data_2MKK # _entry.id 2MKK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2MKK RCSB RCSB103725 BMRB 19778 WWPDB D_1000103725 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19778 BMRB unspecified . 2MKE PDB unspecified . 2MKH PDB unspecified . 2MKI PDB unspecified . 2MKJ PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MKK _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2014-02-07 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Afroz, T.' 1 'Skrisovska, L.' 2 'Belloc, E.' 3 'Boixet, J.G.' 4 'Mendez, R.' 5 'Allain, F.H.-T.' 6 # _citation.id primary _citation.title 'A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins' _citation.journal_abbrev 'Genes Dev.' _citation.journal_volume 28 _citation.page_first 1498 _citation.page_last 1514 _citation.year 2014 _citation.journal_id_ASTM GEDEEP _citation.country US _citation.journal_id_ISSN 0890-9369 _citation.journal_id_CSD 2056 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24990967 _citation.pdbx_database_id_DOI 10.1101/gad.241133.114 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Afroz, T.' 1 primary 'Skrisovska, L.' 2 primary 'Belloc, E.' 3 primary 'Guillen-Boixet, J.' 4 primary 'Mendez, R.' 5 primary 'Allain, F.H.-T.' 6 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytoplasmic polyadenylation element-binding protein 1' 23930.580 1 ? ? 'UNP residues 219-430' ? 2 polymer syn ;RNA (5'-R(*UP*UP*UP*UP*A)-3') ; 1508.912 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CPE-BP1, CPE-binding protein 1, h-CEBP, hCPEB-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQ ACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGV VYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYL ; ;MTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQ ACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGV VYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYL ; A ? 2 polyribonucleotide no no UUUUA UUUUA B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 TRP n 1 4 SER n 1 5 GLY n 1 6 GLN n 1 7 LEU n 1 8 PRO n 1 9 PRO n 1 10 ARG n 1 11 ASN n 1 12 TYR n 1 13 LYS n 1 14 ASN n 1 15 PRO n 1 16 ILE n 1 17 TYR n 1 18 SER n 1 19 CYS n 1 20 LYS n 1 21 VAL n 1 22 PHE n 1 23 LEU n 1 24 GLY n 1 25 GLY n 1 26 VAL n 1 27 PRO n 1 28 TRP n 1 29 ASP n 1 30 ILE n 1 31 THR n 1 32 GLU n 1 33 ALA n 1 34 GLY n 1 35 LEU n 1 36 VAL n 1 37 ASN n 1 38 THR n 1 39 PHE n 1 40 ARG n 1 41 VAL n 1 42 PHE n 1 43 GLY n 1 44 SER n 1 45 LEU n 1 46 SER n 1 47 VAL n 1 48 GLU n 1 49 TRP n 1 50 PRO n 1 51 GLY n 1 52 LYS n 1 53 ASP n 1 54 GLY n 1 55 LYS n 1 56 HIS n 1 57 PRO n 1 58 ARG n 1 59 CYS n 1 60 PRO n 1 61 PRO n 1 62 LYS n 1 63 GLY n 1 64 TYR n 1 65 VAL n 1 66 TYR n 1 67 LEU n 1 68 VAL n 1 69 PHE n 1 70 GLU n 1 71 LEU n 1 72 GLU n 1 73 LYS n 1 74 SER n 1 75 VAL n 1 76 ARG n 1 77 SER n 1 78 LEU n 1 79 LEU n 1 80 GLN n 1 81 ALA n 1 82 CYS n 1 83 SER n 1 84 HIS n 1 85 ASP n 1 86 PRO n 1 87 LEU n 1 88 SER n 1 89 PRO n 1 90 ASP n 1 91 GLY n 1 92 LEU n 1 93 SER n 1 94 GLU n 1 95 TYR n 1 96 TYR n 1 97 PHE n 1 98 LYS n 1 99 MET n 1 100 SER n 1 101 SER n 1 102 ARG n 1 103 ARG n 1 104 MET n 1 105 ARG n 1 106 CYS n 1 107 LYS n 1 108 GLU n 1 109 VAL n 1 110 GLN n 1 111 VAL n 1 112 ILE n 1 113 PRO n 1 114 TRP n 1 115 VAL n 1 116 LEU n 1 117 ALA n 1 118 ASP n 1 119 SER n 1 120 ASN n 1 121 PHE n 1 122 VAL n 1 123 ARG n 1 124 SER n 1 125 PRO n 1 126 SER n 1 127 GLN n 1 128 ARG n 1 129 LEU n 1 130 ASP n 1 131 PRO n 1 132 SER n 1 133 ARG n 1 134 THR n 1 135 VAL n 1 136 PHE n 1 137 VAL n 1 138 GLY n 1 139 ALA n 1 140 LEU n 1 141 HIS n 1 142 GLY n 1 143 MET n 1 144 LEU n 1 145 ASN n 1 146 ALA n 1 147 GLU n 1 148 ALA n 1 149 LEU n 1 150 ALA n 1 151 ALA n 1 152 ILE n 1 153 LEU n 1 154 ASN n 1 155 ASP n 1 156 LEU n 1 157 PHE n 1 158 GLY n 1 159 GLY n 1 160 VAL n 1 161 VAL n 1 162 TYR n 1 163 ALA n 1 164 GLY n 1 165 ILE n 1 166 ASP n 1 167 THR n 1 168 ASP n 1 169 LYS n 1 170 HIS n 1 171 LYS n 1 172 TYR n 1 173 PRO n 1 174 ILE n 1 175 GLY n 1 176 SER n 1 177 GLY n 1 178 ARG n 1 179 VAL n 1 180 THR n 1 181 PHE n 1 182 ASN n 1 183 ASN n 1 184 GLN n 1 185 ARG n 1 186 SER n 1 187 TYR n 1 188 LEU n 1 189 LYS n 1 190 ALA n 1 191 VAL n 1 192 SER n 1 193 ALA n 1 194 ALA n 1 195 PHE n 1 196 VAL n 1 197 GLU n 1 198 ILE n 1 199 LYS n 1 200 THR n 1 201 THR n 1 202 LYS n 1 203 PHE n 1 204 THR n 1 205 LYS n 1 206 LYS n 1 207 VAL n 1 208 GLN n 1 209 ILE n 1 210 ASP n 1 211 PRO n 1 212 TYR n 1 213 LEU n 2 1 U n 2 2 U n 2 3 U n 2 4 U n 2 5 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CPEB1, CPEB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector 'pET28A(+)' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CPEB1_HUMAN Q9BZB8 1 ;TWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVRSLLQA CSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVV YAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYL ; 219 ? 2 PDB 2MKK 2MKK 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MKK A 2 ? 213 ? Q9BZB8 219 ? 430 ? 219 430 2 2 2MKK B 1 ? 5 ? 2MKK 1 ? 5 ? 1 5 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2MKK _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9BZB8 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 218 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 4 '2D 1H-15N HSQC' 1 2 4 '2D TROSY' 1 3 2 '2D 1H-13C HSQC' 1 4 2 '2D 1H-13C HSQC aliphatic' 1 5 2 '2D 1H-13C HSQC aromatic' 1 6 5 '2D 1H-1H TOCSY' 1 7 5 '2D 1H-1H NOESY' 1 8 1 '3D trHNCA' 1 9 1 '3D trHN(CO)CA' 1 10 1 '3D trCBCA(CO)NH' 1 11 1 '3D trHNCACB' 1 12 1 '3D trHNCACO' 1 13 1 '3D trHNCO' 1 14 2 '3D HCCH-TOCSY' 1 15 2 '3D HCCH-TOCSY' 1 16 4 '3D 1H-15N NOESY' 1 17 1 '3D 1H-13C NOESY aliphatic' 1 18 1 '3D 1H-13C NOESY aromatic' 1 19 6 '2D 13C-F1-filtered F2-filtered NOESY' 1 20 6 '2D 1H-1H F1-13C-filtered F2-13C-edited NOESY' 1 21 6 '3D 13C-F1-edited F3-filtered NOESY HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.15 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 313 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.4-0.6 mM [U-100% 13C; U-100% 15N; U-80% 2H] CPEB1RRM12-1, 0.4-0.6 mM 5'-UUUUA-3'-2, 100 mM sodium chloride-3, 50 mM sodium phosphate-4, 1 mM DTT-5, 1 mM magnesium sulfate-6, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1RRM12-7, 0.4-0.6 mM 5'-UUUUA-3'-8, 100 mM sodium chloride-9, 50 mM sodium phosphate-10, 1 mM DTT-11, 1 mM magnesium sulfate-12, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1RRM12-13, 0.4-0.6 mM 5'-UUUUA-3'-14, 100 mM sodium chloride-15, 50 mM sodium phosphate-16, 1 mM DTT-17, 1 mM magnesium sulfate-18, 100% D2O ; 3 '100% D2O' ;0.4-0.6 mM [U-100% 15N] CPEB1RRM12-19, 0.4-0.6 mM 5'-UUUUA-3'-20, 100 mM sodium chloride-21, 50 mM sodium phosphate-22, 1 mM DTT-23, 1 mM magnesium sulfate-24, 90% H2O/10% D2O ; 4 '90% H2O/10% D2O' ;0.4-0.6 mM [U-100% 15N] CPEB1RRM12-25, 0.4-0.6 mM 5'-UUUUA-3'-26, 100 mM sodium chloride-27, 50 mM sodium phosphate-28, 1 mM DTT-29, 1 mM magnesium sulfate-30, 100% D2O ; 5 '100% D2O' ;0.4-0.6 mM [U-100% 15N] CPEB1RRM12-31, 0.4-0.6 mM 5'-CUUUA-3'-32, 100 mM sodium chloride-33, 50 mM sodium phosphate-34, 1 mM DTT-35, 1 mM magnesium sulfate-36, 100% D2O ; 6 '100% D2O' ;0.4-0.6 mM [U-100% 13C; U-100% 15N] CPEB1RRM12-37, 0.4-0.6 mM 5'-CUUUA-3'-38, 100 mM sodium chloride-39, 50 mM sodium phosphate-40, 1 mM DTT-41, 1 mM magnesium sulfate-42, 100% D2O ; 7 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker Avance 1 'Bruker Avance' 700 Bruker Avance 2 'Bruker Avance' 600 Bruker Avance 3 'Bruker Avance' 500 Bruker Avance 4 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MKK _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MKK _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 2 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MKK _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman' refinement AMBER 1 ? 'Bruker Biospin' processing TOPSPIN 2 ? 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3 ? Goddard 'chemical shift assignment' SPARKY 4 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MKK _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MKK _struct.title 'Structural model of tandem RRM domains of cytoplasmic polyadenylation element binding protein 1 (CPEB1) in complex with RNA' _struct.pdbx_descriptor 'Cytoplasmic polyadenylation element-binding protein 1/RNA' _struct.pdbx_model_details 'closest to the average, model2' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MKK _struct_keywords.pdbx_keywords 'TRANSLATION REGULATOR/RNA' _struct_keywords.text ;CPEB1, RNA recognition motif (RRM), Cytoplasmic polyadenylation, Protein-RNA Interaction, Translation regulation, TRANSLATION REGULATOR-RNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 32 ? PHE A 39 ? GLU A 249 PHE A 256 1 ? 8 HELX_P HELX_P2 2 PRO A 50 ? LYS A 55 ? PRO A 267 LYS A 272 5 ? 6 HELX_P HELX_P3 3 LEU A 71 ? GLN A 80 ? LEU A 288 GLN A 297 1 ? 10 HELX_P HELX_P4 4 ASN A 145 ? LEU A 156 ? ASN A 362 LEU A 373 1 ? 12 HELX_P HELX_P5 5 ASN A 183 ? ALA A 194 ? ASN A 400 ALA A 411 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 46 ? GLU A 48 ? SER A 263 GLU A 265 A 2 VAL A 65 ? VAL A 68 ? VAL A 282 VAL A 285 A 3 TYR A 17 ? LEU A 23 ? TYR A 234 LEU A 240 A 4 VAL A 109 ? VAL A 115 ? VAL A 326 VAL A 332 A 5 TYR A 95 ? PHE A 97 ? TYR A 312 PHE A 314 B 1 ASN A 120 ? PHE A 121 ? ASN A 337 PHE A 338 B 2 TYR A 162 ? THR A 167 ? TYR A 379 THR A 384 B 3 GLY A 175 ? THR A 180 ? GLY A 392 THR A 397 B 4 THR A 134 ? GLY A 138 ? THR A 351 GLY A 355 B 5 GLN A 208 ? ASP A 210 ? GLN A 425 ASP A 427 C 1 ILE A 198 ? LYS A 199 ? ILE A 415 LYS A 416 C 2 THR A 204 ? LYS A 205 ? THR A 421 LYS A 422 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 46 ? N SER A 263 O VAL A 68 ? O VAL A 285 A 2 3 O VAL A 65 ? O VAL A 282 N LEU A 23 ? N LEU A 240 A 3 4 N PHE A 22 ? N PHE A 239 O ILE A 112 ? O ILE A 329 A 4 5 O VAL A 111 ? O VAL A 328 N TYR A 95 ? N TYR A 312 B 1 2 N PHE A 121 ? N PHE A 338 O ALA A 163 ? O ALA A 380 B 2 3 N ASP A 166 ? N ASP A 383 O SER A 176 ? O SER A 393 B 3 4 O GLY A 177 ? O GLY A 394 N VAL A 137 ? N VAL A 354 B 4 5 N PHE A 136 ? N PHE A 353 O ASP A 210 ? O ASP A 427 C 1 2 N ILE A 198 ? N ILE A 415 O LYS A 205 ? O LYS A 422 # _atom_sites.entry_id 2MKK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 218 218 MET MET A . n A 1 2 THR 2 219 219 THR THR A . n A 1 3 TRP 3 220 220 TRP TRP A . n A 1 4 SER 4 221 221 SER SER A . n A 1 5 GLY 5 222 222 GLY GLY A . n A 1 6 GLN 6 223 223 GLN GLN A . n A 1 7 LEU 7 224 224 LEU LEU A . n A 1 8 PRO 8 225 225 PRO PRO A . n A 1 9 PRO 9 226 226 PRO PRO A . n A 1 10 ARG 10 227 227 ARG ARG A . n A 1 11 ASN 11 228 228 ASN ASN A . n A 1 12 TYR 12 229 229 TYR TYR A . n A 1 13 LYS 13 230 230 LYS LYS A . n A 1 14 ASN 14 231 231 ASN ASN A . n A 1 15 PRO 15 232 232 PRO PRO A . n A 1 16 ILE 16 233 233 ILE ILE A . n A 1 17 TYR 17 234 234 TYR TYR A . n A 1 18 SER 18 235 235 SER SER A . n A 1 19 CYS 19 236 236 CYS CYS A . n A 1 20 LYS 20 237 237 LYS LYS A . n A 1 21 VAL 21 238 238 VAL VAL A . n A 1 22 PHE 22 239 239 PHE PHE A . n A 1 23 LEU 23 240 240 LEU LEU A . n A 1 24 GLY 24 241 241 GLY GLY A . n A 1 25 GLY 25 242 242 GLY GLY A . n A 1 26 VAL 26 243 243 VAL VAL A . n A 1 27 PRO 27 244 244 PRO PRO A . n A 1 28 TRP 28 245 245 TRP TRP A . n A 1 29 ASP 29 246 246 ASP ASP A . n A 1 30 ILE 30 247 247 ILE ILE A . n A 1 31 THR 31 248 248 THR THR A . n A 1 32 GLU 32 249 249 GLU GLU A . n A 1 33 ALA 33 250 250 ALA ALA A . n A 1 34 GLY 34 251 251 GLY GLY A . n A 1 35 LEU 35 252 252 LEU LEU A . n A 1 36 VAL 36 253 253 VAL VAL A . n A 1 37 ASN 37 254 254 ASN ASN A . n A 1 38 THR 38 255 255 THR THR A . n A 1 39 PHE 39 256 256 PHE PHE A . n A 1 40 ARG 40 257 257 ARG ARG A . n A 1 41 VAL 41 258 258 VAL VAL A . n A 1 42 PHE 42 259 259 PHE PHE A . n A 1 43 GLY 43 260 260 GLY GLY A . n A 1 44 SER 44 261 261 SER SER A . n A 1 45 LEU 45 262 262 LEU LEU A . n A 1 46 SER 46 263 263 SER SER A . n A 1 47 VAL 47 264 264 VAL VAL A . n A 1 48 GLU 48 265 265 GLU GLU A . n A 1 49 TRP 49 266 266 TRP TRP A . n A 1 50 PRO 50 267 267 PRO PRO A . n A 1 51 GLY 51 268 268 GLY GLY A . n A 1 52 LYS 52 269 269 LYS LYS A . n A 1 53 ASP 53 270 270 ASP ASP A . n A 1 54 GLY 54 271 271 GLY GLY A . n A 1 55 LYS 55 272 272 LYS LYS A . n A 1 56 HIS 56 273 273 HIS HIS A . n A 1 57 PRO 57 274 274 PRO PRO A . n A 1 58 ARG 58 275 275 ARG ARG A . n A 1 59 CYS 59 276 276 CYS CYS A . n A 1 60 PRO 60 277 277 PRO PRO A . n A 1 61 PRO 61 278 278 PRO PRO A . n A 1 62 LYS 62 279 279 LYS LYS A . n A 1 63 GLY 63 280 280 GLY GLY A . n A 1 64 TYR 64 281 281 TYR TYR A . n A 1 65 VAL 65 282 282 VAL VAL A . n A 1 66 TYR 66 283 283 TYR TYR A . n A 1 67 LEU 67 284 284 LEU LEU A . n A 1 68 VAL 68 285 285 VAL VAL A . n A 1 69 PHE 69 286 286 PHE PHE A . n A 1 70 GLU 70 287 287 GLU GLU A . n A 1 71 LEU 71 288 288 LEU LEU A . n A 1 72 GLU 72 289 289 GLU GLU A . n A 1 73 LYS 73 290 290 LYS LYS A . n A 1 74 SER 74 291 291 SER SER A . n A 1 75 VAL 75 292 292 VAL VAL A . n A 1 76 ARG 76 293 293 ARG ARG A . n A 1 77 SER 77 294 294 SER SER A . n A 1 78 LEU 78 295 295 LEU LEU A . n A 1 79 LEU 79 296 296 LEU LEU A . n A 1 80 GLN 80 297 297 GLN GLN A . n A 1 81 ALA 81 298 298 ALA ALA A . n A 1 82 CYS 82 299 299 CYS CYS A . n A 1 83 SER 83 300 300 SER SER A . n A 1 84 HIS 84 301 301 HIS HIS A . n A 1 85 ASP 85 302 302 ASP ASP A . n A 1 86 PRO 86 303 303 PRO PRO A . n A 1 87 LEU 87 304 304 LEU LEU A . n A 1 88 SER 88 305 305 SER SER A . n A 1 89 PRO 89 306 306 PRO PRO A . n A 1 90 ASP 90 307 307 ASP ASP A . n A 1 91 GLY 91 308 308 GLY GLY A . n A 1 92 LEU 92 309 309 LEU LEU A . n A 1 93 SER 93 310 310 SER SER A . n A 1 94 GLU 94 311 311 GLU GLU A . n A 1 95 TYR 95 312 312 TYR TYR A . n A 1 96 TYR 96 313 313 TYR TYR A . n A 1 97 PHE 97 314 314 PHE PHE A . n A 1 98 LYS 98 315 315 LYS LYS A . n A 1 99 MET 99 316 316 MET MET A . n A 1 100 SER 100 317 317 SER SER A . n A 1 101 SER 101 318 318 SER SER A . n A 1 102 ARG 102 319 319 ARG ARG A . n A 1 103 ARG 103 320 320 ARG ARG A . n A 1 104 MET 104 321 321 MET MET A . n A 1 105 ARG 105 322 322 ARG ARG A . n A 1 106 CYS 106 323 323 CYS CYS A . n A 1 107 LYS 107 324 324 LYS LYS A . n A 1 108 GLU 108 325 325 GLU GLU A . n A 1 109 VAL 109 326 326 VAL VAL A . n A 1 110 GLN 110 327 327 GLN GLN A . n A 1 111 VAL 111 328 328 VAL VAL A . n A 1 112 ILE 112 329 329 ILE ILE A . n A 1 113 PRO 113 330 330 PRO PRO A . n A 1 114 TRP 114 331 331 TRP TRP A . n A 1 115 VAL 115 332 332 VAL VAL A . n A 1 116 LEU 116 333 333 LEU LEU A . n A 1 117 ALA 117 334 334 ALA ALA A . n A 1 118 ASP 118 335 335 ASP ASP A . n A 1 119 SER 119 336 336 SER SER A . n A 1 120 ASN 120 337 337 ASN ASN A . n A 1 121 PHE 121 338 338 PHE PHE A . n A 1 122 VAL 122 339 339 VAL VAL A . n A 1 123 ARG 123 340 340 ARG ARG A . n A 1 124 SER 124 341 341 SER SER A . n A 1 125 PRO 125 342 342 PRO PRO A . n A 1 126 SER 126 343 343 SER SER A . n A 1 127 GLN 127 344 344 GLN GLN A . n A 1 128 ARG 128 345 345 ARG ARG A . n A 1 129 LEU 129 346 346 LEU LEU A . n A 1 130 ASP 130 347 347 ASP ASP A . n A 1 131 PRO 131 348 348 PRO PRO A . n A 1 132 SER 132 349 349 SER SER A . n A 1 133 ARG 133 350 350 ARG ARG A . n A 1 134 THR 134 351 351 THR THR A . n A 1 135 VAL 135 352 352 VAL VAL A . n A 1 136 PHE 136 353 353 PHE PHE A . n A 1 137 VAL 137 354 354 VAL VAL A . n A 1 138 GLY 138 355 355 GLY GLY A . n A 1 139 ALA 139 356 356 ALA ALA A . n A 1 140 LEU 140 357 357 LEU LEU A . n A 1 141 HIS 141 358 358 HIS HIS A . n A 1 142 GLY 142 359 359 GLY GLY A . n A 1 143 MET 143 360 360 MET MET A . n A 1 144 LEU 144 361 361 LEU LEU A . n A 1 145 ASN 145 362 362 ASN ASN A . n A 1 146 ALA 146 363 363 ALA ALA A . n A 1 147 GLU 147 364 364 GLU GLU A . n A 1 148 ALA 148 365 365 ALA ALA A . n A 1 149 LEU 149 366 366 LEU LEU A . n A 1 150 ALA 150 367 367 ALA ALA A . n A 1 151 ALA 151 368 368 ALA ALA A . n A 1 152 ILE 152 369 369 ILE ILE A . n A 1 153 LEU 153 370 370 LEU LEU A . n A 1 154 ASN 154 371 371 ASN ASN A . n A 1 155 ASP 155 372 372 ASP ASP A . n A 1 156 LEU 156 373 373 LEU LEU A . n A 1 157 PHE 157 374 374 PHE PHE A . n A 1 158 GLY 158 375 375 GLY GLY A . n A 1 159 GLY 159 376 376 GLY GLY A . n A 1 160 VAL 160 377 377 VAL VAL A . n A 1 161 VAL 161 378 378 VAL VAL A . n A 1 162 TYR 162 379 379 TYR TYR A . n A 1 163 ALA 163 380 380 ALA ALA A . n A 1 164 GLY 164 381 381 GLY GLY A . n A 1 165 ILE 165 382 382 ILE ILE A . n A 1 166 ASP 166 383 383 ASP ASP A . n A 1 167 THR 167 384 384 THR THR A . n A 1 168 ASP 168 385 385 ASP ASP A . n A 1 169 LYS 169 386 386 LYS LYS A . n A 1 170 HIS 170 387 387 HIS HIS A . n A 1 171 LYS 171 388 388 LYS LYS A . n A 1 172 TYR 172 389 389 TYR TYR A . n A 1 173 PRO 173 390 390 PRO PRO A . n A 1 174 ILE 174 391 391 ILE ILE A . n A 1 175 GLY 175 392 392 GLY GLY A . n A 1 176 SER 176 393 393 SER SER A . n A 1 177 GLY 177 394 394 GLY GLY A . n A 1 178 ARG 178 395 395 ARG ARG A . n A 1 179 VAL 179 396 396 VAL VAL A . n A 1 180 THR 180 397 397 THR THR A . n A 1 181 PHE 181 398 398 PHE PHE A . n A 1 182 ASN 182 399 399 ASN ASN A . n A 1 183 ASN 183 400 400 ASN ASN A . n A 1 184 GLN 184 401 401 GLN GLN A . n A 1 185 ARG 185 402 402 ARG ARG A . n A 1 186 SER 186 403 403 SER SER A . n A 1 187 TYR 187 404 404 TYR TYR A . n A 1 188 LEU 188 405 405 LEU LEU A . n A 1 189 LYS 189 406 406 LYS LYS A . n A 1 190 ALA 190 407 407 ALA ALA A . n A 1 191 VAL 191 408 408 VAL VAL A . n A 1 192 SER 192 409 409 SER SER A . n A 1 193 ALA 193 410 410 ALA ALA A . n A 1 194 ALA 194 411 411 ALA ALA A . n A 1 195 PHE 195 412 412 PHE PHE A . n A 1 196 VAL 196 413 413 VAL VAL A . n A 1 197 GLU 197 414 414 GLU GLU A . n A 1 198 ILE 198 415 415 ILE ILE A . n A 1 199 LYS 199 416 416 LYS LYS A . n A 1 200 THR 200 417 417 THR THR A . n A 1 201 THR 201 418 418 THR THR A . n A 1 202 LYS 202 419 419 LYS LYS A . n A 1 203 PHE 203 420 420 PHE PHE A . n A 1 204 THR 204 421 421 THR THR A . n A 1 205 LYS 205 422 422 LYS LYS A . n A 1 206 LYS 206 423 423 LYS LYS A . n A 1 207 VAL 207 424 424 VAL VAL A . n A 1 208 GLN 208 425 425 GLN GLN A . n A 1 209 ILE 209 426 426 ILE ILE A . n A 1 210 ASP 210 427 427 ASP ASP A . n A 1 211 PRO 211 428 428 PRO PRO A . n A 1 212 TYR 212 429 429 TYR TYR A . n A 1 213 LEU 213 430 430 LEU LEU A . n B 2 1 U 1 1 1 U U B . n B 2 2 U 2 2 2 U U B . n B 2 3 U 3 3 3 U U B . n B 2 4 U 4 4 4 U U B . n B 2 5 A 5 5 5 A A B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-07-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_entry_details.entry_id 2MKK _pdbx_entry_details.sequence_details 'THIS PROTEIN SEQUENCE IS ISOFORM 4 OF CPEB1_HUMAN.' _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id CPEB1RRM12-1 ? 0.4-0.6 mM '[U-100% 13C; U-100% 15N; U-80% 2H]' 1 "5'-UUUUA-3'-2" ? 0.4-0.6 mM ? 1 'sodium chloride-3' 100 ? mM ? 1 'sodium phosphate-4' 50 ? mM ? 1 DTT-5 1 ? mM ? 1 'magnesium sulfate-6' 1 ? mM ? 1 CPEB1RRM12-7 ? 0.4-0.6 mM '[U-100% 13C; U-100% 15N]' 2 "5'-UUUUA-3'-8" ? 0.4-0.6 mM ? 2 'sodium chloride-9' 100 ? mM ? 2 'sodium phosphate-10' 50 ? mM ? 2 DTT-11 1 ? mM ? 2 'magnesium sulfate-12' 1 ? mM ? 2 CPEB1RRM12-13 ? 0.4-0.6 mM '[U-100% 13C; U-100% 15N]' 3 "5'-UUUUA-3'-14" ? 0.4-0.6 mM ? 3 'sodium chloride-15' 100 ? mM ? 3 'sodium phosphate-16' 50 ? mM ? 3 DTT-17 1 ? mM ? 3 'magnesium sulfate-18' 1 ? mM ? 3 CPEB1RRM12-19 ? 0.4-0.6 mM '[U-100% 15N]' 4 "5'-UUUUA-3'-20" ? 0.4-0.6 mM ? 4 'sodium chloride-21' 100 ? mM ? 4 'sodium phosphate-22' 50 ? mM ? 4 DTT-23 1 ? mM ? 4 'magnesium sulfate-24' 1 ? mM ? 4 CPEB1RRM12-25 ? 0.4-0.6 mM '[U-100% 15N]' 5 "5'-UUUUA-3'-26" ? 0.4-0.6 mM ? 5 'sodium chloride-27' 100 ? mM ? 5 'sodium phosphate-28' 50 ? mM ? 5 DTT-29 1 ? mM ? 5 'magnesium sulfate-30' 1 ? mM ? 5 CPEB1RRM12-31 ? 0.4-0.6 mM '[U-100% 15N]' 6 "5'-CUUUA-3'-32" ? 0.4-0.6 mM ? 6 'sodium chloride-33' 100 ? mM ? 6 'sodium phosphate-34' 50 ? mM ? 6 DTT-35 1 ? mM ? 6 'magnesium sulfate-36' 1 ? mM ? 6 CPEB1RRM12-37 ? 0.4-0.6 mM '[U-100% 13C; U-100% 15N]' 7 "5'-CUUUA-3'-38" ? 0.4-0.6 mM ? 7 'sodium chloride-39' 100 ? mM ? 7 'sodium phosphate-40' 50 ? mM ? 7 DTT-41 1 ? mM ? 7 'magnesium sulfate-42' 1 ? mM ? 7 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.28 108.50 4.78 0.70 N 2 2 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 114.67 108.50 6.17 0.70 N 3 3 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 112.95 108.50 4.45 0.70 N 4 4 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 114.13 108.50 5.63 0.70 N 5 5 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 114.15 108.50 5.65 0.70 N 6 6 "O4'" B U 1 ? ? "C1'" B U 1 ? ? N1 B U 1 ? ? 113.16 108.50 4.66 0.70 N 7 6 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 113.36 108.50 4.86 0.70 N 8 7 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 113.26 108.50 4.76 0.70 N 9 9 "O4'" B A 5 ? ? "C1'" B A 5 ? ? N9 B A 5 ? ? 113.62 108.50 5.12 0.70 N 10 10 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 114.15 108.50 5.65 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 245 ? ? -97.48 33.26 2 1 GLU A 249 ? ? -59.07 -9.44 3 1 ASP A 270 ? ? 55.16 19.67 4 1 CYS A 276 ? ? -145.18 59.01 5 1 HIS A 301 ? ? -166.51 -53.78 6 1 PRO A 303 ? ? -77.61 32.96 7 1 ASP A 307 ? ? -76.58 34.78 8 1 SER A 318 ? ? -147.69 10.46 9 1 ARG A 322 ? ? -76.07 25.19 10 1 LEU A 333 ? ? -68.45 1.36 11 1 ALA A 356 ? ? 57.13 13.46 12 1 PHE A 374 ? ? -160.14 -32.07 13 1 LYS A 386 ? ? 61.02 -17.34 14 1 PRO A 390 ? ? -58.46 -179.79 15 1 ILE A 391 ? ? 54.82 154.34 16 1 TYR A 404 ? ? -59.50 -73.98 17 1 ALA A 411 ? ? -71.60 42.31 18 1 PHE A 412 ? ? -66.90 0.99 19 1 LYS A 419 ? ? -150.42 5.18 20 2 SER A 261 ? ? -81.61 43.16 21 2 GLU A 287 ? ? -79.39 29.15 22 2 HIS A 301 ? ? 65.06 -154.43 23 2 PRO A 306 ? ? -58.72 -8.75 24 2 SER A 318 ? ? -152.87 9.10 25 2 ARG A 320 ? ? -148.06 -37.16 26 2 MET A 321 ? ? -142.87 56.01 27 2 ARG A 322 ? ? -75.67 44.12 28 2 GLN A 344 ? ? -142.98 -24.32 29 2 LEU A 357 ? ? 52.22 -22.28 30 2 HIS A 358 ? ? -171.70 -35.21 31 2 PHE A 374 ? ? -159.66 -26.47 32 2 LYS A 386 ? ? 50.77 14.90 33 2 PRO A 390 ? ? -46.37 171.12 34 2 THR A 417 ? ? -137.57 -151.48 35 2 THR A 418 ? ? -68.92 86.31 36 3 ASP A 246 ? ? -76.76 44.16 37 3 THR A 248 ? ? -142.24 -17.33 38 3 GLU A 249 ? ? -164.19 -25.89 39 3 HIS A 301 ? ? 63.75 -151.18 40 3 PHE A 314 ? ? -160.94 -167.23 41 3 ARG A 320 ? ? -69.49 2.10 42 3 ARG A 322 ? ? -70.72 32.47 43 3 PHE A 374 ? ? -147.32 -18.98 44 3 LYS A 386 ? ? 49.01 19.54 45 3 PRO A 390 ? ? -76.44 -113.66 46 3 ALA A 411 ? ? -91.73 31.71 47 3 PHE A 412 ? ? -75.71 20.21 48 3 LYS A 419 ? ? -135.80 -30.70 49 4 VAL A 243 ? ? 52.22 161.37 50 4 PRO A 244 ? ? -48.86 168.88 51 4 ASP A 246 ? ? -144.03 15.19 52 4 PRO A 306 ? ? -55.98 -6.75 53 4 PHE A 338 ? ? -175.41 -171.06 54 4 SER A 343 ? ? -143.48 25.20 55 4 ALA A 356 ? ? -161.96 -36.28 56 4 HIS A 358 ? ? 51.67 -174.64 57 4 PHE A 374 ? ? -145.85 -17.46 58 4 ASP A 383 ? ? 62.64 -71.63 59 4 ASP A 385 ? ? -168.53 -34.60 60 4 LYS A 388 ? ? 49.00 27.69 61 4 ILE A 391 ? ? -147.84 -27.24 62 4 THR A 418 ? ? 64.86 -2.44 63 4 LYS A 419 ? ? -151.38 9.34 64 5 ASN A 231 ? ? -150.72 57.46 65 5 PRO A 244 ? ? -79.84 22.34 66 5 GLU A 249 ? ? 61.40 -35.98 67 5 PHE A 259 ? ? 59.49 10.25 68 5 PRO A 278 ? ? -49.77 150.10 69 5 PHE A 286 ? ? 168.30 -170.21 70 5 GLU A 287 ? ? -69.14 25.23 71 5 LEU A 288 ? ? -73.68 24.60 72 5 CYS A 323 ? ? -151.16 -118.23 73 5 ALA A 334 ? ? -160.89 20.81 74 5 ASP A 335 ? ? 59.09 1.88 75 5 SER A 336 ? ? 55.47 -16.56 76 5 PHE A 338 ? ? -171.96 -173.40 77 5 SER A 349 ? ? -81.12 30.93 78 5 ALA A 356 ? ? -145.09 -28.82 79 5 PHE A 374 ? ? -161.98 -4.96 80 5 HIS A 387 ? ? -100.78 -147.24 81 5 PRO A 390 ? ? -73.21 -163.21 82 5 ALA A 411 ? ? -81.13 46.09 83 5 LYS A 419 ? ? -142.47 -0.32 84 5 PRO A 428 ? ? -77.76 27.52 85 6 PRO A 244 ? ? -48.17 160.97 86 6 ASP A 246 ? ? -153.08 85.45 87 6 THR A 248 ? ? -148.77 -13.46 88 6 GLU A 249 ? ? -168.95 -25.02 89 6 LYS A 279 ? ? 61.40 -67.58 90 6 PHE A 286 ? ? 87.93 179.56 91 6 GLU A 287 ? ? -65.97 33.63 92 6 LEU A 288 ? ? -74.61 25.71 93 6 PRO A 306 ? ? -56.19 -9.09 94 6 MET A 316 ? ? -127.29 -160.78 95 6 ALA A 334 ? ? -159.00 6.16 96 6 ASP A 335 ? ? 56.29 106.54 97 6 LEU A 357 ? ? -78.54 22.52 98 6 PHE A 374 ? ? -149.05 -35.10 99 6 SER A 393 ? ? -168.53 -150.39 100 7 ASN A 231 ? ? -150.79 58.34 101 7 VAL A 243 ? ? -112.86 70.78 102 7 GLU A 249 ? ? 60.45 -34.79 103 7 ARG A 257 ? ? -106.19 58.85 104 7 PHE A 259 ? ? -158.64 -26.95 105 7 SER A 261 ? ? 52.59 1.27 106 7 LYS A 269 ? ? -141.23 30.78 107 7 PRO A 306 ? ? -67.36 1.22 108 7 SER A 318 ? ? 46.13 -166.92 109 7 ARG A 322 ? ? 43.29 -118.13 110 7 SER A 336 ? ? 57.53 0.17 111 7 ARG A 345 ? ? 59.70 163.00 112 7 ALA A 356 ? ? 64.33 -1.18 113 7 ASP A 383 ? ? 62.06 -3.49 114 7 TYR A 389 ? ? -154.74 58.16 115 7 ILE A 391 ? ? 41.12 78.41 116 7 ALA A 411 ? ? -79.42 41.29 117 7 THR A 418 ? ? -151.84 -36.21 118 7 LYS A 419 ? ? -145.55 17.53 119 8 ASN A 228 ? ? 56.36 7.32 120 8 LYS A 230 ? ? -151.49 -26.89 121 8 GLU A 249 ? ? 61.09 -35.44 122 8 PHE A 259 ? ? -78.96 48.71 123 8 PHE A 286 ? ? -161.62 -163.18 124 8 HIS A 301 ? ? 67.10 -149.16 125 8 SER A 310 ? ? -162.42 80.48 126 8 PHE A 314 ? ? -160.82 -163.15 127 8 CYS A 323 ? ? -143.90 23.91 128 8 ASP A 335 ? ? -107.59 -152.97 129 8 GLN A 344 ? ? -142.24 -21.76 130 8 ASP A 347 ? ? -157.73 -46.48 131 8 SER A 349 ? ? 48.93 -143.80 132 8 ALA A 356 ? ? -143.23 31.44 133 8 LEU A 357 ? ? 51.99 6.46 134 8 PHE A 374 ? ? -160.60 -24.37 135 8 THR A 384 ? ? -155.32 38.90 136 8 LYS A 386 ? ? -151.76 17.93 137 8 THR A 417 ? ? -125.46 -69.51 138 9 GLU A 249 ? ? 56.63 -14.28 139 9 PHE A 259 ? ? 59.50 -28.44 140 9 PHE A 286 ? ? 84.12 -163.00 141 9 GLU A 287 ? ? -56.36 -0.83 142 9 HIS A 301 ? ? -160.16 -44.91 143 9 LEU A 333 ? ? 54.73 -175.09 144 9 PRO A 342 ? ? -59.47 -8.49 145 9 LEU A 357 ? ? 57.47 -71.87 146 9 HIS A 358 ? ? -151.22 -0.42 147 9 PHE A 374 ? ? -145.66 -42.74 148 9 HIS A 387 ? ? 48.30 -80.38 149 9 ILE A 391 ? ? -157.69 -71.12 150 9 SER A 393 ? ? 53.73 -163.21 151 9 THR A 418 ? ? 59.42 13.39 152 10 PRO A 226 ? ? -78.74 -169.40 153 10 SER A 235 ? ? 55.78 19.35 154 10 THR A 248 ? ? -143.89 43.34 155 10 GLU A 249 ? ? 59.48 11.25 156 10 PHE A 259 ? ? 53.59 7.55 157 10 PRO A 267 ? ? -76.71 -161.97 158 10 CYS A 276 ? ? 49.57 81.14 159 10 TYR A 281 ? ? 63.59 121.55 160 10 HIS A 301 ? ? -159.93 -54.81 161 10 ASP A 302 ? ? -157.22 85.46 162 10 SER A 318 ? ? -164.76 -165.91 163 10 MET A 321 ? ? -152.15 -30.53 164 10 MET A 360 ? ? 37.18 47.30 165 10 HIS A 387 ? ? -155.41 -10.03 166 10 TYR A 389 ? ? 65.29 140.95 167 10 TYR A 404 ? ? -60.76 -71.59 168 10 PHE A 412 ? ? -77.51 23.96 169 10 THR A 418 ? ? 47.67 27.00 170 10 THR A 421 ? ? 59.41 140.37 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 5 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 1 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.063 _pdbx_validate_planes.type 'SIDE CHAIN' #