A 1 18 GLY 18 443 443 GLY GLY A . n A 1 19 PRO 19 444 444 PRO PRO A . n A 1 20 PHE 20 445 445 PHE PHE A . n A 1 21 PHE 21 446 446 PHE PHE A . n A 1 22 CYS 22 447 447 CYS CYS A . n A 1 23 ARG 23 448 448 ARG ARG A . n A 1 24 ASP 24 449 449 ASP ASP A . n A 1 25 GLN 25 450 450 GLN GLN A . n A 1 26 VAL 26 451 451 VAL VAL A . n A 1 27 CYS 27 452 452 CYS CYS A . n A 1 28 PHE 28 453 453 PHE PHE A . n A 1 29 LYS 29 454 454 LYS LYS A . n A 1 30 TYR 30 455 455 TYR TYR A . n A 1 31 PHE 31 456 456 PHE PHE A . n A 1 32 CYS 32 457 457 CYS CYS A . n A 1 33 ARG 33 458 458 ARG ARG A . n A 1 34 SER 34 459 459 SER SER A . n A 1 35 CYS 35 460 460 CYS CYS A . n A 1 36 TRP 36 461 461 TRP TRP A . n A 1 37 HIS 37 462 462 HIS HIS A . n A 1 38 TRP 38 463 463 TRP TRP A . n A 1 39 ARG 39 464 464 ARG ARG A . n A 1 40 HIS 40 465 465 HIS HIS A . n A 1 41 SER 41 466 466 SER SER A . n A 1 42 MET 42 467 467 MET MET A . n A 1 43 GLU 43 468 468 GLU GLU A . n A 1 44 GLY 44 469 469 GLY GLY A . n A 1 45 LEU 45 470 470 LEU LEU A . n A 1 46 ARG 46 471 471 ARG ARG A . n A 1 47 HIS 47 472 472 HIS HIS A . n A 1 48 HIS 48 473 473 HIS HIS A . n A 1 49 SER 49 474 474 SER SER A . n A 1 50 PRO 50 475 475 PRO PRO A . n A 1 51 LEU 51 476 476 LEU LEU A . n A 1 52 MET 52 477 477 MET MET A . n A 1 53 ARG 53 478 478 ARG ARG A . n A 1 54 ASN 54 479 479 ASN ASN A . n A 1 55 GLN 55 480 480 GLN GLN A . n A 1 56 LYS 56 481 481 LYS LYS A . n A 1 57 ASN 57 482 482 ASN ASN A . n A 1 58 ARG 58 483 483 ARG ARG A . n A 1 59 ASP 59 484 484 ASP ASP A . n A 1 60 SER 60 485 485 SER SER A . n A 1 61 SER 61 486 486 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 501 1 ZN ZN A . C 2 ZN 1 502 2 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 22 ? A CYS 447 ? 1_555 ZN ? C ZN . ? A ZN 502 ? 1_555 NE2 ? A HIS 40 ? A HIS 465 ? 1_555 117.1 ? 2 SG ? A CYS 22 ? A CYS 447 ? 1_555 ZN ? C ZN . ? A ZN 502 ? 1_555 SG ? A CYS 27 ? A CYS 452 ? 1_555 114.6 ? 3 NE2 ? A HIS 40 ? A HIS 465 ? 1_555 ZN ? C ZN . ? A ZN 502 ? 1_555 SG ? A CYS 27 ? A CYS 452 ? 1_555 110.1 ? 4 SG ? A CYS 22 ? A CYS 447 ? 1_555 ZN ? C ZN . ? A ZN 502 ? 1_555 ND1 ? A HIS 48 ? A HIS 473 ? 1_555 111.1 ? 5 NE2 ? A HIS 40 ? A HIS 465 ? 1_555 ZN ? C ZN . ? A ZN 502 ? 1_555 ND1 ? A HIS 48 ? A HIS 473 ? 1_555 91.6 ? 6 SG ? A CYS 27 ? A CYS 452 ? 1_555 ZN ? C ZN . ? A ZN 502 ? 1_555 ND1 ? A HIS 48 ? A HIS 473 ? 1_555 110.0 ? 7 SG ? A CYS 13 ? A CYS 438 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 35 ? A CYS 460 ? 1_555 111.7 ? 8 SG ? A CYS 13 ? A CYS 438 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 32 ? A CYS 457 ? 1_555 109.2 ? 9 SG ? A CYS 35 ? A CYS 460 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 32 ? A CYS 457 ? 1_555 103.2 ? 10 SG ? A CYS 13 ? A CYS 438 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 10 ? A CYS 435 ? 1_555 111.5 ? 11 SG ? A CYS 35 ? A CYS 460 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 10 ? A CYS 435 ? 1_555 110.2 ? 12 SG ? A CYS 32 ? A CYS 457 ? 1_555 ZN ? B ZN . ? A ZN 501 ? 1_555 SG ? A CYS 10 ? A CYS 435 ? 1_555 110.7 ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-07-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_entry_details.entry_id 2MKE _pdbx_entry_details.sequence_details 'THE RESIDUE NUMBERS ARE BASED ON ISOFORM 4 OF CPEB1_HUMAN.' _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id CPEB1ZZ-1 ? 0.4-0.6 mM '[U-100% 13C; U-100% 15N]' 1 CPEB1ZZ-2 ? 0.4-0.6 mM '[U-100% 15N]' 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 439 ? ? 39.89 33.80 2 2 SER A 439 ? ? 39.65 35.43 3 2 PRO A 442 ? ? -63.82 5.39 4 2 PHE A 453 ? ? -157.14 27.82 5 2 ARG A 478 ? ? 55.72 12.78 6 3 SER A 439 ? ? 39.95 41.89 7 3 PHE A 453 ? ? -150.98 18.22 8 4 PRO A 442 ? ? -69.85 18.93 9 4 PHE A 453 ? ? -150.79 20.71 10 4 ARG A 483 ? ? -145.70 11.08 11 5 SER A 433 ? ? -144.42 23.28 12 5 SER A 439 ? ? 40.49 26.95 13 5 CYS A 452 ? ? -148.89 43.04 14 5 PHE A 453 ? ? -73.84 43.02 15 6 SER A 439 ? ? 45.87 21.56 16 6 ARG A 448 ? ? -111.77 75.43 17 6 PHE A 453 ? ? -147.93 23.86 18 7 SER A 439 ? ? 42.57 28.15 19 7 CYS A 452 ? ? -150.66 40.89 20 8 TYR A 429 ? ? 56.39 17.32 21 8 SER A 439 ? ? 46.22 26.27 22 8 PRO A 442 ? ? -57.56 5.53 23 8 PHE A 453 ? ? 46.28 27.27 24 9 CYS A 438 ? ? -144.73 -17.39 25 9 PRO A 442 ? ? -67.71 28.93 26 9 PHE A 453 ? ? -156.45 28.79 27 10 CYS A 438 ? ? -142.24 -17.60 28 10 PRO A 442 ? ? -56.96 8.78 29 10 CYS A 452 ? ? -146.76 40.17 30 10 PHE A 453 ? ? -75.15 47.64 31 11 PRO A 428 ? ? -59.42 -8.35 32 11 SER A 439 ? ? 41.61 27.41 33 11 PRO A 442 ? ? -56.11 -9.45 34 11 CYS A 452 ? ? -120.72 -69.94 35 11 ARG A 471 ? ? -68.96 0.60 36 12 PRO A 442 ? ? -69.42 24.00 37 12 CYS A 452 ? ? -149.04 35.94 38 12 PHE A 453 ? ? -68.84 22.62 39 12 SER A 485 ? ? -141.53 11.26 40 13 CYS A 452 ? ? -146.93 36.31 41 13 PHE A 453 ? ? -73.72 34.61 42 14 ASP A 432 ? ? -77.24 32.93 43 14 SER A 439 ? ? 35.96 48.14 44 14 PHE A 453 ? ? 47.93 25.71 45 14 ARG A 478 ? ? 55.58 16.53 46 15 PRO A 442 ? ? -62.45 6.94 47 15 CYS A 452 ? ? -146.19 32.28 48 15 PHE A 453 ? ? -75.37 38.14 49 15 ARG A 478 ? ? 54.07 19.99 50 16 PRO A 442 ? ? -71.55 29.82 51 16 CYS A 452 ? ? -145.92 36.69 52 16 PHE A 453 ? ? -74.26 41.58 53 16 ARG A 478 ? ? 56.22 15.08 54 16 ARG A 483 ? ? -140.34 -6.00 55 17 SER A 439 ? ? 45.47 25.73 56 17 CYS A 452 ? ? -91.46 -97.94 57 17 SER A 485 ? ? 57.37 -175.84 58 18 SER A 439 ? ? 38.03 38.26 59 18 PRO A 442 ? ? -58.62 108.01 60 18 CYS A 452 ? ? -148.55 43.89 61 18 PHE A 453 ? ? -73.14 41.30 62 19 SER A 439 ? ? 37.05 42.61 63 19 CYS A 452 ? ? -110.90 -73.46 64 19 PHE A 453 ? ? 48.61 23.05 65 20 CYS A 438 ? ? -141.22 -16.16 66 20 SER A 439 ? ? 45.20 26.31 67 20 PRO A 442 ? ? -60.72 8.93 68 20 PHE A 453 ? ? 47.16 20.56 69 20 MET A 477 ? ? 61.37 149.52 70 20 GLN A 480 ? ? 57.41 179.51 71 21 TYR A 429 ? ? -142.05 10.97 72 21 PRO A 442 ? ? -68.86 21.53 73 21 CYS A 452 ? ? -92.92 -83.47 74 22 SER A 439 ? ? 43.25 27.87 75 22 PRO A 442 ? ? -59.68 -2.85 76 22 PHE A 453 ? ? -149.61 32.38 77 23 CYS A 438 ? ? -141.42 -14.53 78 23 SER A 439 ? ? 44.97 28.11 79 23 PRO A 442 ? ? -61.51 15.56 80 23 PHE A 453 ? ? -151.01 35.10 81 24 SER A 439 ? ? 35.27 51.59 82 24 PHE A 453 ? ? -157.95 24.54 83 24 GLN A 480 ? ? 50.27 15.94 84 25 TYR A 429 ? ? 56.72 19.96 85 25 CYS A 438 ? ? -145.30 -20.47 86 25 SER A 439 ? ? 46.25 25.95 87 25 PRO A 442 ? ? -59.35 1.50 88 25 CYS A 452 ? ? -153.44 42.51 89 25 PHE A 453 ? ? -71.48 31.00 90 25 GLU A 468 ? ? 61.66 -8.49 91 25 ASN A 479 ? ? -140.47 13.07 92 26 CYS A 438 ? ? -144.18 -18.08 93 26 SER A 439 ? ? 43.97 27.18 94 26 PRO A 442 ? ? -60.87 3.55 95 26 PHE A 453 ? ? -158.26 25.42 96 26 LEU A 470 ? ? -142.16 15.55 97 26 MET A 477 ? ? -153.60 -23.94 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #